Experiment set22IT001 for Pseudomonas putida KT2440

Compare to:

Sodium ferulate carbon source; with MOPS

Genes with specific phenotypes:

  gene name fitness t score description  
PP_1380 -5.4 -6.4 3-oxoadipate enol-lactonase 2 compare
PP_1150 -4.9 -10.0 putative Membrane protein compare
PP_3356 -4.5 -15.4 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_1379 -4.5 -7.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4656 -4.3 -7.3 protocatechuate 3,4-dioxygenase beta chain compare
PP_3736 -4.2 -11.2 vanillate O-demethylase oxygenase subunit compare
PP_1377 -3.9 -6.0 beta-ketoadipyl-CoA thiolase compare
PP_3737 -3.9 -10.8 vanillate O-demethylase oxidoreductase compare
PP_1375 -3.8 -13.6 transcription regulatory protein (pca regulon) compare
PP_1151 -3.8 -5.3 conserved protein of unknown function compare
PP_3952 -3.7 -9.6 3-oxoadipate CoA-transferase subunit A compare
PP_3358 -3.4 -8.3 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1152 -3.3 -7.7 putative membrane fusion efflux protein compare
PP_5026 -3.2 -8.5 Glucans biosynthesis protein G compare
PP_4655 -3.2 -9.4 protocatechuate 3,4-dioxygenase alpha chain compare
PP_1367 -3.0 -6.3 formyltetrahydrofolate hydrolase compare
PP_1616 -2.8 -10.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_0612 -2.6 -8.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_2806 -2.6 -5.1 Transcriptional regulator, TetR family compare
PP_0596 -2.5 -7.9 Omega-amino acid--pyruvate aminotransferase compare
PP_0904 -2.4 -7.7 InaA protein compare
PP_5236 -2.2 -7.0 conserved protein of unknown function compare
PP_5025 -2.1 -6.1 Glucans biosynthesis glucosyltransferase H compare
PP_4860 -2.0 -8.4 putative Mannose-6-phosphate isomerase compare
PP_4923 -2.0 -6.3 Outer membrane efflux protein compare
PP_0413 -1.9 -8.9 Polyamine ABC transporter, permease protein compare
PP_1378 -1.6 -5.7 alpha-ketoglutarate permease compare
PP_4570 -1.6 -6.8 conserved protein of unknown function compare
PP_1058 -1.4 -7.1 conserved protein of unknown function compare
PP_1689 -1.3 -6.4 putative Long-chain fatty acid transporter compare
PP_1838 -1.2 -6.7 conserved membrane protein of unknown function compare
PP_2019 -1.1 -5.1 adhesin-associated MmpL efflux pump (from data) compare
PP_4398 +1.6 10.8 Major facilitator family transporter compare


Specific phenotypes for carbon source Sodium ferulate across organisms