Experiment set22IT001 for Pseudomonas putida KT2440

Compare to:

Sodium ferulate carbon source; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PP_5053 +5.6 12.4 Protein-export protein SecB compare
PP_1623 +4.4 19.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_4940 +2.9 17.4 Putative glycosyltransferase compare
PP_1778 +2.8 10.3 Lipopolysaccharide ABC export system, permease protein compare
PP_5054 +2.5 1.5 glutaredoxin 3 compare
PP_1779 +2.5 11.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1799 +2.3 12.9 GDP-mannose 4,6-dehydratase compare
PP_4171 +2.2 8.4 conserved exported protein of unknown function compare
PP_4936 +2.1 9.8 O-antigen polymerase compare
PP_1805 +2.1 14.6 Polysaccharide biosynthesis protein compare
PP_1783 +2.0 3.1 dTDP-glucose pyrophosphorylase compare
PP_1113 +2.0 9.6 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0276 +2.0 2.3 Transcriptional regulator, Cro/CI family compare
PP_1322 +2.0 1.9 putative Lipoprotein compare
PP_1776 +1.9 11.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4515 +1.9 6.4 Transcriptional regulator, MarR family compare
PP_1780 +1.9 14.2 putative mannosyltransferase compare
PP_1803 +1.8 10.2 UDP-sugar epimerase compare
PP_2889 +1.8 4.4 putative Transmembrane regulator PrtR compare
PP_4938 +1.7 7.8 putative Glycosyl transferase compare
PP_1801 +1.7 7.0 Glycosyl transferase WbpY compare
PP_1777 +1.7 9.7 phosphomannomutase compare
PP_4398 +1.6 10.8 Major facilitator family transporter compare
PP_2029 +1.6 2.7 von Willebrand factor type A domain protein compare
PP_0065 +1.6 3.7 NAD-binding component of TrK potassium transporter compare
PP_0948 +1.6 2.4 Phosphocarrier protein HPr compare
PP_1804 +1.6 6.0 Glycosyl transferase WbpL compare
PP_3551 +1.5 1.9 DNA-binding response regulator, LuxR family compare
PP_2144 +1.5 2.7 Transcriptional regulator, TetR family compare
PP_0232 +1.5 1.9 ATP-binding taurine transporter subunit compare
PP_2387 +1.5 2.3 conserved protein of unknown function compare
PP_4271 +1.5 1.5 conserved protein of unknown function compare
PP_1802 +1.5 9.7 glycosyl transferase compare
PP_4196 +1.5 2.1 conserved exported protein of unknown function compare
PP_4943 +1.4 2.9 putative Glycosyl transferase compare
PP_1800 +1.4 6.6 Oxidoreductase Rmd compare
PP_4952 +1.4 1.6 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3359 +1.4 0.8 putative Hydroxycinnamic acid degradation regulator compare
PP_5322 +1.4 5.9 putative metal ion transporter compare
PP_1683 +1.4 2.2 Transcriptional regulator, MarR family compare
PP_4999 +1.3 0.5 dihydroorotase-like protein compare
PP_4799 +1.3 0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5191 +1.3 1.9 conserved exported protein of unknown function compare
PP_4789 +1.3 4.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5223 +1.3 3.5 regulator of nucleotide diphosphokinase compare
PP_0319 +1.3 1.7 conserved protein of unknown function compare
PP_1775 +1.3 4.4 Metallo-beta-lactamase family protein compare
PP_4981 +1.2 1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_5705 +1.2 0.9 protein of unknown function compare
PP_4100 +1.2 3.7 Transcriptional regulator, Cro/CI family compare
PP_2794 +1.2 2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0274 +1.2 1.4 putative transcriptional regulator containing HTH domain compare
PP_2972 +1.2 1.2 conserved protein of unknown function compare
PP_1216 +1.2 1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5456 +1.2 1.1 conserved protein of unknown function compare
PP_1036 +1.2 5.8 membrane-bound lytic murein transglycosylase F compare
PP_1664 +1.2 2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_0574 +1.2 6.2 DNA-binding response regulator, LuxR family compare
PP_3052 +1.2 1.3 conserved protein of unknown function compare
PP_4361 +1.2 4.3 Flagellar hook-length control protein FliK compare
PP_4939 +1.2 3.3 conserved protein of unknown function compare
PP_1038 +1.1 2.0 conserved protein of unknown function compare
PP_3906 +1.1 2.1 conserved protein of unknown function compare
PP_5110 +1.1 0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1309 +1.1 5.2 conserved exported protein of unknown function compare
PP_0355 +1.1 2.8 Response regulator compare
PP_1344 +1.1 0.6 conserved protein of unknown function compare
PP_1909 +1.1 2.6 putative septum formation protein compare
PP_3627 +1.1 2.5 conserved protein of unknown function compare
PP_4707 +1.1 2.2 OsmY-related protein compare
PP_2923 +1.1 2.1 conserved protein of unknown function compare
PP_2389 +1.0 3.5 conserved protein of unknown function compare
PP_0512 +1.0 2.3 hypothetical protein compare
PP_0784 +1.0 2.4 conserved protein of unknown function compare
PP_3840 +1.0 1.3 conserved protein of unknown function compare
PP_2568 +1.0 1.1 Ring-cleaving dioxygenase compare
PP_0189 +1.0 3.6 putative heme biosynthesis protein compare
PP_1140 +1.0 4.4 branched chain amino acid transporter - permease subunit compare
PP_2514 +1.0 2.4 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_1362 +1.0 2.6 pyruvate kinase II compare
PP_0048 +1.0 1.1 conserved protein of unknown function compare
PP_4483 +1.0 3.4 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_3002 +1.0 2.1 shikimate dehydrogenase-related enzyme compare
PP_4723 +1.0 0.7 Carbamoyl-phosphate synthase large chain compare
PP_1650 +1.0 3.8 Sensor protein GacS compare
PP_3831 +1.0 3.1 conserved protein of unknown function compare
PP_3541 +0.9 2.1 Transporter, MgtC family compare
PP_3963 +0.9 2.4 conserved protein of unknown function compare
PP_0628 +0.9 1.3 conserved protein of unknown function compare
PP_2342 +0.9 2.2 conserved protein of unknown function compare
PP_1998 +0.9 3.1 putative cell division protein compare
PP_1055 +0.9 1.0 Type II secretion pathway protein GspN compare
PP_2510 +0.9 0.8 conserved protein of unknown function compare
PP_5279 +0.9 1.4 conserved protein of unknown function compare
PP_4470 +0.9 1.6 putative transcriptional regulator (Arc domain-containing) compare
PP_4681 +0.9 0.7 conserved protein of unknown function compare
PP_1004 +0.9 1.5 conserved protein of unknown function compare
PP_0839 +0.9 2.1 tRNA Cm32/Um32 methyltransferase compare
PP_0092 +0.9 1.4 putative lipoprotein compare
PP_1787 +0.9 2.0 conserved protein of unknown function compare
PP_1864 +0.9 1.0 conserved protein of unknown function compare
PP_0333 +0.9 2.4 conserved exported protein of unknown function compare
PP_0503 +0.9 2.7 Major facilitator family transporter compare
PP_1112 +0.9 3.1 conserved membrane protein of unknown function compare
PP_0279 +0.9 2.7 conserved protein of unknown function compare
PP_4749 +0.9 3.3 Amino acid ABC transporter, permease protein compare
PP_4905 +0.9 2.5 Flagellar motor rotation protein compare
PP_3185 +0.8 1.6 Pet18 protein compare
PP_3916 +0.8 1.2 conserved protein of unknown function compare
PP_2705 +0.8 1.4 conserved protein of unknown function compare
PP_1766 +0.8 1.6 methylthioribose-1-phosphate isomerase compare
PP_4151 +0.8 1.7 Excisionase domain protein compare
PP_4390 +0.8 3.3 flagellar basal-body rod protein FlgC compare
PP_2747 +0.8 0.7 conserved protein of unknown function compare
PP_1197 +0.8 4.2 ribosomal protein S12 methylthiotransferase compare
PP_5624 +0.8 2.7 conserved protein of unknown function compare
PP_3874 +0.8 1.0 conserved protein of unknown function compare
PP_4847 +0.8 0.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_5200 +0.8 3.1 proline aminopeptidase P II compare
PP_3866 +0.8 1.7 conserved protein of unknown function compare
PP_4760 +0.8 1.6 Alcohol dehydrogenase, zinc-containing compare
PP_3456 +0.8 4.0 Multidrug resistance protein MexB compare
PP_3083 +0.8 2.8 putative Membrane protein compare
PP_3380 +0.8 2.0 2-ketogluconate utilization repressor compare
PP_2898 +0.8 1.5 conserved exported protein of unknown function compare
PP_1559 +0.8 1.4 Holin compare
PP_5022 +0.8 0.8 Glutamine transport ATP-binding protein GlnQ compare
PP_1087 +0.8 3.1 Outer membrane protein, OmpA family compare
PP_3651 +0.8 4.8 Sensor histidine kinase/response regulator compare
PP_4897 +0.8 1.7 N-acetylmuramoyl-L-alanine amidase compare
PP_0587 +0.8 2.6 conserved exported protein of unknown function compare
PP_3304 +0.8 3.4 Multidrug resistance transporter, Bcr/CflA family compare
PP_4099 +0.8 3.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3469 +0.8 1.8 conserved protein of unknown function compare
PP_2028 +0.8 2.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1562 +0.8 0.5 putative Phage terminase, small subunit compare
PP_4910 +0.8 1.2 conserved protein of unknown function compare
PP_2520 +0.8 1.2 conserved protein of unknown function compare
PP_0035 +0.8 1.1 putative bactoprenol-linked glycose transferase compare
PP_0760 +0.8 1.0 conserved membrane protein of unknown function compare
PP_4569 +0.8 0.9 conserved protein of unknown function compare
PP_2290 +0.8 1.4 conserved protein of unknown function compare
PP_3971 +0.8 1.1 conserved protein of unknown function compare
PP_5589 +0.8 2.2 protein of unknown function containing Rhs repeat-associated core domain compare
PP_2550 +0.8 1.2 putative transcriptional regulatory protein compare
PP_3888 +0.8 2.1 conserved protein of unknown function compare
PP_4213 +0.8 1.3 putative dipeptidase compare
PP_2027 +0.8 2.6 conserved exported protein of unknown function compare
PP_4108 +0.8 1.9 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_3075 +0.8 1.2 putative transcriptional regulator compare
PP_4985 +0.8 2.2 16S rRNA m3U1498 methyltransferase compare
PP_2434 +0.8 2.6 conserved protein of unknown function compare
PP_0494 +0.7 2.9 selenocysteyl-tRNA-specific translation elongation factor compare
PP_4942 +0.7 1.1 conserved protein of unknown function compare
PP_3350 +0.7 2.8 conserved exported protein of unknown function compare
PP_1300 +0.7 1.6 putative amino acid ABC transporter - ATP-binding subunit compare
PP_1279 +0.7 2.6 Probable alginate O-acetylase AlgJ compare
PP_1699 +0.7 1.9 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_4629 +0.7 2.4 Sensory box protein compare
PP_1918 +0.7 3.8 septation protein compare
PP_2859 +0.7 2.5 conserved protein of unknown function compare
PP_3892 +0.7 0.8 conserved protein of unknown function compare
PP_3794 +0.7 3.2 periplasmic murein D-alanyl-D-alanine endopeptidase compare
PP_5594 +0.7 0.6 conserved protein of unknown function compare
PP_5485 +0.7 1.9 putative N-acetyltransferase, GNAT domain compare
PP_4961 +0.7 0.8 putative Lipoprotein compare
PP_1271 +0.7 2.0 putative Multidrug efflux MFS transporter compare
PP_3726 +0.7 0.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_5390 +0.7 2.2 conserved hypothetical protein compare
PP_1141 +0.7 2.6 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_5709 +0.7 2.5 protein of unknown function compare
PP_0440 +0.7 0.8 Elongation factor Tu-A compare
PP_4308 +0.7 1.2 Transcriptional regulator, AsnC family compare
PP_1310 +0.7 1.1 conserved hypothetical protein compare
PP_2718 +0.7 1.1 arsenic resistance transcriptional regulator compare
PP_4904 +0.7 2.9 Flagellar motor rotation protein compare
PP_3782 +0.7 2.3 conserved protein of unknown function compare
PP_4688 +0.7 2.1 Heme/hemin ABC transporter, permease protein compare
PP_2643 +0.7 2.0 aromatic acid chemoreceptor compare
PP_2668 +0.7 1.2 ABC efflux transporter, ATP-binding protein compare
PP_2751 +0.7 2.8 conserved exported protein of unknown function compare
PP_4136 +0.7 0.6 Transcriptional regulator, LuxR family compare
PP_3094 +0.7 1.9 conserved exported protein of unknown function compare
PP_4551 +0.7 1.5 Hydrolase, alpha/beta fold family compare
PP_2258 +0.7 3.2 Sensory box protein compare
PP_2689 +0.7 2.0 putative Endoribonuclease compare
PP_1439 +0.7 1.0 conserved exported protein of unknown function compare
PP_1560 +0.7 1.5 conserved protein of unknown function compare
PP_3564 +0.7 1.7 Transcriptional regulator, AraC family compare
PP_4365 +0.7 1.9 Flagellar protein FliJ compare
PP_5288 +0.7 2.5 Phosphomannomutase/phosphoglucomutase compare
PP_2140 +0.7 2.1 conserved protein of unknown function compare
PP_5580 +0.7 0.9 protein of unknown function compare
PP_1761 +0.7 3.6 diguanylate cyclase with phosphodiesterase domain compare
PP_4352 +0.7 3.4 flagellin export apparatus, substrate specificity protein compare
PP_5712 +0.7 1.4 conserved protein of unknown function compare
PP_5186 +0.7 2.5 acetylornithine deacetylase compare
PP_4418 +0.7 1.8 conserved protein of unknown function compare
PP_1824 +0.7 0.5 Smr domain protein compare
PP_2401 +0.7 1.8 conserved membrane protein of unknown function compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source Sodium ferulate in Pseudomonas putida KT2440

For carbon source Sodium ferulate across organisms