Experiment set22IT004 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1985 -6.7 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.7 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3417 -6.2 -7.3 D-gluconate transporter compare
PP_1986 -6.1 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_3511 -6.1 -9.3 Branched-chain-amino-acid aminotransferase compare
PP_2370 -6.0 -3.9 conserved protein of unknown function compare
PP_1898 -5.8 -4.9 MotA/TolQ/ExbB proton channel family protein compare
PP_0422 -5.7 -6.3 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.5 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -5.5 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -5.4 -13.1 Histidinol dehydrogenase compare
PP_1988 -5.4 -11.4 3-isopropylmalate dehydrogenase compare
PP_2348 -5.3 -7.7 Sensor histidine kinase compare
PP_1231 -5.2 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4678 -5.1 -17.4 Ketol-acid reductoisomerase compare
PP_4680 -5.0 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -4.9 -8.2 tryptophan synthase alpha chain compare
PP_5289 -4.8 -4.9 Acetylglutamate kinase compare
PP_0083 -4.8 -8.1 tryptophan synthase beta chain compare
PP_4994 -4.8 -5.6 conserved protein of unknown function compare
PP_0965 -4.8 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -4.8 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1088 -4.7 -13.3 Argininosuccinate synthase compare
PP_5347 -4.7 -12.9 pyruvate carboxylase subunit A compare
PP_1632 -4.7 -1.8 conserved protein of unknown function compare
PP_0417 -4.6 -17.6 Anthranilate synthase component 1 compare
PP_5098 -4.6 -9.1 methionine biosynthesis protein MetW compare
PP_4679 -4.5 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5075 -4.5 -15.9 glutamate synthase (NADPH) beta subunit compare
PP_4099 -4.5 -32.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2327 -4.4 -6.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5348 -4.4 -10.1 Transcriptional regulator, LysR family compare
PP_4782 -4.4 -6.5 Phosphomethylpyrimidine kinase compare
PP_1650 -4.4 -21.8 Sensor protein GacS compare
PP_4943 -4.3 -3.0 putative Glycosyl transferase compare
PP_5185 -4.3 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -4.3 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5097 -4.2 -13.7 homoserine O-acetyltransferase compare
PP_1079 -4.1 -7.5 Ornithine carbamoyltransferase compare
PP_0184 -4.1 -8.4 Argininosuccinate lyase compare
PP_5076 -4.1 -19.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_4890 -4.1 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0291 -4.0 -3.7 conserved protein of unknown function compare
PP_5128 -4.0 -9.1 Dihydroxy-acid dehydratase compare
PP_5327 -4.0 -3.9 putative phosphate ABC transporter, permease subunit compare
PP_2001 -4.0 -7.6 O-succinylhomoserine sulfhydrylase compare
PP_5346 -3.9 -9.0 pyruvate carboxylase subunit B compare
PP_5303 -3.9 -7.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0366 -3.8 -6.3 dethiobiotin synthetase compare
PP_0292 -3.8 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -3.8 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4902 -3.8 -3.6 Oligoribonuclease compare
PP_0787 -3.8 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3999 -3.7 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5104 -3.7 -9.6 thiazole synthase compare
PP_0368 -3.7 -11.3 putative Acyl-CoA dehydrogenase compare
PP_0420 -3.7 -11.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -3.7 -7.0 Anthranilate phosphoribosyltransferase compare
PP_1022 -3.6 -6.4 glucose 6-phosphate-1-dehydrogenase compare
PP_4909 -3.6 -8.5 phosphoserine phosphatase compare
PP_5014 -3.5 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -3.5 -7.0 Nitrogen regulation protein NR(I) compare
PP_2371 -3.4 -6.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0363 -3.4 -11.3 8-amino-7-oxononanoate synthase compare
PP_4126 -3.3 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_1912 -3.3 -6.2 Phosphate acyltransferase compare
PP_4519 -3.2 -10.7 Agglutination protein compare
PP_0364 -3.2 -7.8 pimeloyl-[acp] methyl ester esterase compare
PP_2337 -3.2 -4.2 aconitate isomerase compare
PP_0362 -3.2 -12.5 Biotin synthase compare
PP_0168 -3.2 -16.7 putative surface adhesion protein compare
PP_1381 -3.2 -1.5 4-carboxymuconolactone decarboxylase compare
PP_0167 -3.1 -14.5 Toxin secretion ATP-binding protein compare
PP_2328 -3.1 -8.4 Phosphoadenosine phosphosulfate reductase compare
PP_2168 -3.1 -10.9 Transaldolase compare
PP_0165 -3.1 -13.6 GGDEF domain protein compare
PP_5217 -3.0 -10.3 Polyphosphate kinase compare
PP_0566 -3.0 -1.4 translation-related factor compare
PP_4699 -3.0 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1216 -3.0 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2136 -3.0 -5.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1198 -2.9 -3.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0166 -2.9 -11.2 HlyD family secretion protein compare
PP_4922 -2.9 -13.3 Phosphomethylpyrimidine synthase compare
PP_4984 -2.8 -11.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5155 -2.8 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4785 -2.8 -4.5 conserved exported protein of unknown function compare
PP_1428 -2.8 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_2137 -2.7 -3.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_1733 -2.6 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_5095 -2.6 -1.4 pyrroline-5-carboxylate reductase compare
PP_5508 -2.6 -1.5 conserved protein of unknown function compare
PP_0365 -2.6 -8.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4828 -2.6 -1.7 Precorrin-8X methylmutase compare
PP_2403 -2.5 -1.7 Chemotaxis protein CheY compare
PP_0547 -2.5 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2499 -2.5 -1.7 conserved protein of unknown function compare
PP_2052 -2.5 -6.8 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_1025 -2.5 -9.0 2-isopropylmalate synthase compare
PP_2714 -2.4 -5.2 Sensor histidine kinase compare
PP_4471 -2.4 -4.6 Magnesium transporter compare
PP_0001 -2.4 -2.2 probable chromosome-partitioning protein compare
PP_2322 -2.4 -3.9 Major outer membrane lipoprotein compare
PP_5610 -2.3 -2.0 protein of unknown function compare
PP_1468 -2.3 -1.8 Tyrosine recombinase XerD compare
PP_0846 -2.3 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4874 -2.3 -1.6 50S ribosomal protein L9 compare
PP_4804 -2.3 -3.1 RlpA-like lipoprotein compare
PP_1764 -2.3 -3.9 Phosphoglycolate phosphatase 2 compare
PP_1783 -2.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_5429 -2.2 -3.7 protein of unknown function compare
PP_3883 -2.1 -2.1 putative Phage holin compare
PP_0435 -2.1 -7.2 Peptidase, M23/M37 family compare
PP_4120 -2.1 -4.1 NADH-quinone oxidoreductase subunit B compare
PP_1348 -2.1 -6.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5350 -2.1 -4.1 Transcriptional regulator, RpiR family compare
PP_0065 -2.1 -3.9 NAD-binding component of TrK potassium transporter compare
PP_1097 -2.1 -1.3 Methionine--tRNA ligase compare
PP_1353 -2.1 -2.6 conserved membrane protein of unknown function compare
PP_4700 -2.0 -2.7 pantothenate synthetase compare
PP_1673 -2.0 -5.8 cobyrinate a,c-diamide synthase compare
PP_0735 -2.0 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1309 -1.9 -5.6 conserved exported protein of unknown function compare
PP_4129 -1.9 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4832 -1.9 -4.5 Precorrin-6x reductase compare
PP_1778 -1.9 -5.3 Lipopolysaccharide ABC export system, permease protein compare
PP_4829 -1.8 -2.8 putative precorrin-3B synthase compare
PP_2433 -1.8 -1.9 conserved protein of unknown function compare
PP_4320 -1.8 -2.9 cytochrome c-type biogenesis protein compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_5328 -1.8 -2.4 putative phosphate transport system permease protein compare
PP_5500 -1.8 -2.8 protein of unknown function compare
PP_4977 -1.8 -7.1 5,10-methylenetetrahydrofolate reductase compare
PP_3392 -1.7 -1.8 conserved protein of unknown function compare
PP_0025 -1.7 -1.2 hypothetical protein compare
PP_1233 -1.7 -3.8 sulfurtransferase compare
PP_0406 -1.7 -2.5 Nucleotidyltransferase family protein compare
PP_2302 -1.7 -4.1 DNA-binding, ATP-dependent protease compare
PP_0593 -1.7 -1.0 putative ribosome-binding factor compare
PP_2388 -1.7 -3.4 Transporter, LysE family compare
PP_4338 -1.7 -6.2 Chemotaxis histidine kinase CheA compare
PP_1623 -1.7 -6.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_4532 -1.7 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2375 -1.6 -9.0 cobalamin-dependent methionine synthase compare
PP_5329 -1.6 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3314 -1.6 -3.9 Heat shock protein, HSP20 family compare
PP_1041 -1.6 -2.1 twin arginine protein export complex subunit compare
PP_4124 -1.6 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_4910 -1.6 -2.3 conserved protein of unknown function compare
PP_0725 -1.6 -3.4 conserved hypothetical TPR repeat protein compare
PP_1675 -1.6 -6.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3105 -1.6 -1.7 conserved membrane protein of unknown function compare
PP_5320 -1.6 -4.8 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_1677 -1.5 -4.3 Adenosyl-cobyric acid synthase compare
PP_1892 -1.5 -2.7 conserved protein of unknown function compare
PP_2145 -1.5 -2.5 beta-N-acetylglucosaminidase compare
PP_4964 -1.5 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4364 -1.5 -3.4 putative Anti-sigma F factor antagonist compare
PP_5216 -1.5 -1.4 exopolyphosphatase compare
PP_1656 -1.5 -4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1553 -1.5 -1.6 conserved protein of unknown function compare
PP_4131 -1.5 -5.1 NADH-quinone oxidoreductase subunit N compare
PP_4340 -1.4 -2.4 response regulator for chemotactic signal transduction compare
PP_4827 -1.4 -7.0 Precorrin-2 C(20)-methyltransferase compare
PP_0910 -1.4 -5.2 conserved exported protein of unknown function compare
PP_0612 -1.4 -6.8 FAD-dependent glycine/D-amino acid oxidase compare
PP_3507 -1.4 -7.8 Aerobic cobaltochelatase subunit CobN compare
PP_2414 -1.4 -1.0 conserved exported protein of unknown function compare
PP_0153 -1.4 -1.6 hypothetical protein compare
PP_0888 -1.4 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_5248 -1.3 -1.4 putative hydrolase compare
PP_0164 -1.3 -3.1 conserved protein of unknown function compare
PP_3649 -1.3 -2.8 Transcriptional regulator, GntR family compare
PP_2878 -1.3 -2.1 conserved protein of unknown function compare
PP_1310 -1.3 -1.7 conserved hypothetical protein compare
PP_4695 -1.3 -6.3 Sensory box histidine kinase compare
PP_t12 -1.3 -0.9 tRNA-Thr compare
PP_2402 -1.3 -1.6 putative Sensor histidine kinase compare
PP_2442 -1.3 -1.8 conserved protein of unknown function, DUF480 family compare
PP_1994 -1.3 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_4392 -1.3 -5.4 chemotaxis protein methyltransferase compare
PP_0957 -1.3 -1.0 D-arabinose 5-phosphate isomerase compare
PP_0434 -1.3 -3.7 Anhydro-N-acetylmuramic acid kinase compare
PP_0972 -1.2 -2.9 UPF0213 protein PP_0972 compare
PP_4004 -1.2 -2.6 DNA translocase FtsK compare
PP_1672 -1.2 -4.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1679 -1.2 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3508 -1.2 -2.6 Protein CobW compare
PP_4130 -1.2 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4826 -1.2 -3.2 Precorrin-3B C17-methyltransferase compare
PP_4268 -1.2 -1.1 nucleoid-associated broad specificity regulator compare
PP_5090 -1.2 -1.7 putative cell division protein compare
PP_1683 -1.2 -1.4 Transcriptional regulator, MarR family compare
PP_5230 -1.2 -2.3 Tyrosine recombinase XerC compare
PP_1845 -1.2 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_3307 -1.2 -0.9 conserved protein of unknown function compare
PP_2335 -1.2 -3.9 methylcitrate synthase compare
PP_2928 -1.2 -5.0 Saccharopine dehydrogenase compare
PP_3563 -1.2 -1.4 conserved exported protein of unknown function compare
PP_0550 -1.2 -2.1 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms