Experiment set22IT008 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_2088 +2.8 6.3 RNA polymerase sigma factor SigX compare
PP_4944 +2.7 5.4 Carbamoyltransferase compare
PP_5337 +2.4 14.9 LysR family transcriptional regulator compare
PP_4941 +2.3 11.4 conserved exported protein of unknown function compare
PP_4892 +2.0 9.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0137 +1.9 10.2 glutamate/aspartate-proton DAACS transporter compare
PP_1066 +1.9 8.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1067 +1.8 11.3 Sensor histidine kinase compare
PP_4942 +1.7 2.6 conserved protein of unknown function compare
PP_4891 +1.5 6.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1096 +1.4 2.1 putative electron transport complex protein compare
PP_3043 +1.4 3.9 conserved protein of unknown function compare
PP_2847 +1.4 2.4 Urease accessory protein UreJ compare
PP_3971 +1.4 0.8 conserved protein of unknown function compare
PP_3866 +1.4 3.5 conserved protein of unknown function compare
PP_0834 +1.3 2.9 Sec translocation complex subunit YajC compare
PP_3726 +1.3 2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4136 +1.3 1.6 Transcriptional regulator, LuxR family compare
PP_3903 +1.3 1.8 conserved protein of unknown function compare
PP_5017 +1.3 1.9 Sec-independent protein translocase protein TatB compare
PP_1410 +1.3 1.5 conserved protein of unknown function compare
PP_3415 +1.2 4.3 Transcriptional regulator, LacI family conserved
PP_5748 +1.2 1.8 cytochrome c heme lyase subunit compare
PP_0574 +1.2 8.1 DNA-binding response regulator, LuxR family compare
PP_2793 +1.2 2.6 Acyl-CoA dehydrogenase family protein compare
PP_0135 +1.2 3.6 conserved exported protein of unknown function compare
PP_4296 +1.2 2.8 conserved exported protein of unknown function compare
PP_3551 +1.2 1.1 DNA-binding response regulator, LuxR family compare
PP_4482 +1.1 4.3 Transcriptional regulator, AraC family compare
PP_0803 +1.1 5.4 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1513 +1.1 2.9 Ribosomal RNA small subunit methyltransferase J compare
PP_2029 +1.1 2.3 von Willebrand factor type A domain protein compare
PP_0804 +1.0 5.6 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3073 +1.0 3.8 3-hydroxybutyrate dehydrogenase compare
PP_1186 +1.0 1.9 two component system DNA-binding transcriptional dual regulator compare
PP_3020 +1.0 1.8 putative Serine/threonine protein phosphatase compare
PP_0806 +1.0 9.1 putative Surface adhesion protein compare
PP_5621 +1.0 2.2 protein of unknown function compare
PP_0901 +1.0 5.7 DNA-binding response regulator compare
PP_4946 +1.0 6.5 sodium/L-proline transporter compare
PP_5475 +1.0 0.7 conserved protein of unknown function compare
PP_1038 +1.0 2.0 conserved protein of unknown function compare
PP_4961 +1.0 2.3 putative Lipoprotein compare
PP_5705 +1.0 1.4 protein of unknown function compare
PP_2903 +1.0 1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4470 +1.0 3.4 putative transcriptional regulator (Arc domain-containing) compare
PP_2280 +1.0 1.5 conserved protein of unknown function compare
PP_2575 +0.9 1.5 conserved exported protein of unknown function compare
PP_2379 +0.9 4.4 putative cytochrome oxidase biogenesis protein compare
PP_0136 +0.9 2.2 conserved exported protein of unknown function compare
PP_1981 +0.9 3.6 tRNA-dihydrouridine synthase C compare
PP_4504 +0.9 0.7 conserved exported protein of unknown function compare
PP_0198 +0.9 2.7 putative transporter compare
PP_4981 +0.9 2.4 polyisoprene-binding protein, acidic stress response factor compare
PP_2330 +0.9 2.1 conserved protein of unknown function compare
PP_5022 +0.9 2.0 Glutamine transport ATP-binding protein GlnQ compare
PP_1087 +0.9 5.7 Outer membrane protein, OmpA family compare
PP_1164 +0.9 1.0 Transcriptional regulator, LysR family compare
PP_4814 +0.9 1.7 ATP-dependent protease La domain protein compare
PP_0805 +0.9 4.7 Outer membrane efflux protein compare
PP_2138 +0.8 2.4 conserved protein of unknown function compare
PP_0274 +0.8 0.7 putative transcriptional regulator containing HTH domain compare
PP_0513 +0.8 1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5525 +0.8 2.0 conserved exported protein of unknown function compare
PP_3447 +0.8 1.1 conserved membrane protein of unknown function compare
PP_1372 +0.8 3.5 conserved protein of unknown function compare
PP_5024 +0.8 3.7 Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_5473 +0.8 2.0 putative transcriptional regulator, LuxR family compare
PP_1864 +0.8 2.4 conserved protein of unknown function compare
PP_1999 +0.8 1.4 membrane protein required for colicin V production compare
PP_4483 +0.8 3.1 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_3902 +0.8 1.5 conserved protein of unknown function compare
PP_3892 +0.8 1.2 conserved protein of unknown function compare
PP_1142 +0.8 0.9 conserved protein of unknown function compare
PP_5712 +0.8 1.5 conserved protein of unknown function compare
PP_4341 +0.7 3.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1903 +0.7 1.9 putative phosphotyrosine-protein phosphatase compare
PP_5084 +0.7 4.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2880 +0.7 1.9 Transcriptional regulator, TetR family compare
PP_1317 +0.7 2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2291 +0.7 1.5 conserved protein of unknown function compare
PP_5051 +0.7 1.3 conserved protein of unknown function compare
PP_5267 +0.7 1.7 putative cytochrome c5 compare
PP_4223 +0.7 1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4690 +0.7 2.2 Rieske 2Fe-2S family protein compare
PP_1036 +0.7 4.4 membrane-bound lytic murein transglycosylase F compare
PP_5486 +0.7 1.6 conserved protein of unknown function compare
PP_5502 +0.7 2.0 ribosome modulation factor compare
PP_0762 +0.7 1.9 Glycerate dehydrogenase compare
PP_2907 +0.7 2.0 DNA-binding response regulator compare
PP_3407 +0.7 1.3 conserved protein of unknown function compare
PP_t10 +0.7 1.4 tRNA-Pro compare
PP_1895 +0.7 2.2 putative ABC transporter - ATP binding subunit compare
PP_0850 +0.7 2.6 Dual-specificity RNA methyltransferase RlmN compare
PP_0839 +0.7 1.8 tRNA Cm32/Um32 methyltransferase compare
PP_5218 +0.7 2.0 DedA family protein compare
PP_0945 +0.7 1.3 conserved protein of unknown function compare
PP_3185 +0.7 2.1 Pet18 protein compare
PP_4669 +0.7 1.9 OmpA family protein compare
PP_0211 +0.7 2.7 conserved protein of unknown function compare
PP_4165 +0.7 2.5 conserved protein of unknown function compare
PP_2023 +0.7 2.6 Glutathione S-transferase family protein compare
PP_5188 +0.7 3.1 putative transcriptional regulator (AsnC/Lrp family) compare
PP_4356 +0.7 1.6 Flagellar protein FliO compare
PP_5106 +0.7 1.7 conserved inner membrane protein compare
PP_1813 +0.6 1.6 ComEA-related protein compare
PP_2801 +0.6 2.7 gamma-aminobutyraldehyde dehydrogenase compare
PP_3559 +0.6 2.0 glycine betaine ABC transporter (permease) compare
PP_2456 +0.6 2.1 D-ribose ABC transporter - permease subunit compare
PP_1353 +0.6 1.4 conserved membrane protein of unknown function compare
PP_4707 +0.6 1.4 OsmY-related protein compare
PP_1265 +0.6 2.4 conserved protein of unknown function compare
PP_2858 +0.6 2.0 conserved exported protein of unknown function compare
PP_1008 +0.6 1.0 RNA polymerase subunit sigma-24 compare
PP_0801 +0.6 0.9 conserved exported protein of unknown function compare
PP_2027 +0.6 2.0 conserved exported protein of unknown function compare
PP_4184 +0.6 3.7 branched chain amino acid transporter compare
PP_1201 +0.6 3.0 conserved exported protein of unknown function compare
PP_4354 +0.6 3.0 flagellar export apparatus subunit compare
PP_1363 +0.6 2.8 conserved protein of unknown function compare
PP_1439 +0.6 0.9 conserved exported protein of unknown function compare
PP_5143 +0.6 1.4 conserved membrane protein of unknown function compare
PP_4952 +0.6 1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3094 +0.6 2.7 conserved exported protein of unknown function compare
PP_0951 +0.6 3.0 Ribosome hibernation promoting factor compare
PP_3676 +0.6 2.5 conserved protein of unknown function compare
PP_5580 +0.6 1.2 protein of unknown function compare
PP_0984 +0.6 1.6 conserved membrane protein of unknown function compare
PP_3685 +0.6 2.2 conserved protein of unknown function compare
PP_3049 +0.6 2.3 conserved protein of unknown function compare
PP_2219 +0.6 1.3 conserved protein of unknown function compare
PP_1702 +0.6 1.8 Recombination-associated protein RdgC compare
PP_0235 +0.6 1.8 Peroxidase compare
PP_0281 +0.6 2.7 Amino acid ABC transporter, permease protein compare
PP_5209 +0.6 2.5 conserved exported protein of unknown function compare
PP_4104 +0.6 3.0 Glutathione S-transferase family protein compare
PP_2355 +0.6 1.8 Response regulator receiver protein compare
PP_4105 +0.6 2.6 conserved protein of unknown function compare
PP_5666 +0.6 1.7 putative microcin B17-like processing protein, McbB family compare
PP_2525 +0.6 2.1 conserved protein of unknown function compare
PP_2232 +0.6 1.2 XRE family transcriptional regulator compare
PP_1293 +0.6 1.0 molybdopterin synthase small subunit compare
PP_2077 +0.6 2.2 diaminopimelate decarboxylase compare
PP_4937 +0.6 2.0 toluene tolerance protein compare
PP_4344 +0.6 2.8 flagellar export pore protein compare
PP_4262 +0.6 0.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4204 +0.6 1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2979 +0.6 2.9 conserved protein of unknown function compare
PP_4590 +0.6 2.0 conserved protein of unknown function compare
PP_4792 +0.6 1.5 conserved exported protein of unknown function compare
PP_0563 +0.6 3.4 Response regulator compare
PP_4629 +0.6 1.6 Sensory box protein compare
PP_2462 +0.6 0.9 conserved protein of unknown function compare
PP_4917 +0.6 2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5254 +0.6 2.9 conserved protein of unknown function compare
PP_0593 +0.6 0.7 putative ribosome-binding factor compare
PP_1935 +0.6 1.2 Transcriptional regulator, Cro/CI family compare
PP_0872 +0.6 2.3 Peptide chain release factor 3 compare
PP_2399 +0.6 2.3 conserved protein of unknown function compare
PP_3018 +0.6 2.7 conserved protein of unknown function compare
PP_4227 +0.6 1.0 conserved protein of unknown function compare
PP_3854 +0.6 2.7 Lysozyme compare
PP_4905 +0.6 2.1 Flagellar motor rotation protein compare
PP_4769 +0.6 1.4 conserved protein of unknown function compare
PP_2309 +0.6 0.8 conserved protein of unknown function compare
PP_4947 +0.6 3.9 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_2737 +0.6 1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0125 +0.6 1.3 putative cytochrome c-type protein compare
PP_3248 +0.6 1.9 Dyp-type peroxidase family protein compare
PP_3908 +0.5 1.8 conserved protein of unknown function compare
PP_4384 +0.5 3.3 Flagellar L-ring protein compare
PP_1504 +0.5 2.9 conserved protein of unknown function compare
PP_3532 +0.5 1.1 Transcriptional regulator, AsnC family compare
PP_3806 +0.5 1.3 Hydrolase, isochorismatase family compare
PP_2340 +0.5 1.4 conserved protein of unknown function compare
PP_2028 +0.5 1.9 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0594 +0.5 2.8 Transcriptional regulator, TetR family compare
PP_3121 +0.5 1.7 transcriptional regulator, LysR family compare
PP_0367 +0.5 1.7 conserved protein of unknown function compare
PP_3850 +0.5 1.8 conserved protein of unknown function compare
PP_4008 +0.5 1.7 ATP-dependent serine protease compare
PP_2711 +0.5 2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3411 +0.5 0.6 conserved protein of unknown function compare
PP_1774 +0.5 1.7 conserved exported protein of unknown function compare
PP_1729 +0.5 1.1 conserved protein of unknown function compare
PP_4720 +0.5 1.2 putative RNA binding protein compare
PP_1632 +0.5 0.6 conserved protein of unknown function compare
PP_2825 +0.5 2.0 putative Integrase compare
PP_3449 +0.5 0.7 conserved exported protein of unknown function compare
PP_2683 +0.5 2.1 putative sensory box histidine kinase/response regulator compare
PP_0676 +0.5 2.4 putative Transcription elongation factor compare
PP_1544 +0.5 1.6 conserved protein of unknown function compare
PP_5494 +0.5 2.4 protein of unknown function compare
PP_4743 +0.5 2.1 conserved protein of unknown function compare
PP_2046 +0.5 1.2 Transcriptional regulator, LysR family compare
PP_3767 +0.5 2.1 conserved protein of unknown function compare
PP_4995 +0.5 2.2 putative protein possibly involved in the control of exopolysaccharide production compare
PP_1441 +0.5 2.0 tRNA (cmo5U34)-methyltransferase compare
PP_5298 +0.5 1.5 putative glutamine amidotransferase compare
PP_0294 +0.5 1.8 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare


Specific Phenotypes

For 5 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms