Experiment set22IT007 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1898 -5.8 -5.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4678 -5.6 -18.1 Ketol-acid reductoisomerase compare
PP_0422 -5.6 -5.7 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.6 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -5.5 -11.2 Branched-chain-amino-acid aminotransferase compare
PP_0967 -5.5 -12.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -5.5 -9.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -5.4 -7.4 Argininosuccinate lyase compare
PP_1988 -5.4 -11.5 3-isopropylmalate dehydrogenase compare
PP_0082 -5.2 -7.9 tryptophan synthase alpha chain compare
PP_0630 -5.1 -1.4 DNA gyrase inhibitor YacG compare
PP_0966 -5.0 -12.3 Histidinol dehydrogenase compare
PP_1985 -5.0 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_5289 -5.0 -5.1 Acetylglutamate kinase compare
PP_1088 -4.9 -13.8 Argininosuccinate synthase compare
PP_0292 -4.9 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0420 -4.8 -12.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4561 -4.8 -1.3 stress response protein compare
PP_4699 -4.7 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4890 -4.7 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -4.6 -14.4 pyruvate carboxylase subunit A compare
PP_0001 -4.6 -2.5 probable chromosome-partitioning protein compare
PP_4679 -4.5 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4099 -4.5 -31.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2348 -4.5 -7.5 Sensor histidine kinase compare
PP_5303 -4.4 -8.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5097 -4.4 -16.0 homoserine O-acetyltransferase compare
PP_4902 -4.4 -3.0 Oligoribonuclease compare
PP_0083 -4.3 -10.0 tryptophan synthase beta chain compare
PP_5128 -4.3 -8.1 Dihydroxy-acid dehydratase compare
PP_5098 -4.3 -11.0 methionine biosynthesis protein MetW compare
PP_5500 -4.3 -3.6 protein of unknown function compare
PP_0965 -4.2 -14.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5348 -4.2 -8.5 Transcriptional regulator, LysR family compare
PP_1650 -4.2 -17.5 Sensor protein GacS compare
PP_5185 -4.2 -7.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -4.1 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -4.1 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -4.0 -9.7 pyruvate carboxylase subunit B compare
PP_1986 -4.0 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.0 -7.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5015 -4.0 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2328 -4.0 -8.4 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -4.0 -6.6 Nitrogen regulation protein NR(I) compare
PP_3417 -3.9 -6.5 D-gluconate transporter compare
PP_5075 -3.9 -12.7 glutamate synthase (NADPH) beta subunit compare
PP_4909 -3.9 -8.3 phosphoserine phosphatase compare
PP_2001 -3.9 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_4994 -3.9 -4.6 conserved protein of unknown function compare
PP_5104 -3.9 -8.5 thiazole synthase compare
PP_0417 -3.9 -16.5 Anthranilate synthase component 1 compare
PP_1778 -3.8 -8.2 Lipopolysaccharide ABC export system, permease protein compare
PP_0421 -3.8 -9.1 Anthranilate phosphoribosyltransferase compare
PP_0406 -3.7 -4.5 Nucleotidyltransferase family protein compare
PP_5248 -3.7 -1.4 putative hydrolase compare
PP_3999 -3.7 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0165 -3.6 -14.8 GGDEF domain protein compare
PP_0787 -3.6 -6.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4519 -3.5 -10.2 Agglutination protein compare
PP_0168 -3.5 -19.8 putative surface adhesion protein compare
PP_1654 -3.5 -4.5 cysteine synthase B compare
PP_0846 -3.5 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_1198 -3.4 -4.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5076 -3.4 -16.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_2327 -3.4 -7.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1231 -3.4 -9.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2168 -3.3 -12.7 Transaldolase compare
PP_1079 -3.3 -7.4 Ornithine carbamoyltransferase compare
PP_0166 -3.3 -13.0 HlyD family secretion protein compare
PP_0362 -3.3 -12.6 Biotin synthase compare
PP_4828 -3.3 -1.8 Precorrin-8X methylmutase compare
PP_0735 -3.3 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_t29 -3.2 -2.2 tRNA-Ala compare
PP_0366 -3.2 -6.6 dethiobiotin synthetase compare
PP_1912 -3.1 -6.4 Phosphate acyltransferase compare
PP_2371 -3.0 -7.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0167 -3.0 -13.3 Toxin secretion ATP-binding protein compare
PP_4984 -3.0 -9.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1733 -3.0 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_5327 -2.9 -5.2 putative phosphate ABC transporter, permease subunit compare
PP_4782 -2.9 -5.0 Phosphomethylpyrimidine kinase compare
PP_4098 -2.9 -2.8 UvrABC system protein C compare
PP_5217 -2.8 -10.8 Polyphosphate kinase compare
PP_5350 -2.8 -4.7 Transcriptional regulator, RpiR family compare
PP_3505 -2.7 -2.5 conserved protein of unknown function compare
PP_4471 -2.7 -5.4 Magnesium transporter compare
PP_5155 -2.7 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3971 -2.7 -2.0 conserved protein of unknown function compare
PP_5095 -2.7 -1.4 pyrroline-5-carboxylate reductase compare
PP_0365 -2.6 -9.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4338 -2.6 -7.5 Chemotaxis histidine kinase CheA compare
PP_0368 -2.6 -10.8 putative Acyl-CoA dehydrogenase compare
PP_4785 -2.6 -5.0 conserved exported protein of unknown function compare
PP_1344 -2.6 -2.5 conserved protein of unknown function compare
PP_1233 -2.6 -6.9 sulfurtransferase compare
PP_4700 -2.5 -2.4 pantothenate synthetase compare
PP_0065 -2.5 -4.0 NAD-binding component of TrK potassium transporter compare
PP_0435 -2.5 -9.5 Peptidase, M23/M37 family compare
PP_0363 -2.5 -9.6 8-amino-7-oxononanoate synthase compare
PP_0364 -2.4 -7.5 pimeloyl-[acp] methyl ester esterase compare
PP_1022 -2.4 -4.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4693 -2.4 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_2714 -2.4 -7.1 Sensor histidine kinase compare
PP_5328 -2.3 -2.7 putative phosphate transport system permease protein compare
PP_4120 -2.3 -4.7 NADH-quinone oxidoreductase subunit B compare
PP_2052 -2.3 -7.8 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_4129 -2.3 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4340 -2.3 -5.5 response regulator for chemotactic signal transduction compare
PP_1764 -2.2 -3.7 Phosphoglycolate phosphatase 2 compare
PP_1734 -2.2 -5.6 Probable septum site-determining protein MinC compare
PP_1493 -2.2 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2402 -2.2 -2.3 putative Sensor histidine kinase compare
PP_1097 -2.2 -1.4 Methionine--tRNA ligase compare
PP_2136 -2.2 -5.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4126 -2.2 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_5557 -2.1 -2.7 protein of unknown function compare
PP_4895 -2.1 -2.0 tRNA dimethylallyltransferase compare
PP_1025 -2.1 -5.8 2-isopropylmalate synthase compare
PP_4943 -2.0 -2.4 putative Glycosyl transferase compare
PP_3541 -2.0 -2.5 Transporter, MgtC family compare
PP_2433 -2.0 -2.1 conserved protein of unknown function compare
PP_0960 -2.0 -3.6 phospholipid ABC transporter binding protein compare
PP_4004 -2.0 -2.9 DNA translocase FtsK compare
PP_2370 -1.9 -2.0 conserved protein of unknown function compare
PP_4832 -1.9 -4.3 Precorrin-6x reductase compare
PP_1623 -1.9 -6.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_4922 -1.9 -6.9 Phosphomethylpyrimidine synthase compare
PP_3808 -1.9 -2.1 Antibiotic synthesis protein MbtH compare
PP_0719 -1.9 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3603 -1.8 -5.7 Transcriptional regulator, GntR family compare
PP_4392 -1.8 -6.2 chemotaxis protein methyltransferase compare
PP_1216 -1.8 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0393 -1.8 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1656 -1.8 -6.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_3506 -1.8 -3.5 Magnesium chelatase, subunit ChII compare
PP_1779 -1.8 -4.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0957 -1.8 -1.5 D-arabinose 5-phosphate isomerase compare
PP_5145 -1.8 -10.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4364 -1.7 -4.8 putative Anti-sigma F factor antagonist compare
PP_1677 -1.7 -3.3 Adenosyl-cobyric acid synthase compare
PP_4124 -1.7 -4.4 NADH-quinone oxidoreductase subunit G compare
PP_1309 -1.7 -4.6 conserved exported protein of unknown function compare
PP_4726 -1.7 -2.6 Chaperone protein DnaJ compare
PP_4121 -1.7 -5.2 NADH-quinone oxidoreductase subunit C/D compare
PP_1783 -1.7 -2.1 dTDP-glucose pyrophosphorylase compare
PP_3810 -1.7 -1.7 conserved protein of unknown function compare
PP_2336 -1.7 -3.4 aconitate hydratase 1 compare
PP_1678 -1.7 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0547 -1.6 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4880 -1.6 -7.5 exoribonuclease R compare
PP_2302 -1.6 -3.9 DNA-binding, ATP-dependent protease compare
PP_1303 -1.6 -5.4 Sulfate adenylyltransferase subunit 2 compare
PP_4977 -1.6 -7.2 5,10-methylenetetrahydrofolate reductase compare
PP_5039 -1.6 -1.5 conserved protein of unknown function compare
PP_0673 -1.5 -1.3 conserved protein of unknown function compare
PP_2390 -1.5 -4.9 Transcriptional regulator, LysR family compare
PP_1348 -1.5 -5.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4133 -1.5 -2.1 Transcriptional regulator-related protein compare
PP_t11 -1.5 -1.5 tRNA-Lys compare
PP_4642 -1.5 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4695 -1.5 -6.5 Sensory box histidine kinase compare
PP_4362 -1.5 -2.4 conserved protein of unknown function compare
PP_3035 -1.5 -1.6 conserved protein of unknown function compare
PP_0789 -1.5 -4.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4874 -1.5 -1.2 50S ribosomal protein L9 compare
PP_0291 -1.4 -2.0 conserved protein of unknown function compare
PP_5236 -1.4 -6.5 conserved protein of unknown function compare
PP_5317 -1.4 -2.0 Probable chorismate pyruvate-lyase compare
PP_5429 -1.4 -3.8 protein of unknown function compare
PP_1675 -1.4 -6.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0377 -1.4 -1.8 coenzyme PQQ synthesis protein D compare
PP_5329 -1.4 -3.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0127 -1.4 -3.8 Thiol:disulfide interchange protein compare
PP_t10 -1.4 -1.5 tRNA-Pro compare
PP_1589 -1.4 -6.6 uridylyltransferase compare
PP_4560 -1.4 -2.0 putative Ribonuclease BN compare
PP_1679 -1.4 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0962 -1.4 -2.4 toluene-tolerance protein compare
PP_4131 -1.4 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_5628 -1.3 -1.7 conserved protein of unknown function compare
PP_3507 -1.3 -7.1 Aerobic cobaltochelatase subunit CobN compare
PP_5430 -1.3 -3.2 protein of unknown function compare
PP_2137 -1.3 -1.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_0405 -1.3 -5.6 conserved protein of unknown function compare
PP_2345 -1.3 -1.9 conserved exported protein of unknown function compare
PP_4204 -1.3 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1304 -1.3 -6.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2756 -1.3 -2.3 conserved protein of unknown function compare
PP_4830 -1.2 -3.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_2083 -1.2 -2.3 putative Lipase compare
PP_0484 -1.2 -4.3 transporter of an unknown substrate compare
PP_1681 -1.2 -5.3 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4332 -1.2 -3.4 Chemotaxis protein CheW compare
PP_3919 -1.2 -3.0 conserved protein of unknown function compare
PP_4804 -1.2 -1.7 RlpA-like lipoprotein compare
PP_4333 -1.2 -4.1 CheW domain protein compare
PP_2280 -1.2 -1.0 conserved protein of unknown function compare
PP_2044 -1.2 -1.8 conserved inner membrane protein of unknown function compare
PP_2145 -1.2 -1.6 beta-N-acetylglucosaminidase compare


Specific Phenotypes

For 7 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms