Experiment set22IT004 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_4944 +3.0 6.5 Carbamoyltransferase compare
PP_5337 +2.3 11.2 LysR family transcriptional regulator compare
PP_2088 +2.3 6.7 RNA polymerase sigma factor SigX compare
PP_0137 +2.1 11.4 glutamate/aspartate-proton DAACS transporter compare
PP_1067 +2.0 12.4 Sensor histidine kinase compare
PP_4942 +1.9 4.1 conserved protein of unknown function compare
PP_4941 +1.9 8.3 conserved exported protein of unknown function compare
PP_0276 +1.9 2.9 Transcriptional regulator, Cro/CI family compare
PP_4482 +1.8 5.3 Transcriptional regulator, AraC family compare
PP_1066 +1.8 9.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0393 +1.8 3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4892 +1.7 8.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1142 +1.5 2.0 conserved protein of unknown function compare
PP_5604 +1.5 1.8 putative subtilisin-like serine protease compare
PP_4891 +1.4 5.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2847 +1.4 2.5 Urease accessory protein UreJ compare
PP_4946 +1.4 7.9 sodium/L-proline transporter compare
PP_0804 +1.3 6.5 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_1824 +1.3 2.6 Smr domain protein compare
PP_5140 +1.3 3.5 Transcriptional regulator, MerR family compare
PP_5705 +1.3 3.1 protein of unknown function compare
PP_4629 +1.2 4.6 Sensory box protein compare
PP_0574 +1.2 7.6 DNA-binding response regulator, LuxR family compare
PP_2280 +1.2 1.8 conserved protein of unknown function compare
PP_0135 +1.2 3.6 conserved exported protein of unknown function compare
PP_3930 +1.2 1.9 conserved exported protein of unknown function compare
PP_3415 +1.2 3.7 Transcriptional regulator, LacI family conserved
PP_5052 +1.1 4.1 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2029 +1.1 2.1 von Willebrand factor type A domain protein compare
PP_0806 +1.1 9.9 putative Surface adhesion protein compare
PP_0805 +1.1 6.4 Outer membrane efflux protein compare
PP_2030 +1.1 3.8 conserved protein of unknown function compare
PP_3903 +1.1 1.8 conserved protein of unknown function compare
PP_2118 +1.1 1.9 conserved protein of unknown function compare
PP_4379 +1.0 2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1605 +1.0 2.2 Ribonuclease HII compare
PP_0803 +1.0 4.7 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4273 +1.0 1.8 Transcriptional regulator, MerR family compare
PP_1713 +1.0 2.0 Transcriptional regulator PcaQ compare
PP_2749 +1.0 3.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4904 +1.0 4.5 Flagellar motor rotation protein compare
PP_3902 +0.9 1.8 conserved protein of unknown function compare
PP_5453 +0.9 1.6 conserved protein of unknown function compare
PP_4262 +0.9 2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1000 +0.9 2.9 ornithine carbamoyltransferase, catabolic compare
PP_5240 +0.9 2.3 Response regulator compare
PP_5546 +0.9 1.2 conserved protein of unknown function compare
PP_4361 +0.9 4.5 Flagellar hook-length control protein FliK compare
PP_5428 +0.9 2.2 conserved exported protein of unknown function compare
PP_5393 +0.9 1.6 putative metal-binding chaperone compare
PP_4669 +0.9 1.6 OmpA family protein compare
PP_1122 +0.9 1.6 OmpA family protein compare
PP_4760 +0.8 3.0 Alcohol dehydrogenase, zinc-containing compare
PP_4396 +0.8 2.7 conserved protein of unknown function compare
PP_3052 +0.8 1.1 conserved protein of unknown function compare
PP_2379 +0.8 2.8 putative cytochrome oxidase biogenesis protein compare
PP_3580 +0.8 1.1 conserved protein of unknown function compare
PP_3685 +0.8 2.1 conserved protein of unknown function compare
PP_0240 +0.8 2.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5218 +0.8 2.7 DedA family protein compare
PP_3726 +0.8 0.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_3073 +0.8 4.1 3-hydroxybutyrate dehydrogenase compare
PP_0152 +0.8 0.8 conserved exported protein of unknown function compare
PP_1646 +0.8 1.9 putative Thioredoxin compare
PP_0995 +0.8 3.6 conserved membrane protein of unknown function compare
PP_2650 +0.8 1.6 putative 4-hydroxybutyrate dehydrogenase compare
PP_2122 +0.8 1.9 molybdenum cofactor biosynthesis protein B compare
PP_0185 +0.8 3.9 Positive alginate biosynthesis regulatory protein compare
PP_5457 +0.8 3.2 conserved protein of unknown function compare
PP_1864 +0.8 1.4 conserved protein of unknown function compare
PP_5748 +0.8 0.8 cytochrome c heme lyase subunit compare
PP_5073 +0.8 1.4 conserved exported protein of unknown function compare
PP_1087 +0.8 3.6 Outer membrane protein, OmpA family compare
PP_5093 +0.8 1.3 twitching motility protein compare
PP_1410 +0.8 0.7 conserved protein of unknown function compare
PP_5324 +0.7 1.5 Response regulator compare
PP_1002 +0.7 2.5 arginine/ornithine antiporter compare
PP_0711 +0.7 1.7 putative hydrolase compare
PP_2581 +0.7 1.0 conserved protein of unknown function compare
PP_1562 +0.7 1.7 putative Phage terminase, small subunit compare
PP_2203 +0.7 1.6 conserved protein of unknown function compare
PP_4390 +0.7 4.3 flagellar basal-body rod protein FlgC compare
PP_2456 +0.7 2.2 D-ribose ABC transporter - permease subunit compare
PP_2716 +0.7 1.9 arsenate reductase compare
PP_1036 +0.7 4.1 membrane-bound lytic murein transglycosylase F compare
PP_1096 +0.7 1.0 putative electron transport complex protein compare
PP_0594 +0.7 3.8 Transcriptional regulator, TetR family compare
PP_4961 +0.7 1.5 putative Lipoprotein compare
PP_1578 +0.7 2.5 conserved protein of unknown function compare
PP_1445 +0.7 3.6 carbohydrate-selective porin compare
PP_1982 +0.7 2.0 small heat shock protein IbpA compare
PP_2028 +0.7 2.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4271 +0.7 0.8 conserved protein of unknown function compare
PP_0254 +0.7 2.5 conserved protein of unknown function compare
PP_4483 +0.7 2.9 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_2575 +0.7 0.8 conserved exported protein of unknown function compare
PP_1664 +0.7 1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_1906 +0.7 2.3 ribosomal large subunit pseudouridine synthase C compare
PP_1568 +0.7 1.0 conserved protein of unknown function compare
PP_0114 +0.7 2.8 methionine ABC transporter ATP-binding protein compare
PP_3353 +0.7 2.3 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_5084 +0.7 4.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0874 +0.7 1.2 conserved protein of unknown function compare
PP_3874 +0.7 1.8 conserved protein of unknown function compare
PP_4905 +0.7 2.5 Flagellar motor rotation protein compare
PP_3049 +0.7 2.7 conserved protein of unknown function compare
PP_5667 +0.7 2.7 putative microcin B17-like-processing protein, McbC family compare
PP_4561 +0.7 0.7 stress response protein compare
PP_1787 +0.7 2.0 conserved protein of unknown function compare
PP_0136 +0.7 1.8 conserved exported protein of unknown function compare
PP_2568 +0.7 0.9 Ring-cleaving dioxygenase compare
PP_2131 +0.6 2.2 DNA-binding ATPase involved in replication compare
PP_5247 +0.6 1.4 conserved protein of unknown function compare
PP_2441 +0.6 1.9 conserved protein of unknown function compare
PP_2013 +0.6 2.3 conserved protein of unknown function compare
PP_2101 +0.6 1.7 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_3773 +0.6 0.7 conserved protein of unknown function compare
PP_3341 +0.6 2.0 nickel-responsive regulator compare
PP_4184 +0.6 3.1 branched chain amino acid transporter compare
PP_0400 +0.6 3.4 CO2+/MG2+ efflux protein compare
PP_1515 +0.6 2.1 Transcriptional regulator, tetR family compare
PP_1513 +0.6 1.2 Ribosomal RNA small subunit methyltransferase J compare
PP_4386 +0.6 2.3 flagellar basal-body rod protein FlgF compare
PP_5569 +0.6 2.0 protein of unknown function of phage origin compare
PP_2171 +0.6 2.1 Transporter, LysE family compare
PP_1770 +0.6 1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4383 +0.6 1.9 Flagellar P-ring protein compare
PP_3239 +0.6 1.0 putative cointegrate resolution protein T Tn4652 compare
PP_4341 +0.6 3.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4391 +0.6 3.4 flagellar basal-body rod protein FlgB compare
PP_4837 +0.6 1.5 conserved protein of unknown function compare
PP_5745 +0.6 2.1 paraquat-inducible protein A compare
PP_5673 +0.6 3.0 putative D-alanine--D-alanine ligase compare
PP_1382 +0.6 2.6 putative porin-encoding gene compare
PP_4769 +0.6 1.7 conserved protein of unknown function compare
PP_t11 +0.6 1.2 tRNA-Lys compare
PP_0872 +0.6 1.9 Peptide chain release factor 3 compare
PP_5381 +0.6 2.4 hypothetical protein compare
PP_2748 +0.6 1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5580 +0.6 1.0 protein of unknown function compare
PP_4370 +0.6 2.3 Flagellar hook-basal body complex protein FliE compare
PP_3488 +0.6 1.8 Sco1/SenC family protein compare
PP_5542 +0.6 2.2 protein of unknown function compare
PP_5170 +0.6 1.6 sulfate ABC transporter, inner membrane subunit CysT compare
PP_4988 +0.6 2.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4344 +0.6 3.2 flagellar export pore protein compare
PP_3055 +0.6 2.0 Pyocin R2_PP, tail formation protein compare
PP_3770 +0.6 2.2 conserved protein of unknown function compare
PP_4488 +0.6 1.8 conserved exported protein of unknown function compare
PP_4342 +0.6 1.5 flagellar synthesis regulator, putative ATPase compare
PP_2950 +0.6 1.4 conserved protein of unknown function compare
PP_2121 +0.6 1.0 putative Lipoprotein compare
PP_1909 +0.6 1.7 putative septum formation protein compare
PP_1570 +0.6 1.4 Head-tail adaptor compare
PP_4937 +0.6 1.6 toluene tolerance protein compare
PP_0886 +0.6 1.5 conserved exported protein of unknown function compare
PP_1827 +0.6 2.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_3244 +0.6 1.1 Magnesium transporter, MgtC family compare
PP_4479 +0.6 2.2 arginine N-succinyltransferase, subunit beta compare
PP_3640 +0.6 1.6 Transcriptional regulator, AraC family compare
PP_3227 +0.6 2.1 Transcriptional regulator, LysR family compare
PP_5693 +0.6 2.5 conserved protein of unknown function compare
PP_3901 +0.6 1.8 conserved protein of unknown function compare
PP_5475 +0.6 0.8 conserved protein of unknown function compare
PP_5038 +0.6 1.3 conserved lipoprotein of unknown function compare
PP_1267 +0.6 2.1 toxin endoribonuclease of toxin antitoxin system SohB(PrlF)-YhaV compare
PP_4389 +0.6 3.1 Flagellar basal-body rod modification protein FlgD compare
PP_1357 +0.6 3.4 conserved protein of unknown function compare
PP_3028 +0.6 1.8 conserved protein of unknown function compare
PP_3906 +0.6 1.5 conserved protein of unknown function compare
PP_5139 +0.6 1.7 cadmium translocating P-type ATPase compare
PP_1352 +0.6 1.6 UPF0234 protein PP_1352 compare
PP_2873 +0.6 2.1 conserved protein of unknown function, UPF0145 family compare
PP_5689 +0.6 1.8 conserved protein of unknown function compare
PP_3318 +0.5 0.8 conserved protein of unknown function compare
PP_1804 +0.5 2.6 Glycosyl transferase WbpL compare
PP_0508 +0.5 1.2 conserved exported protein of unknown function compare
PP_3729 +0.5 1.4 Periplasmic amino acid-binding protein-related protein compare
PP_2979 +0.5 1.4 conserved protein of unknown function compare
PP_2899 +0.5 0.7 conserved exported protein of unknown function compare
PP_5671 +0.5 2.3 conserved protein of unknown function compare
PP_5621 +0.5 0.9 protein of unknown function compare
PP_1959 +0.5 2.4 conserved protein of unknown function compare
PP_4528 +0.5 0.9 conserved protein of unknown function compare
PP_1455 +0.5 0.9 conserved protein of unknown function compare
PP_0903 +0.5 1.5 conserved protein of unknown function compare
PP_0487 +0.5 2.5 conserved membrane protein of unknown function compare
PP_5249 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_4358 +0.5 2.4 flagellar synthesis, switching and energizing component compare
PP_0333 +0.5 1.5 conserved exported protein of unknown function compare
PP_2826 +0.5 1.5 Transcriptional regulator MexT compare
PP_4352 +0.5 3.4 flagellin export apparatus, substrate specificity protein compare
PP_2330 +0.5 1.6 conserved protein of unknown function compare
PP_5109 +0.5 2.7 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_1317 +0.5 1.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3295 +0.5 1.8 YeeE/YedE family protein compare
PP_4073 +0.5 1.3 conserved exported protein of unknown function compare
PP_3551 +0.5 0.8 DNA-binding response regulator, LuxR family compare
PP_3971 +0.5 1.0 conserved protein of unknown function compare
PP_3315 +0.5 1.2 conserved membrane protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms