Experiment set22IT005 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.7 -6.6 Indole-3-glycerol phosphate synthase compare
PP_0293 -6.6 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -6.1 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_1079 -6.1 -7.2 Ornithine carbamoyltransferase compare
PP_3417 -6.1 -7.2 D-gluconate transporter compare
PP_5185 -5.9 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -5.5 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3511 -5.4 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_1995 -5.4 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5348 -5.3 -10.9 Transcriptional regulator, LysR family compare
PP_5289 -5.2 -5.1 Acetylglutamate kinase compare
PP_0967 -5.1 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.0 -10.2 3-isopropylmalate dehydrogenase compare
PP_0082 -5.0 -7.7 tryptophan synthase alpha chain compare
PP_0420 -4.9 -12.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1898 -4.9 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4678 -4.9 -16.7 Ketol-acid reductoisomerase compare
PP_0965 -4.8 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -4.8 -8.1 tryptophan synthase beta chain compare
PP_4890 -4.7 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0289 -4.7 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_2327 -4.7 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0787 -4.7 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4679 -4.7 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -4.6 -10.8 Histidinol dehydrogenase compare
PP_4099 -4.6 -34.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0417 -4.6 -20.4 Anthranilate synthase component 1 compare
PP_1650 -4.6 -24.7 Sensor protein GacS compare
PP_1088 -4.6 -13.7 Argininosuccinate synthase compare
PP_5014 -4.5 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -4.4 -6.0 Nitrogen regulation protein NR(I) compare
PP_2371 -4.3 -7.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5347 -4.3 -12.9 pyruvate carboxylase subunit A compare
PP_4804 -4.3 -2.9 RlpA-like lipoprotein compare
PP_5075 -4.3 -15.5 glutamate synthase (NADPH) beta subunit compare
PP_1231 -4.2 -7.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -4.2 -16.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -4.1 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1022 -4.1 -4.8 glucose 6-phosphate-1-dehydrogenase compare
PP_1985 -4.0 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_4122 -4.0 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2001 -4.0 -12.4 O-succinylhomoserine sulfhydrylase compare
PP_5128 -4.0 -8.6 Dihydroxy-acid dehydratase compare
PP_5097 -4.0 -12.8 homoserine O-acetyltransferase compare
PP_2328 -3.9 -7.9 Phosphoadenosine phosphosulfate reductase compare
PP_0421 -3.9 -6.8 Anthranilate phosphoribosyltransferase compare
PP_2433 -3.9 -2.9 conserved protein of unknown function compare
PP_4909 -3.8 -8.0 phosphoserine phosphatase compare
PP_0166 -3.7 -12.9 HlyD family secretion protein compare
PP_5303 -3.7 -5.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5076 -3.7 -17.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_5098 -3.6 -7.6 methionine biosynthesis protein MetW compare
PP_3999 -3.6 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -3.6 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4984 -3.6 -10.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0184 -3.6 -7.8 Argininosuccinate lyase compare
PP_0365 -3.5 -8.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0165 -3.5 -14.1 GGDEF domain protein compare
PP_0167 -3.5 -14.7 Toxin secretion ATP-binding protein compare
PP_4785 -3.4 -7.0 conserved exported protein of unknown function compare
PP_4699 -3.4 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1733 -3.4 -5.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1216 -3.3 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0363 -3.3 -11.9 8-amino-7-oxononanoate synthase compare
PP_0364 -3.3 -7.3 pimeloyl-[acp] methyl ester esterase compare
PP_1912 -3.3 -6.6 Phosphate acyltransferase compare
PP_t12 -3.3 -1.3 tRNA-Thr compare
PP_0362 -3.3 -12.4 Biotin synthase compare
PP_3946 -3.3 -1.8 HTH-type transcriptional repressor NicR compare
PP_0366 -3.3 -6.2 dethiobiotin synthetase compare
PP_2348 -3.2 -8.0 Sensor histidine kinase compare
PP_4874 -3.2 -1.7 50S ribosomal protein L9 compare
PP_5350 -3.2 -5.3 Transcriptional regulator, RpiR family compare
PP_5328 -3.2 -2.2 putative phosphate transport system permease protein compare
PP_0168 -3.2 -17.1 putative surface adhesion protein compare
PP_4519 -3.2 -10.6 Agglutination protein compare
PP_2168 -3.1 -9.2 Transaldolase compare
PP_2414 -3.1 -2.3 conserved exported protein of unknown function compare
PP_4902 -3.1 -3.4 Oligoribonuclease compare
PP_5346 -3.0 -5.9 pyruvate carboxylase subunit B compare
PP_2136 -3.0 -4.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5217 -3.0 -10.0 Polyphosphate kinase compare
PP_4994 -2.9 -4.6 conserved protein of unknown function compare
PP_5104 -2.9 -7.0 thiazole synthase compare
PP_4782 -2.9 -4.9 Phosphomethylpyrimidine kinase compare
PP_0065 -2.8 -4.6 NAD-binding component of TrK potassium transporter compare
PP_1428 -2.8 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_0292 -2.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0368 -2.7 -9.8 putative Acyl-CoA dehydrogenase compare
PP_2052 -2.7 -9.2 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_5500 -2.7 -3.9 protein of unknown function compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_4922 -2.6 -9.1 Phosphomethylpyrimidine synthase compare
PP_2145 -2.6 -3.6 beta-N-acetylglucosaminidase compare
PP_1778 -2.6 -6.1 Lipopolysaccharide ABC export system, permease protein compare
PP_4131 -2.5 -7.7 NADH-quinone oxidoreductase subunit N compare
PP_5095 -2.5 -1.4 pyrroline-5-carboxylate reductase compare
PP_1025 -2.5 -6.7 2-isopropylmalate synthase compare
PP_1233 -2.4 -4.7 sulfurtransferase compare
PP_2756 -2.3 -3.3 conserved protein of unknown function compare
PP_0547 -2.3 -4.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4471 -2.2 -4.7 Magnesium transporter compare
PP_4340 -2.2 -3.9 response regulator for chemotactic signal transduction compare
PP_4338 -2.1 -6.7 Chemotaxis histidine kinase CheA compare
PP_5329 -2.1 -1.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1672 -2.1 -5.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4977 -2.1 -8.4 5,10-methylenetetrahydrofolate reductase compare
PP_1348 -2.1 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1528 -2.0 -1.6 conserved protein of unknown function compare
PP_1677 -2.0 -4.3 Adenosyl-cobyric acid synthase compare
PP_4693 -1.9 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_0127 -1.9 -2.8 Thiol:disulfide interchange protein compare
PP_1654 -1.9 -3.2 cysteine synthase B compare
PP_1198 -1.9 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2581 -1.8 -1.6 conserved protein of unknown function compare
PP_1656 -1.8 -6.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_1994 -1.8 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_0719 -1.8 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5035 -1.8 -4.8 Histidine utilization repressor compare
PP_2714 -1.7 -5.2 Sensor histidine kinase compare
PP_4004 -1.7 -3.0 DNA translocase FtsK compare
PP_1041 -1.7 -2.2 twin arginine protein export complex subunit compare
PP_0789 -1.7 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0291 -1.7 -2.6 conserved protein of unknown function compare
PP_4880 -1.7 -8.0 exoribonuclease R compare
PP_1681 -1.7 -7.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2375 -1.6 -9.6 cobalamin-dependent methionine synthase compare
PP_1987 -1.6 -2.1 Methlytransferase, UbiE/COQ5 family compare
PP_4895 -1.6 -2.4 tRNA dimethylallyltransferase compare
PP_2121 -1.6 -1.6 putative Lipoprotein compare
PP_0435 -1.6 -5.3 Peptidase, M23/M37 family compare
PP_4121 -1.6 -5.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1678 -1.6 -3.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4695 -1.6 -6.5 Sensory box histidine kinase compare
PP_1309 -1.6 -3.5 conserved exported protein of unknown function compare
PP_0434 -1.6 -3.5 Anhydro-N-acetylmuramic acid kinase compare
PP_2335 -1.6 -4.3 methylcitrate synthase compare
PP_5253 -1.5 -1.9 Arylesterase compare
PP_2345 -1.5 -2.4 conserved exported protein of unknown function compare
PP_0735 -1.5 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_1217 -1.5 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1004 -1.5 -1.6 conserved protein of unknown function compare
PP_1675 -1.5 -5.4 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1493 -1.5 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4098 -1.5 -1.9 UvrABC system protein C compare
PP_3580 -1.5 -1.6 conserved protein of unknown function compare
PP_4830 -1.4 -3.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_0377 -1.4 -1.6 coenzyme PQQ synthesis protein D compare
PP_0630 -1.4 -1.0 DNA gyrase inhibitor YacG compare
PP_1623 -1.4 -5.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_5321 -1.4 -6.0 two-component system sensory histidine kinase compare
PP_5429 -1.4 -3.4 protein of unknown function compare
PP_4828 -1.4 -0.8 Precorrin-8X methylmutase compare
PP_2302 -1.4 -2.9 DNA-binding, ATP-dependent protease compare
PP_0405 -1.4 -4.8 conserved protein of unknown function compare
PP_1673 -1.4 -3.1 cobyrinate a,c-diamide synthase compare
PP_1679 -1.3 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4827 -1.3 -5.9 Precorrin-2 C(20)-methyltransferase compare
PP_0612 -1.3 -6.3 FAD-dependent glycine/D-amino acid oxidase compare
PP_3603 -1.3 -4.6 Transcriptional regulator, GntR family compare
PP_2929 -1.3 -5.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4829 -1.3 -1.6 putative precorrin-3B synthase compare
PP_4910 -1.3 -1.5 conserved protein of unknown function compare
PP_0401 -1.3 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_0627 -1.3 -1.6 conserved protein of unknown function compare
PP_5100 -1.3 -1.4 dITP/XTP pyrophosphatase compare
PP_3035 -1.3 -1.8 conserved protein of unknown function compare
PP_2932 -1.2 -5.2 Amidase family protein compare
PP_4848 -1.2 -2.0 Curved DNA-binding protein compare
PP_1734 -1.2 -2.6 Probable septum site-determining protein MinC compare
PP_1444 -1.2 -6.3 quinoprotein glucose dehydrogenase compare
PP_2137 -1.2 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_4952 -1.2 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3245 -1.2 -1.3 conserved protein of unknown function compare
PP_4126 -1.2 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_4129 -1.2 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0406 -1.2 -1.6 Nucleotidyltransferase family protein compare
PP_0261 -1.2 -2.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4332 -1.2 -2.9 Chemotaxis protein CheW compare
PP_2334 -1.2 -3.0 2-methylisocitrate lyase compare
PP_4993 -1.2 -3.1 Glutathione synthetase compare
PP_5331 -1.2 -1.6 Long-chain acyl-CoA thioester hydrolase compare
PP_3899 -1.2 -1.9 conserved protein of unknown function, hicB family compare
PP_3829 -1.2 -2.7 Molybdenum transport system permease protein ModB compare
PP_1304 -1.2 -5.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4130 -1.2 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2054 -1.1 -2.4 putative DNA-binding transcriptional regulator compare
PP_5028 -1.1 -2.6 proline iminopeptidase compare
PP_4392 -1.1 -3.8 chemotaxis protein methyltransferase compare
PP_0610 -1.1 -1.8 conserved exported protein of unknown function compare
PP_0022 -1.1 -0.8 hypothetical protein compare
PP_4387 -1.1 -2.4 conserved exported protein of unknown function compare
PP_1779 -1.1 -3.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5107 -1.1 -1.9 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_0962 -1.1 -1.7 toluene-tolerance protein compare
PP_1764 -1.1 -1.6 Phosphoglycolate phosphatase 2 compare
PP_5145 -1.1 -6.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0910 -1.1 -3.9 conserved exported protein of unknown function compare
PP_2370 -1.1 -0.9 conserved protein of unknown function compare
PP_5320 -1.1 -2.9 two-component system DNA-binding transcriptional dual response regulator PhoB compare


Specific Phenotypes

For 7 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms