Experiment set22IT007 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_4944 +3.0 7.8 Carbamoyltransferase compare
PP_2088 +2.3 7.0 RNA polymerase sigma factor SigX compare
PP_4941 +2.3 11.8 conserved exported protein of unknown function compare
PP_5337 +2.3 10.7 LysR family transcriptional regulator compare
PP_4892 +1.9 9.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0137 +1.8 11.4 glutamate/aspartate-proton DAACS transporter compare
PP_1067 +1.8 11.2 Sensor histidine kinase compare
PP_1186 +1.8 2.7 two component system DNA-binding transcriptional dual regulator compare
PP_1066 +1.7 6.0 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4942 +1.7 2.8 conserved protein of unknown function compare
PP_2847 +1.6 3.2 Urease accessory protein UreJ compare
PP_4891 +1.5 5.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3415 +1.5 5.7 Transcriptional regulator, LacI family conserved
PP_4482 +1.5 4.2 Transcriptional regulator, AraC family compare
PP_0319 +1.4 3.2 conserved protein of unknown function compare
PP_4946 +1.3 7.1 sodium/L-proline transporter compare
PP_1164 +1.3 1.2 Transcriptional regulator, LysR family compare
PP_5475 +1.3 2.1 conserved protein of unknown function compare
PP_0804 +1.2 6.3 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3447 +1.2 1.7 conserved membrane protein of unknown function compare
PP_5216 +1.2 2.2 exopolyphosphatase compare
PP_3201 +1.2 2.8 BNR domain protein compare
PP_0135 +1.2 4.2 conserved exported protein of unknown function compare
PP_0574 +1.2 7.3 DNA-binding response regulator, LuxR family compare
PP_1008 +1.1 1.9 RNA polymerase subunit sigma-24 compare
PP_0803 +1.1 5.7 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1122 +1.1 1.9 OmpA family protein compare
PP_2030 +1.1 3.4 conserved protein of unknown function compare
PP_2976 +1.1 1.9 putative transposase compare
PP_0805 +1.1 4.9 Outer membrane efflux protein compare
PP_3312 +1.0 1.9 putative Heat shock protein compare
PP_2121 +1.0 2.4 putative Lipoprotein compare
PP_0801 +1.0 1.5 conserved exported protein of unknown function compare
PP_0806 +1.0 8.9 putative Surface adhesion protein compare
PP_5225 +1.0 1.7 frataxin compare
PP_2379 +1.0 4.8 putative cytochrome oxidase biogenesis protein compare
PP_2029 +1.0 2.9 von Willebrand factor type A domain protein compare
PP_2794 +1.0 2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3766 +1.0 2.2 Lactoylglutathione lyase compare
PP_0627 +1.0 2.4 conserved protein of unknown function compare
PP_4720 +1.0 2.3 putative RNA binding protein compare
PP_4504 +0.9 1.8 conserved exported protein of unknown function compare
PP_4184 +0.9 5.4 branched chain amino acid transporter compare
PP_3903 +0.9 1.8 conserved protein of unknown function compare
PP_5267 +0.9 1.3 putative cytochrome c5 compare
PP_5705 +0.9 2.2 protein of unknown function compare
PP_5552 +0.9 1.8 conserved protein of unknown function compare
PP_1176 +0.9 2.1 conserved protein of unknown function compare
PP_4904 +0.9 3.5 Flagellar motor rotation protein compare
PP_2765 +0.9 1.7 putative Sulfonate monooxygenase MsuD compare
PP_0195 +0.9 2.5 conserved protein of unknown function compare
PP_3866 +0.9 2.0 conserved protein of unknown function compare
PP_4391 +0.8 3.7 flagellar basal-body rod protein FlgB compare
PP_2027 +0.8 3.4 conserved exported protein of unknown function compare
PP_0886 +0.8 2.6 conserved exported protein of unknown function compare
PP_5110 +0.8 1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4917 +0.8 2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2697 +0.8 3.2 putative oxidoreductase containing a flavin reductase domain compare
PP_1691 +0.8 2.3 conserved protein of unknown function compare
PP_1036 +0.8 4.9 membrane-bound lytic murein transglycosylase F compare
PP_2227 +0.8 2.3 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_0872 +0.8 3.5 Peptide chain release factor 3 compare
PP_5499 +0.8 2.8 conserved protein of unknown function compare
PP_t12 +0.8 1.0 tRNA-Thr compare
PP_4551 +0.8 3.1 Hydrolase, alpha/beta fold family compare
PP_3551 +0.8 1.3 DNA-binding response regulator, LuxR family compare
PP_1211 +0.8 2.6 conserved protein of unknown function compare
PP_2836 +0.8 2.1 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4215 +0.8 2.8 pyoverdine biosynthesis related protein compare
PP_0757 +0.8 2.8 conserved protein of unknown function compare
PP_0262 +0.8 2.2 conserved protein of unknown function compare
PP_5658 +0.8 1.8 protein of unknown function compare
PP_0921 +0.8 1.5 Transcriptional regulator, ArsR family compare
PP_5445 +0.8 1.9 conserved protein of unknown function compare
PP_4797 +0.8 1.6 conserved protein of unknown function compare
PP_3640 +0.7 2.7 Transcriptional regulator, AraC family compare
PP_4848 +0.7 2.3 Curved DNA-binding protein compare
PP_2122 +0.7 2.1 molybdenum cofactor biosynthesis protein B compare
PP_2455 +0.7 3.2 ribose ABC transporter - ATP-binding subunit compare
PP_0903 +0.7 2.6 conserved protein of unknown function compare
PP_3906 +0.7 1.3 conserved protein of unknown function compare
PP_1071 +0.7 3.1 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_4632 +0.7 2.8 dihydrofolate reductase / dihydromonapterin reductase compare
PP_2028 +0.7 3.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3902 +0.7 1.2 conserved protein of unknown function compare
PP_4136 +0.7 0.9 Transcriptional regulator, LuxR family compare
PP_3559 +0.7 1.2 glycine betaine ABC transporter (permease) compare
PP_1824 +0.7 0.9 Smr domain protein compare
PP_2210 +0.7 2.0 LysR family transcriptional regulator compare
PP_5022 +0.7 0.9 Glutamine transport ATP-binding protein GlnQ compare
PP_4253 +0.7 1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3705 +0.7 2.6 conserved membrane protein of unknown function compare
PP_0332 +0.7 2.5 putative Acyltransferase compare
PP_2737 +0.7 0.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0593 +0.7 0.8 putative ribosome-binding factor compare
PP_1657 +0.7 1.8 modified nucleoside triphosphate pyrophosphohydrolase compare
PP_4985 +0.7 2.2 16S rRNA m3U1498 methyltransferase compare
PP_4109 +0.7 1.9 conserved protein of unknown function compare
PP_5687 +0.7 2.4 putative permease of the major facilitator superfamily compare
PP_5194 +0.7 2.7 aminomethyltransferase compare
PP_2675 +0.7 2.3 Cytochrome c-type protein compare
PP_3121 +0.7 1.7 transcriptional regulator, LysR family compare
PP_5568 +0.7 1.9 conserved membrane protein of unknown function compare
PP_5502 +0.7 1.5 ribosome modulation factor compare
PP_0512 +0.7 1.1 hypothetical protein compare
PP_4196 +0.7 0.9 conserved exported protein of unknown function compare
PP_5701 +0.6 1.6 conserved protein of unknown function compare
PP_5486 +0.6 1.2 conserved protein of unknown function compare
PP_3901 +0.6 2.1 conserved protein of unknown function compare
PP_3295 +0.6 1.7 YeeE/YedE family protein compare
PP_4449 +0.6 1.9 conserved protein of unknown function compare
PP_1494 +0.6 3.6 Response regulator/GGDEF domain protein compare
PP_2360 +0.6 2.3 putative type 1 pili subunit CsuA/B protein compare
PP_0902 +0.6 4.2 integral membrane sensor signal transduction histidine kinase compare
PP_0855 +0.6 1.4 conserved protein of unknown function compare
PP_1366 +0.6 1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1178 +0.6 2.1 conserved protein of unknown function compare
PP_0191 +0.6 1.2 Transcriptional regulatory protein AlgQ compare
PP_2031 +0.6 1.4 conserved protein of unknown function compare
PP_4808 +0.6 0.8 23S rRNA m3psi1915 methyltransferase compare
PP_1237 +0.6 1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3883 +0.6 2.0 putative Phage holin compare
PP_3874 +0.6 1.4 conserved protein of unknown function compare
PP_2452 +0.6 2.3 conserved protein of unknown function compare
PP_4018 +0.6 1.4 Acetyltransferase, GNAT family compare
PP_5580 +0.6 1.2 protein of unknown function compare
PP_1935 +0.6 0.8 Transcriptional regulator, Cro/CI family compare
PP_5338 +0.6 1.2 aspartate ammonia-lyase compare
PP_4485 +0.6 3.0 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_1353 +0.6 0.9 conserved membrane protein of unknown function compare
PP_4479 +0.6 2.5 arginine N-succinyltransferase, subunit beta compare
PP_1570 +0.6 1.6 Head-tail adaptor compare
PP_5008 +0.6 0.5 Poly granule-associated protein compare
PP_2118 +0.6 1.8 conserved protein of unknown function compare
PP_1729 +0.6 0.9 conserved protein of unknown function compare
PP_1646 +0.6 1.6 putative Thioredoxin compare
PP_0152 +0.6 1.6 conserved exported protein of unknown function compare
PP_4488 +0.6 2.0 conserved exported protein of unknown function compare
PP_4701 +0.6 0.7 glucose-6-phosphate isomerase compare
PP_3978 +0.6 2.2 conserved protein of unknown function compare
PP_3051 +0.6 1.3 Pyocin R2_PP, tail spike protein compare
PP_0355 +0.6 1.9 Response regulator compare
PP_5241 +0.6 1.5 DNA-binding response regulator, LuxR family compare
PP_2946 +0.6 1.9 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_5541 +0.6 1.9 conserved protein of unknown function compare
PP_1774 +0.6 1.9 conserved exported protein of unknown function compare
PP_4534 +0.6 2.3 conserved protein of unknown function compare
PP_1239 +0.6 2.0 Metallo-beta-lactamase family protein compare
PP_5508 +0.6 0.8 conserved protein of unknown function compare
PP_2555 +0.6 2.2 conserved protein of unknown function compare
PP_0770 +0.6 1.5 PemI-like protein compare
PP_5156 +0.6 2.1 conserved exported protein of unknown function compare
PP_0901 +0.6 2.4 DNA-binding response regulator compare
PP_2903 +0.6 0.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4789 +0.6 2.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0250 +0.6 1.3 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5600 +0.6 1.7 conserved protein of unknown function compare
PP_4341 +0.6 3.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4390 +0.6 3.2 flagellar basal-body rod protein FlgC compare
PP_4262 +0.6 0.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0951 +0.6 2.7 Ribosome hibernation promoting factor compare
PP_2793 +0.6 0.8 Acyl-CoA dehydrogenase family protein compare
PP_2153 +0.6 1.4 conserved protein of unknown function compare
PP_1645 +0.6 1.6 putative enzyme compare
PP_3407 +0.6 1.3 conserved protein of unknown function compare
PP_4162 +0.5 1.9 conserved membrane protein of unknown function compare
PP_2138 +0.5 1.9 conserved protein of unknown function compare
PP_4836 +0.5 2.1 conserved exported protein of unknown function compare
PP_1976 +0.5 1.7 HlyD family secretion protein compare
PP_3685 +0.5 1.2 conserved protein of unknown function compare
PP_0848 +0.5 0.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0254 +0.5 0.9 conserved protein of unknown function compare
PP_0048 +0.5 0.8 conserved protein of unknown function compare
PP_5170 +0.5 1.9 sulfate ABC transporter, inner membrane subunit CysT compare
PP_2704 +0.5 2.5 Peptidase, M20/M25/M40 family compare
PP_4629 +0.5 1.8 Sensory box protein compare
PP_0802 +0.5 2.1 putative chemotaxis protein compare
PP_2923 +0.5 1.6 conserved protein of unknown function compare
PP_0905 +0.5 0.7 conserved exported protein of unknown function compare
PP_2741 +0.5 2.7 conserved membrane protein of unknown function compare
PP_5512 +0.5 2.2 protein of unknown function compare
PP_5167 +0.5 0.9 conserved hypothetical protein compare
PP_1317 +0.5 1.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5525 +0.5 1.0 conserved exported protein of unknown function compare
PP_5586 +0.5 2.0 exported protein of unknown function compare
PP_1515 +0.5 1.5 Transcriptional regulator, tetR family compare
PP_3451 +0.5 2.1 conserved exported protein of unknown function compare
PP_2434 +0.5 1.8 conserved protein of unknown function compare
PP_3799 +0.5 2.0 conserved exported protein of unknown function compare
PP_3027 +0.5 1.8 conserved protein of unknown function compare
PP_1410 +0.5 0.5 conserved protein of unknown function compare
PP_4483 +0.5 2.5 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_0948 +0.5 0.9 Phosphocarrier protein HPr compare
PP_4388 +0.5 3.7 Flagellar hook protein FlgE compare
PP_4370 +0.5 2.8 Flagellar hook-basal body complex protein FliE compare
PP_2450 +0.5 2.6 conserved protein of unknown function compare
PP_5435 +0.5 2.0 conserved protein of unknown function compare
PP_4452 +0.5 1.1 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_3488 +0.5 1.5 Sco1/SenC family protein compare
PP_0919 +0.5 1.3 conserved protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms