Experiment set22IT001 for Pseudomonas putida KT2440

Compare to:

Sodium ferulate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1079 -5.9 -5.8 Ornithine carbamoyltransferase compare
PP_0293 -5.8 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1380 -5.4 -6.4 3-oxoadipate enol-lactonase 2 compare
PP_1986 -5.3 -2.5 3-isopropylmalate dehydratase small subunit compare
PP_0961 -5.2 -5.1 toluene tolerance protein compare
PP_5185 -5.1 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1381 -5.0 -1.1 4-carboxymuconolactone decarboxylase compare
PP_1150 -4.9 -10.0 putative Membrane protein compare
PP_0184 -4.9 -4.7 Argininosuccinate lyase compare
PP_1231 -4.7 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -4.7 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5104 -4.7 -9.4 thiazole synthase compare
PP_1995 -4.7 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3356 -4.5 -15.4 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_0082 -4.5 -6.2 tryptophan synthase alpha chain compare
PP_4890 -4.5 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1379 -4.5 -7.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_0960 -4.5 -6.1 phospholipid ABC transporter binding protein compare
PP_2416 -4.5 -2.3 putative Iron ABC transporter, ATP-binding protein compare
PP_1088 -4.4 -10.3 Argininosuccinate synthase compare
PP_2168 -4.4 -11.7 Transaldolase compare
PP_2137 -4.4 -3.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_2371 -4.4 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2327 -4.4 -5.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2163 -4.4 -7.8 VacJ lipoprotein compare
PP_0377 -4.3 -1.4 coenzyme PQQ synthesis protein D compare
PP_5114 -4.3 -2.8 putative adenine methyltransferase compare
PP_0417 -4.3 -18.3 Anthranilate synthase component 1 compare
PP_4656 -4.3 -7.3 protocatechuate 3,4-dioxygenase beta chain compare
PP_1985 -4.3 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_0966 -4.2 -11.9 Histidinol dehydrogenase compare
PP_0735 -4.2 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_1713 -4.2 -1.3 Transcriptional regulator PcaQ compare
PP_3736 -4.2 -11.2 vanillate O-demethylase oxygenase subunit compare
PP_1048 -4.2 -2.4 putative protein secretion protein for export compare
PP_0787 -4.2 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0290 -4.1 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3511 -4.1 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_4837 -4.1 -3.4 conserved protein of unknown function compare
PP_0547 -4.1 -7.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5155 -4.0 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5128 -4.0 -9.5 Dihydroxy-acid dehydratase compare
PP_0967 -4.0 -11.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -4.0 -4.9 Indole-3-glycerol phosphate synthase compare
PP_5097 -4.0 -13.4 homoserine O-acetyltransferase compare
PP_5075 -4.0 -13.9 glutamate synthase (NADPH) beta subunit compare
PP_1233 -4.0 -5.6 sulfurtransferase compare
PP_1988 -4.0 -9.5 3-isopropylmalate dehydrogenase compare
PP_5098 -3.9 -8.1 methionine biosynthesis protein MetW compare
PP_4699 -3.9 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0420 -3.9 -11.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1377 -3.9 -6.0 beta-ketoadipyl-CoA thiolase compare
PP_2001 -3.9 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_1025 -3.9 -13.9 2-isopropylmalate synthase compare
PP_3737 -3.9 -10.8 vanillate O-demethylase oxidoreductase compare
PP_2337 -3.8 -2.4 aconitate isomerase compare
PP_5583 -3.8 -1.6 conserved protein of unknown function compare
PP_2356 -3.8 -13.4 putative Phytochrome family protein compare
PP_1375 -3.8 -13.6 transcription regulatory protein (pca regulon) compare
PP_5232 -3.8 -1.6 conserved protein of unknown function compare
PP_1826 -3.8 -2.5 Hydrolase, isochorismatase family compare
PP_1151 -3.8 -5.3 conserved protein of unknown function compare
PP_4937 -3.7 -5.7 toluene tolerance protein compare
PP_3952 -3.7 -9.6 3-oxoadipate CoA-transferase subunit A compare
PP_4678 -3.7 -14.7 Ketol-acid reductoisomerase compare
PP_4679 -3.6 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3951 -3.6 -3.9 3-oxoadipate CoA-transferase subunit A compare
PP_3245 -3.6 -1.6 conserved protein of unknown function compare
PP_4680 -3.5 -13.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4262 -3.5 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5146 -3.5 -9.5 RNA pyrophosphohydrolase compare
PP_4726 -3.5 -2.6 Chaperone protein DnaJ compare
PP_5076 -3.5 -17.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0083 -3.5 -7.4 tryptophan synthase beta chain compare
PP_3358 -3.4 -8.3 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1654 -3.4 -2.4 cysteine synthase B compare
PP_4993 -3.4 -5.2 Glutathione synthetase compare
PP_1384 -3.4 -6.5 Probable efflux pump outer membrane protein TtgC compare
PP_0291 -3.4 -4.4 conserved protein of unknown function compare
PP_0421 -3.4 -6.3 Anthranilate phosphoribosyltransferase compare
PP_4804 -3.3 -2.3 RlpA-like lipoprotein compare
PP_2302 -3.3 -4.5 DNA-binding, ATP-dependent protease compare
PP_4782 -3.3 -4.7 Phosphomethylpyrimidine kinase compare
PP_1215 -3.3 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1152 -3.3 -7.7 putative membrane fusion efflux protein compare
PP_5313 -3.2 -2.5 DNA-binding protein HU-alpha compare
PP_0846 -3.2 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_1198 -3.2 -3.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1385 -3.2 -13.9 Probable efflux pump membrane transporter TtgB compare
PP_5026 -3.2 -8.5 Glucans biosynthesis protein G compare
PP_0356 -3.2 -7.5 malate synthase G compare
PP_4519 -3.2 -13.0 Agglutination protein compare
PP_4655 -3.2 -9.4 protocatechuate 3,4-dioxygenase alpha chain compare
PP_2322 -3.2 -5.4 Major outer membrane lipoprotein compare
PP_5014 -3.2 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_2403 -3.1 -1.4 Chemotaxis protein CheY compare
PP_2370 -3.1 -2.8 conserved protein of unknown function compare
PP_4695 -3.1 -12.2 Sensory box histidine kinase compare
PP_3484 -3.1 -6.8 Response regulator receiver protein compare
PP_2354 -3.1 -7.9 Sensory box histidine kinase/response regulator compare
PP_1232 -3.1 -8.0 conserved exported protein of unknown function compare
PP_4944 -3.1 -2.1 Carbamoyltransferase compare
PP_4696 -3.1 -4.7 Nitrogen regulation protein NR(I) compare
PP_0138 -3.1 -7.4 conserved membrane protein of unknown function compare
PP_0346 -3.1 -8.7 putative Heptose kinase WapQ compare
PP_3307 -3.0 -1.5 conserved protein of unknown function compare
PP_2147 -3.0 -3.3 conserved exported protein of unknown function compare
PP_3999 -3.0 -6.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1367 -3.0 -6.3 formyltetrahydrofolate hydrolase compare
PP_4909 -3.0 -6.9 phosphoserine phosphatase compare
PP_5453 -3.0 -1.9 conserved protein of unknown function compare
PP_2320 -3.0 -9.6 conserved exported protein of unknown function compare
PP_3357 -2.9 -3.4 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_5084 -2.9 -10.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1528 -2.9 -1.2 conserved protein of unknown function compare
PP_0127 -2.9 -4.2 Thiol:disulfide interchange protein compare
PP_4342 -2.9 -3.5 flagellar synthesis regulator, putative ATPase compare
PP_0289 -2.9 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4785 -2.9 -3.9 conserved exported protein of unknown function compare
PP_0516 -2.9 -3.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_2136 -2.9 -4.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3833 -2.9 -3.4 Response regulator compare
PP_5289 -2.9 -3.7 Acetylglutamate kinase compare
PP_4994 -2.9 -3.7 conserved protein of unknown function compare
PP_1941 -2.9 -5.5 conserved protein of unknown function compare
PP_0962 -2.8 -2.7 toluene-tolerance protein compare
PP_0725 -2.8 -6.5 conserved hypothetical TPR repeat protein compare
PP_3649 -2.8 -4.6 Transcriptional regulator, GntR family compare
PP_0406 -2.8 -2.8 Nucleotidyltransferase family protein compare
PP_1616 -2.8 -10.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_1110 -2.8 -2.5 serine acetyltransferase compare
PP_5015 -2.8 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1589 -2.8 -9.0 uridylyltransferase compare
PP_4058 -2.7 -9.7 1,4-alpha-glucan branching enzyme compare
PP_0938 -2.7 -12.2 conserved protein of unknown function compare
PP_0593 -2.7 -0.8 putative ribosome-binding factor compare
PP_3392 -2.7 -1.4 conserved protein of unknown function compare
PP_2328 -2.7 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_0789 -2.7 -4.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0958 -2.7 -6.0 phospholipid ABC transporter ATP-binding subunit compare
PP_3902 -2.7 -2.5 conserved protein of unknown function compare
PP_3198 -2.7 -2.0 Ferredoxin, 2Fe-2S compare
PP_4480 -2.6 -9.3 arginine N-succinyltransferase, subunit alpha compare
PP_3926 -2.6 -1.1 short-chain dehydrogenase compare
PP_0292 -2.6 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3880 -2.6 -1.3 conserved exported protein of unknown function compare
PP_1994 -2.6 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_2324 -2.6 -5.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0165 -2.6 -14.1 GGDEF domain protein compare
PP_0612 -2.6 -8.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_0345 -2.6 -3.3 putative Heptose kinase WapP compare
PP_4504 -2.6 -1.4 conserved exported protein of unknown function compare
PP_4273 -2.6 -1.1 Transcriptional regulator, MerR family compare
PP_1426 -2.6 -10.2 L-aspartate oxidase compare
PP_5058 -2.6 -6.4 Carboxy-terminal-processing protease compare
PP_2806 -2.6 -5.1 Transcriptional regulator, TetR family compare
PP_5303 -2.5 -4.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5028 -2.5 -2.4 proline iminopeptidase compare
PP_0596 -2.5 -7.9 Omega-amino acid--pyruvate aminotransferase compare
PP_4922 -2.5 -8.8 Phosphomethylpyrimidine synthase compare
PP_4124 -2.5 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_0368 -2.5 -9.7 putative Acyl-CoA dehydrogenase compare
PP_3447 -2.5 -0.9 conserved membrane protein of unknown function compare
PP_4131 -2.5 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_4126 -2.5 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_4424 -2.4 -2.0 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1237 -2.4 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4122 -2.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4120 -2.4 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_0167 -2.4 -13.3 Toxin secretion ATP-binding protein compare
PP_5533 -2.4 -1.2 conserved protein of unknown function compare
PP_0904 -2.4 -7.7 InaA protein compare
PP_5267 -2.4 -2.0 putative cytochrome c5 compare
PP_5473 -2.3 -1.4 putative transcriptional regulator, LuxR family compare
PP_4964 -2.3 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5093 -2.3 -1.0 twitching motility protein compare
PP_3603 -2.3 -5.4 Transcriptional regulator, GntR family compare
PP_3474 -2.3 -4.1 putative Curli fiber protein CsgE compare
PP_5652 -2.3 -1.5 conserved protein of unknown function, phage origin compare
PP_5328 -2.3 -1.5 putative phosphate transport system permease protein compare
PP_1325 -2.3 -8.1 putative lipoprotein compare
PP_3590 -2.3 -6.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3286 -2.3 -3.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1386 -2.3 -6.8 Probable efflux pump periplasmic linker TtgA compare
PP_4364 -2.3 -2.7 putative Anti-sigma F factor antagonist compare
PP_0995 -2.3 -5.8 conserved membrane protein of unknown function compare
PP_4902 -2.2 -2.3 Oligoribonuclease compare
PP_5227 -2.2 -9.2 diaminopimelate decarboxylase compare
PP_4340 -2.2 -3.4 response regulator for chemotactic signal transduction compare
PP_5236 -2.2 -7.0 conserved protein of unknown function compare
PP_4098 -2.2 -1.8 UvrABC system protein C compare
PP_0168 -2.2 -12.6 putative surface adhesion protein compare
PP_4301 -2.2 -2.4 Pyruvate kinase compare
PP_5706 -2.1 -2.1 Sec translocation complex - SecG subunit compare
PP_4004 -2.1 -3.6 DNA translocase FtsK compare
PP_5025 -2.1 -6.1 Glucans biosynthesis glucosyltransferase H compare
PP_5035 -2.1 -5.7 Histidine utilization repressor compare
PP_5294 -2.1 -5.1 Ribonuclease PH compare
PP_2306 -2.1 -1.4 conserved exported protein of unknown function compare
PP_1214 -2.1 -2.3 putative transcriptional regulatory protein compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source Sodium ferulate in Pseudomonas putida KT2440

For carbon source Sodium ferulate across organisms