Experiment set22IT006 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -6.3 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_3417 -5.6 -7.9 D-gluconate transporter compare
PP_1079 -5.6 -8.2 Ornithine carbamoyltransferase compare
PP_1985 -5.5 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_0082 -5.3 -8.1 tryptophan synthase alpha chain compare
PP_0184 -5.3 -8.1 Argininosuccinate lyase compare
PP_0965 -5.1 -12.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -5.0 -10.8 methionine biosynthesis protein MetW compare
PP_1988 -5.0 -9.8 3-isopropylmalate dehydrogenase compare
PP_0967 -4.9 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -4.9 -17.0 Ketol-acid reductoisomerase compare
PP_2001 -4.8 -12.2 O-succinylhomoserine sulfhydrylase compare
PP_2328 -4.8 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_5185 -4.8 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -4.7 -5.4 Indole-3-glycerol phosphate synthase compare
PP_4680 -4.6 -17.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -4.6 -9.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -4.6 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5347 -4.5 -14.2 pyruvate carboxylase subunit A compare
PP_5097 -4.5 -16.2 homoserine O-acetyltransferase compare
PP_4890 -4.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4099 -4.4 -28.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0966 -4.4 -9.5 Histidinol dehydrogenase compare
PP_4679 -4.4 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.3 -14.6 Argininosuccinate synthase compare
PP_1215 -4.3 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5346 -4.3 -9.9 pyruvate carboxylase subunit B compare
PP_1912 -4.3 -7.6 Phosphate acyltransferase compare
PP_5348 -4.2 -9.2 Transcriptional regulator, LysR family compare
PP_4909 -4.2 -9.0 phosphoserine phosphatase compare
PP_3511 -4.2 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_0290 -4.2 -8.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1650 -4.2 -21.3 Sensor protein GacS compare
PP_5075 -4.1 -13.6 glutamate synthase (NADPH) beta subunit compare
PP_2370 -4.1 -3.9 conserved protein of unknown function compare
PP_1898 -4.1 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5128 -4.1 -8.7 Dihydroxy-acid dehydratase compare
PP_4782 -4.0 -7.4 Phosphomethylpyrimidine kinase compare
PP_0417 -3.9 -17.2 Anthranilate synthase component 1 compare
PP_2327 -3.9 -8.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -3.9 -6.9 Nitrogen regulation protein NR(I) compare
PP_5014 -3.9 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4804 -3.9 -4.6 RlpA-like lipoprotein compare
PP_4785 -3.8 -5.7 conserved exported protein of unknown function compare
PP_2348 -3.8 -5.5 Sensor histidine kinase compare
PP_0083 -3.7 -7.1 tryptophan synthase beta chain compare
PP_0421 -3.7 -7.4 Anthranilate phosphoribosyltransferase compare
PP_1231 -3.7 -6.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0735 -3.7 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0787 -3.6 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1778 -3.6 -10.3 Lipopolysaccharide ABC export system, permease protein compare
PP_5104 -3.6 -7.9 thiazole synthase compare
PP_0420 -3.5 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4519 -3.5 -11.0 Agglutination protein compare
PP_3999 -3.5 -9.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4126 -3.4 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_1022 -3.4 -6.1 glucose 6-phosphate-1-dehydrogenase compare
PP_0165 -3.4 -15.3 GGDEF domain protein compare
PP_5015 -3.4 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4699 -3.4 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0289 -3.4 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4726 -3.4 -3.7 Chaperone protein DnaJ compare
PP_4874 -3.3 -1.7 50S ribosomal protein L9 compare
PP_4340 -3.3 -5.0 response regulator for chemotactic signal transduction compare
PP_4994 -3.3 -3.6 conserved protein of unknown function compare
PP_0167 -3.2 -14.4 Toxin secretion ATP-binding protein compare
PP_4984 -3.2 -10.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2136 -3.1 -5.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5289 -3.1 -4.6 Acetylglutamate kinase compare
PP_5217 -3.1 -9.6 Polyphosphate kinase compare
PP_0166 -3.1 -11.3 HlyD family secretion protein compare
PP_0365 -3.1 -9.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2168 -3.0 -10.4 Transaldolase compare
PP_5076 -2.9 -14.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_0366 -2.9 -6.2 dethiobiotin synthetase compare
PP_0168 -2.9 -16.1 putative surface adhesion protein compare
PP_0406 -2.9 -3.8 Nucleotidyltransferase family protein compare
PP_0888 -2.9 -2.9 Photosynthetic apparatus regulatory protein RegA compare
PP_1233 -2.9 -6.6 sulfurtransferase compare
PP_4471 -2.8 -5.5 Magnesium transporter compare
PP_1026 -2.7 -3.8 Peptidase, M23/M37 family compare
PP_5155 -2.7 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5095 -2.7 -1.3 pyrroline-5-carboxylate reductase compare
PP_4338 -2.6 -10.2 Chemotaxis histidine kinase CheA compare
PP_5303 -2.6 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0292 -2.6 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0368 -2.5 -10.0 putative Acyl-CoA dehydrogenase compare
PP_0364 -2.5 -8.4 pimeloyl-[acp] methyl ester esterase compare
PP_0435 -2.4 -8.0 Peptidase, M23/M37 family compare
PP_5393 -2.4 -1.7 putative metal-binding chaperone compare
PP_4902 -2.4 -3.0 Oligoribonuclease compare
PP_4700 -2.4 -2.8 pantothenate synthetase compare
PP_0362 -2.4 -10.4 Biotin synthase compare
PP_0291 -2.4 -2.5 conserved protein of unknown function compare
PP_1237 -2.3 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0363 -2.3 -10.0 8-amino-7-oxononanoate synthase compare
PP_2052 -2.3 -9.9 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_5327 -2.3 -4.7 putative phosphate ABC transporter, permease subunit compare
PP_4268 -2.3 -1.8 nucleoid-associated broad specificity regulator compare
PP_1020 -2.2 -1.9 putative glucose-6-phosphate 1-epimerase compare
PP_3766 -2.2 -2.5 Lactoylglutathione lyase compare
PP_5329 -2.2 -1.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0434 -2.2 -3.5 Anhydro-N-acetylmuramic acid kinase compare
PP_4922 -2.2 -8.5 Phosphomethylpyrimidine synthase compare
PP_1025 -2.2 -6.2 2-isopropylmalate synthase compare
PP_5350 -2.2 -3.9 Transcriptional regulator, RpiR family compare
PP_2402 -2.1 -2.6 putative Sensor histidine kinase compare
PP_1679 -2.1 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1269 -2.1 -1.3 Universal stress protein family compare
PP_1826 -2.1 -3.1 Hydrolase, isochorismatase family compare
PP_2132 -2.1 -4.5 Universal stress protein compare
PP_1764 -2.1 -3.9 Phosphoglycolate phosphatase 2 compare
PP_1656 -2.0 -7.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_1779 -2.0 -4.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5145 -2.0 -11.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0948 -2.0 -1.6 Phosphocarrier protein HPr compare
PP_4392 -1.9 -5.8 chemotaxis protein methyltransferase compare
PP_5035 -1.9 -6.2 Histidine utilization repressor compare
PP_1353 -1.9 -2.5 conserved membrane protein of unknown function compare
PP_2388 -1.9 -3.6 Transporter, LysE family compare
PP_0547 -1.8 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2433 -1.8 -1.8 conserved protein of unknown function compare
PP_0065 -1.8 -3.5 NAD-binding component of TrK potassium transporter compare
PP_4977 -1.7 -8.1 5,10-methylenetetrahydrofolate reductase compare
PP_1994 -1.7 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_4895 -1.7 -2.5 tRNA dimethylallyltransferase compare
PP_2714 -1.7 -5.5 Sensor histidine kinase compare
PP_5184 -1.7 -3.6 glutamylpolyamine synthetase compare
PP_1681 -1.7 -7.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5430 -1.7 -2.8 protein of unknown function compare
PP_1493 -1.7 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5610 -1.7 -2.0 protein of unknown function compare
PP_5310 -1.6 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_2681 -1.6 -2.0 coenzyme PQQ synthesis protein D compare
PP_1198 -1.6 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2337 -1.6 -2.0 aconitate isomerase compare
PP_1309 -1.6 -5.2 conserved exported protein of unknown function compare
PP_4120 -1.6 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_4828 -1.6 -1.2 Precorrin-8X methylmutase compare
PP_0001 -1.5 -1.5 probable chromosome-partitioning protein compare
PP_5230 -1.5 -2.8 Tyrosine recombinase XerC compare
PP_0232 -1.5 -1.2 ATP-binding taurine transporter subunit compare
PP_2302 -1.5 -4.2 DNA-binding, ATP-dependent protease compare
PP_3946 -1.5 -1.4 HTH-type transcriptional repressor NicR compare
PP_3398 -1.5 -1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5267 -1.5 -2.0 putative cytochrome c5 compare
PP_4695 -1.5 -6.3 Sensory box histidine kinase compare
PP_3506 -1.5 -3.1 Magnesium chelatase, subunit ChII compare
PP_4832 -1.5 -2.2 Precorrin-6x reductase compare
PP_1362 -1.5 -2.8 pyruvate kinase II compare
PP_1623 -1.5 -5.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_5557 -1.5 -1.9 protein of unknown function compare
PP_5507 -1.5 -2.0 protein of unknown function compare
PP_1348 -1.5 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4363 -1.4 -6.1 Sensor histidine kinase/response regulator compare
PP_5429 -1.4 -2.7 protein of unknown function compare
PP_3522 -1.4 -1.6 conserved protein of unknown function compare
PP_1099 -1.4 -1.1 Cold shock protein CapB compare
PP_1654 -1.4 -1.5 cysteine synthase B compare
PP_4333 -1.4 -5.3 CheW domain protein compare
PP_2375 -1.4 -7.2 cobalamin-dependent methionine synthase compare
PP_4964 -1.3 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_1055 -1.3 -1.1 Type II secretion pathway protein GspN compare
PP_4004 -1.3 -2.7 DNA translocase FtsK compare
PP_1677 -1.3 -3.3 Adenosyl-cobyric acid synthase compare
PP_5232 -1.3 -1.1 conserved protein of unknown function compare
PP_2044 -1.3 -1.6 conserved inner membrane protein of unknown function compare
PP_4693 -1.3 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_4131 -1.3 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_2137 -1.3 -1.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_5500 -1.3 -1.6 protein of unknown function compare
PP_4824 -1.3 -4.5 Sensor histidine kinase/response regulator compare
PP_0725 -1.3 -2.4 conserved hypothetical TPR repeat protein compare
PP_4129 -1.2 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0345 -1.2 -3.2 putative Heptose kinase WapP compare
PP_1491 -1.2 -2.4 CheW domain protein compare
PP_1734 -1.2 -2.0 Probable septum site-determining protein MinC compare
PP_2322 -1.2 -2.5 Major outer membrane lipoprotein compare
PP_1381 -1.2 -1.0 4-carboxymuconolactone decarboxylase compare
PP_4993 -1.2 -3.9 Glutathione synthetase compare
PP_4273 -1.2 -1.3 Transcriptional regulator, MerR family compare
PP_1716 -1.2 -1.9 Transcriptional regulator, Cro/CI family compare
PP_3821 -1.2 -4.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1122 -1.2 -1.1 OmpA family protein compare
PP_4098 -1.1 -1.6 UvrABC system protein C compare
PP_3507 -1.1 -6.2 Aerobic cobaltochelatase subunit CobN compare
PP_4768 -1.1 -2.1 Exonuclease compare
PP_4406 -1.1 -2.1 conserved protein of unknown function compare
PP_0846 -1.1 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_4332 -1.1 -2.8 Chemotaxis protein CheW compare
PP_4320 -1.1 -2.6 cytochrome c-type biogenesis protein compare
PP_3627 -1.1 -2.0 conserved protein of unknown function compare
PP_2335 -1.1 -3.6 methylcitrate synthase compare
PP_1467 -1.1 -4.9 NhaP-type Na+(K+)/H+ antiporter compare
PP_1673 -1.1 -4.2 cobyrinate a,c-diamide synthase compare
PP_4122 -1.1 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1304 -1.1 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4364 -1.1 -1.9 putative Anti-sigma F factor antagonist compare
PP_1444 -1.1 -5.4 quinoprotein glucose dehydrogenase compare


Specific Phenotypes

For 8 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms