Experiment set22IT002 for Pseudomonas putida KT2440

Compare to:

Sodium ferulate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_2718 -6.1 -2.3 arsenic resistance transcriptional regulator compare
PP_2433 -5.9 -2.2 conserved protein of unknown function compare
PP_3357 -5.9 -5.4 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_3241 -5.4 -1.2 conserved exported protein of unknown function compare
PP_3951 -5.4 -5.7 3-oxoadipate CoA-transferase subunit A compare
PP_2370 -5.1 -2.7 conserved protein of unknown function compare
PP_3358 -5.0 -9.7 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1985 -5.0 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_4109 -5.0 -2.4 conserved protein of unknown function compare
PP_2168 -4.8 -12.3 Transaldolase compare
PP_2136 -4.7 -5.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1898 -4.7 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5027 -4.6 -2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0547 -4.6 -7.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0422 -4.5 -6.2 Indole-3-glycerol phosphate synthase compare
PP_5594 -4.5 -1.4 conserved protein of unknown function compare
PP_1152 -4.5 -9.8 putative membrane fusion efflux protein compare
PP_4937 -4.4 -5.3 toluene tolerance protein compare
PP_4364 -4.4 -4.1 putative Anti-sigma F factor antagonist compare
PP_0184 -4.4 -6.7 Argininosuccinate lyase compare
PP_2163 -4.4 -7.8 VacJ lipoprotein compare
PP_0967 -4.3 -10.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -4.3 -7.2 Branched-chain-amino-acid aminotransferase compare
PP_5289 -4.3 -4.4 Acetylglutamate kinase compare
PP_0966 -4.2 -10.5 Histidinol dehydrogenase compare
PP_1150 -4.2 -7.0 putative Membrane protein compare
PP_0346 -4.2 -8.7 putative Heptose kinase WapQ compare
PP_1988 -4.1 -8.7 3-isopropylmalate dehydrogenase compare
PP_1025 -4.1 -12.2 2-isopropylmalate synthase compare
PP_3356 -4.0 -14.3 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_2371 -4.0 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_2322 -3.9 -4.6 Major outer membrane lipoprotein compare
PP_5097 -3.8 -11.2 homoserine O-acetyltransferase compare
PP_0406 -3.8 -2.5 Nucleotidyltransferase family protein compare
PP_3603 -3.8 -7.3 Transcriptional regulator, GntR family compare
PP_3946 -3.8 -1.2 HTH-type transcriptional repressor NicR compare
PP_1986 -3.8 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_3736 -3.8 -11.4 vanillate O-demethylase oxygenase subunit compare
PP_0125 -3.8 -3.4 putative cytochrome c-type protein compare
PP_1367 -3.8 -7.4 formyltetrahydrofolate hydrolase compare
PP_0082 -3.8 -7.0 tryptophan synthase alpha chain compare
PP_1232 -3.7 -9.8 conserved exported protein of unknown function compare
PP_1377 -3.7 -8.4 beta-ketoadipyl-CoA thiolase compare
PP_0683 -3.6 -2.8 conserved protein of unknown function compare
PP_0421 -3.6 -7.3 Anthranilate phosphoribosyltransferase compare
PP_0290 -3.6 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -3.6 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0962 -3.6 -3.5 toluene-tolerance protein compare
PP_1375 -3.5 -12.2 transcription regulatory protein (pca regulon) compare
PP_1379 -3.5 -6.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_1088 -3.5 -10.8 Argininosuccinate synthase compare
PP_0083 -3.5 -7.3 tryptophan synthase beta chain compare
PP_0888 -3.5 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_3737 -3.5 -8.6 vanillate O-demethylase oxidoreductase compare
PP_5185 -3.5 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1826 -3.5 -3.0 Hydrolase, isochorismatase family compare
PP_2327 -3.5 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0735 -3.4 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_0420 -3.4 -9.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -3.4 -12.3 Ketol-acid reductoisomerase compare
PP_4890 -3.4 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_3952 -3.4 -7.5 3-oxoadipate CoA-transferase subunit A compare
PP_0289 -3.3 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1215 -3.3 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4696 -3.3 -5.6 Nitrogen regulation protein NR(I) compare
PP_4909 -3.3 -6.8 phosphoserine phosphatase compare
PP_0356 -3.3 -7.7 malate synthase G compare
PP_4695 -3.3 -11.6 Sensory box histidine kinase compare
PP_2402 -3.3 -1.9 putative Sensor histidine kinase compare
PP_5076 -3.3 -15.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_4656 -3.2 -6.7 protocatechuate 3,4-dioxygenase beta chain compare
PP_4680 -3.2 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1426 -3.2 -11.7 L-aspartate oxidase compare
PP_5104 -3.2 -6.8 thiazole synthase compare
PP_5075 -3.2 -11.2 glutamate synthase (NADPH) beta subunit compare
PP_2145 -3.2 -2.0 beta-N-acetylglucosaminidase compare
PP_1553 -3.2 -2.5 conserved protein of unknown function compare
PP_0417 -3.2 -15.1 Anthranilate synthase component 1 compare
PP_2324 -3.2 -5.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5015 -3.1 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4655 -3.1 -8.0 protocatechuate 3,4-dioxygenase alpha chain compare
PP_2356 -3.1 -9.5 putative Phytochrome family protein compare
PP_2001 -3.1 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_5146 -3.1 -9.0 RNA pyrophosphohydrolase compare
PP_5533 -3.1 -1.3 conserved protein of unknown function compare
PP_1233 -3.1 -4.6 sulfurtransferase compare
PP_1079 -3.1 -5.6 Ornithine carbamoyltransferase compare
PP_0965 -3.1 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4519 -3.1 -12.2 Agglutination protein compare
PP_4902 -3.0 -2.5 Oligoribonuclease compare
PP_0292 -3.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5098 -3.0 -6.7 methionine biosynthesis protein MetW compare
PP_2328 -3.0 -6.3 Phosphoadenosine phosphosulfate reductase compare
PP_4993 -3.0 -5.7 Glutathione synthetase compare
PP_0960 -3.0 -5.2 phospholipid ABC transporter binding protein compare
PP_4782 -2.9 -4.5 Phosphomethylpyrimidine kinase compare
PP_2806 -2.9 -5.6 Transcriptional regulator, TetR family compare
PP_2354 -2.9 -9.1 Sensory box histidine kinase/response regulator compare
PP_0905 -2.9 -1.5 conserved exported protein of unknown function compare
PP_3999 -2.9 -7.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1231 -2.9 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2581 -2.9 -1.1 conserved protein of unknown function compare
PP_0612 -2.9 -9.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_4793 -2.9 -1.7 conserved protein of unknown function compare
PP_0958 -2.9 -6.9 phospholipid ABC transporter ATP-binding subunit compare
PP_0593 -2.9 -0.9 putative ribosome-binding factor compare
PP_4679 -2.9 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0787 -2.8 -3.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1381 -2.8 -1.0 4-carboxymuconolactone decarboxylase compare
PP_3105 -2.8 -2.2 conserved membrane protein of unknown function compare
PP_5155 -2.8 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2320 -2.8 -9.1 conserved exported protein of unknown function compare
PP_4699 -2.8 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1616 -2.8 -8.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_3590 -2.8 -6.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1096 -2.8 -1.9 putative electron transport complex protein compare
PP_1217 -2.7 -5.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5303 -2.7 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0345 -2.7 -3.5 putative Heptose kinase WapP compare
PP_2720 -2.7 -1.2 conserved protein of unknown function compare
PP_4828 -2.7 -1.1 Precorrin-8X methylmutase compare
PP_2309 -2.7 -1.2 conserved protein of unknown function compare
PP_4340 -2.7 -3.2 response regulator for chemotactic signal transduction compare
PP_5026 -2.7 -8.6 Glucans biosynthesis protein G compare
PP_4532 -2.7 -2.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1380 -2.7 -4.7 3-oxoadipate enol-lactonase 2 compare
PP_0122 -2.7 -2.4 conserved exported protein of unknown function compare
PP_0961 -2.7 -8.2 toluene tolerance protein compare
PP_4004 -2.7 -4.3 DNA translocase FtsK compare
PP_2137 -2.6 -2.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_1719 -2.6 -9.3 Tail-specific protease prc compare
PP_0846 -2.6 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_4120 -2.6 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_1589 -2.6 -9.1 uridylyltransferase compare
PP_5084 -2.6 -10.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5230 -2.6 -3.4 Tyrosine recombinase XerC compare
PP_1384 -2.5 -8.4 Probable efflux pump outer membrane protein TtgC compare
PP_4124 -2.5 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_4504 -2.5 -1.3 conserved exported protein of unknown function compare
PP_4785 -2.5 -3.9 conserved exported protein of unknown function compare
PP_5025 -2.5 -7.9 Glucans biosynthesis glucosyltransferase H compare
PP_0165 -2.5 -11.9 GGDEF domain protein compare
PP_1151 -2.5 -4.2 conserved protein of unknown function compare
PP_4131 -2.5 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_1348 -2.5 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4342 -2.5 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_4922 -2.4 -8.6 Phosphomethylpyrimidine synthase compare
PP_4122 -2.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4098 -2.4 -1.5 UvrABC system protein C compare
PP_4874 -2.4 -1.0 50S ribosomal protein L9 compare
PP_1268 -2.4 -2.2 putative HtrA suppressor protein sohA compare
PP_2302 -2.4 -5.7 DNA-binding, ATP-dependent protease compare
PP_0834 -2.4 -1.7 Sec translocation complex subunit YajC compare
PP_5014 -2.4 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0959 -2.4 -2.1 phospholipid ABC transporter compare
PP_4121 -2.4 -1.6 NADH-quinone oxidoreductase subunit C/D compare
PP_0938 -2.4 -10.5 conserved protein of unknown function compare
PP_4944 -2.4 -3.4 Carbamoyltransferase compare
PP_4824 -2.4 -7.4 Sensor histidine kinase/response regulator compare
PP_1385 -2.3 -10.7 Probable efflux pump membrane transporter TtgB compare
PP_4260 -2.3 -5.1 conserved protein of unknown function compare
PP_0413 -2.3 -9.0 Polyamine ABC transporter, permease protein compare
PP_0166 -2.3 -9.9 HlyD family secretion protein compare
PP_4997 -2.3 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5128 -2.3 -5.0 Dihydroxy-acid dehydratase compare
PP_3346 -2.3 -2.1 Nickel transporter ATP-binding protein compare
PP_3649 -2.2 -3.7 Transcriptional regulator, GntR family compare
PP_1697 -2.2 -2.3 transcriptional regulator, GntR family compare
PP_5350 -2.2 -3.5 Transcriptional regulator, RpiR family compare
PP_1938 -2.2 -1.7 conserved protein of unknown function compare
PP_0167 -2.2 -11.4 Toxin secretion ATP-binding protein compare
PP_0127 -2.2 -2.7 Thiol:disulfide interchange protein compare
PP_1021 -2.1 -3.9 DNA-binding transcriptional regulator compare
PP_4923 -2.1 -7.8 Outer membrane efflux protein compare
PP_3286 -2.1 -4.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4480 -2.1 -7.0 arginine N-succinyltransferase, subunit alpha compare
PP_1325 -2.1 -5.3 putative lipoprotein compare
PP_0368 -2.1 -9.0 putative Acyl-CoA dehydrogenase compare
PP_0725 -2.1 -4.7 conserved hypothetical TPR repeat protein compare
PP_3902 -2.1 -1.6 conserved protein of unknown function compare
PP_5311 -2.0 -6.2 putative signal transduction protein compare
PP_5227 -2.0 -6.5 diaminopimelate decarboxylase compare
PP_5659 -2.0 -2.9 protein of unknown function compare
PP_0596 -2.0 -6.8 Omega-amino acid--pyruvate aminotransferase compare
PP_0903 -2.0 -2.7 conserved protein of unknown function compare
PP_4263 -2.0 -2.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4126 -2.0 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_5248 -2.0 -1.2 putative hydrolase compare
PP_3484 -2.0 -4.1 Response regulator receiver protein compare
PP_5430 -1.9 -3.0 protein of unknown function compare
PP_3637 -1.9 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0293 -1.9 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4008 -1.9 -5.2 ATP-dependent serine protease compare
PP_4804 -1.9 -2.8 RlpA-like lipoprotein compare
PP_0820 -1.9 -3.0 GCN5-related N-acetyltransferase compare
PP_0152 -1.9 -1.3 conserved exported protein of unknown function compare
PP_2633 -1.9 -1.2 conserved protein of unknown function compare
PP_0138 -1.9 -6.1 conserved membrane protein of unknown function compare
PP_3971 -1.9 -1.2 conserved protein of unknown function compare
PP_1493 -1.9 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare


Specific Phenotypes

For 31 genes in this experiment

For carbon source Sodium ferulate in Pseudomonas putida KT2440

For carbon source Sodium ferulate across organisms