Experiment set22IT003 for Pseudomonas putida KT2440

Compare to:

Sodium ferulate carbon source; with MOPS

Genes with specific phenotypes:

  gene name fitness t score description  
PP_3736 -5.3 -10.2 vanillate O-demethylase oxygenase subunit compare
PP_1379 -4.7 -7.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_3358 -4.5 -8.3 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1150 -4.4 -8.7 putative Membrane protein compare
PP_4655 -4.2 -9.8 protocatechuate 3,4-dioxygenase alpha chain compare
PP_1152 -4.1 -9.5 putative membrane fusion efflux protein compare
PP_1377 -4.1 -7.2 beta-ketoadipyl-CoA thiolase compare
PP_1375 -4.0 -12.2 transcription regulatory protein (pca regulon) compare
PP_3737 -3.9 -9.4 vanillate O-demethylase oxidoreductase compare
PP_3952 -3.9 -7.3 3-oxoadipate CoA-transferase subunit A compare
PP_3356 -3.9 -12.8 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_2806 -3.8 -5.1 Transcriptional regulator, TetR family compare
PP_1367 -3.3 -5.1 formyltetrahydrofolate hydrolase compare
PP_0596 -2.7 -7.0 Omega-amino acid--pyruvate aminotransferase compare
PP_0904 -2.6 -6.9 InaA protein compare
PP_0413 -2.5 -8.9 Polyamine ABC transporter, permease protein compare
PP_4656 -2.4 -7.0 protocatechuate 3,4-dioxygenase beta chain compare
PP_5026 -2.4 -8.6 Glucans biosynthesis protein G compare
PP_0495 -2.2 -5.0 type 1 L-asparaginase compare
PP_0612 -2.1 -6.0 FAD-dependent glycine/D-amino acid oxidase compare
PP_1616 -2.0 -7.6 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5025 -1.7 -5.0 Glucans biosynthesis glucosyltransferase H compare
PP_4860 -1.7 -8.0 putative Mannose-6-phosphate isomerase compare
PP_4570 -1.7 -5.9 conserved protein of unknown function compare
PP_1378 -1.5 -5.2 alpha-ketoglutarate permease compare
PP_4398 +1.4 8.6 Major facilitator family transporter compare


Specific phenotypes for carbon source Sodium ferulate across organisms