Experiment set22IT002 for Pseudomonas putida KT2440

Compare to:

Sodium ferulate carbon source; with MOPS

Genes with specific phenotypes:

  gene name fitness t score description  
PP_3357 -5.9 -5.4 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_3358 -5.0 -9.7 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1152 -4.5 -9.8 putative membrane fusion efflux protein compare
PP_1150 -4.2 -7.0 putative Membrane protein compare
PP_3356 -4.0 -14.3 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_3736 -3.8 -11.4 vanillate O-demethylase oxygenase subunit compare
PP_1367 -3.8 -7.4 formyltetrahydrofolate hydrolase compare
PP_1377 -3.7 -8.4 beta-ketoadipyl-CoA thiolase compare
PP_1375 -3.5 -12.2 transcription regulatory protein (pca regulon) compare
PP_1379 -3.5 -6.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_3737 -3.5 -8.6 vanillate O-demethylase oxidoreductase compare
PP_3952 -3.4 -7.5 3-oxoadipate CoA-transferase subunit A compare
PP_4656 -3.2 -6.7 protocatechuate 3,4-dioxygenase beta chain compare
PP_4655 -3.1 -8.0 protocatechuate 3,4-dioxygenase alpha chain compare
PP_2806 -2.9 -5.6 Transcriptional regulator, TetR family compare
PP_0612 -2.9 -9.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_1616 -2.8 -8.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5026 -2.7 -8.6 Glucans biosynthesis protein G compare
PP_5025 -2.5 -7.9 Glucans biosynthesis glucosyltransferase H compare
PP_4260 -2.3 -5.1 conserved protein of unknown function compare
PP_0413 -2.3 -9.0 Polyamine ABC transporter, permease protein compare
PP_4923 -2.1 -7.8 Outer membrane efflux protein compare
PP_0596 -2.0 -6.8 Omega-amino acid--pyruvate aminotransferase compare
PP_2326 -1.8 -5.2 Universal stress protein compare
PP_3819 -1.8 -5.2 glutathione reductase (NADPH) compare
PP_4570 -1.6 -6.5 conserved protein of unknown function compare
PP_4860 -1.5 -6.5 putative Mannose-6-phosphate isomerase compare
PP_0904 -1.5 -5.3 InaA protein compare
PP_1378 -1.4 -5.4 alpha-ketoglutarate permease compare
PP_4514 -1.3 -6.0 putative esterase of the alpha-beta hydrolase superfamily compare
PP_4398 +1.3 8.0 Major facilitator family transporter compare


Specific phenotypes for carbon source Sodium ferulate across organisms