Experiment set21IT063 for Pseudomonas putida KT2440

Compare to:

no extra nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0566 -4.4 -1.6 translation-related factor compare
PP_0022 -4.1 -1.5 hypothetical protein compare
PP_2088 -3.7 -2.5 RNA polymerase sigma factor SigX compare
PP_3105 -3.3 -3.3 conserved membrane protein of unknown function compare
PP_1985 -3.3 -5.1 3-isopropylmalate dehydratase large subunit compare
PP_3505 -3.2 -2.7 conserved protein of unknown function compare
PP_0290 -3.1 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -3.1 -3.6 Indole-3-glycerol phosphate synthase compare
PP_2715 -3.0 -5.0 ArsH protein compare
PP_2681 -3.0 -2.2 coenzyme PQQ synthesis protein D compare
PP_1079 -3.0 -6.1 Ornithine carbamoyltransferase compare
PP_1381 -2.9 -1.5 4-carboxymuconolactone decarboxylase compare
PP_2140 -2.9 -4.3 conserved protein of unknown function compare
PP_0293 -2.7 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2327 -2.7 -5.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1988 -2.7 -5.5 3-isopropylmalate dehydrogenase compare
PP_2371 -2.6 -5.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3241 -2.6 -1.6 conserved exported protein of unknown function compare
PP_5047 -2.6 -4.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0082 -2.6 -4.8 tryptophan synthase alpha chain compare
PP_0846 -2.5 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_2520 -2.5 -3.8 conserved protein of unknown function compare
PP_4263 -2.5 -3.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5097 -2.5 -8.1 homoserine O-acetyltransferase compare
PP_4678 -2.5 -8.9 Ketol-acid reductoisomerase compare
PP_5155 -2.5 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0966 -2.4 -6.7 Histidinol dehydrogenase compare
PP_4890 -2.4 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5346 -2.4 -7.4 pyruvate carboxylase subunit B compare
PP_2402 -2.4 -1.6 putative Sensor histidine kinase compare
PP_2070 -2.4 -2.1 Transcriptional regulator, AraC family compare
PP_0967 -2.4 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4902 -2.4 -2.3 Oligoribonuclease compare
PP_5185 -2.4 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1322 -2.3 -1.6 putative Lipoprotein compare
PP_0421 -2.3 -7.1 Anthranilate phosphoribosyltransferase compare
PP_3999 -2.3 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4561 -2.2 -1.2 stress response protein compare
PP_3511 -2.2 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_5289 -2.2 -3.5 Acetylglutamate kinase compare
PP_0965 -2.2 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1041 -2.2 -1.9 twin arginine protein export complex subunit compare
PP_5583 -2.2 -2.0 conserved protein of unknown function compare
PP_5075 -2.1 -8.2 glutamate synthase (NADPH) beta subunit compare
PP_2044 -2.1 -1.8 conserved inner membrane protein of unknown function compare
PP_1589 -2.1 -7.7 uridylyltransferase compare
PP_5128 -2.1 -5.0 Dihydroxy-acid dehydratase compare
PP_4253 -2.1 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_t29 -2.1 -2.4 tRNA-Ala compare
PP_0083 -2.1 -4.4 tryptophan synthase beta chain compare
PP_2999 -2.0 -1.5 Glyoxalase family protein compare
PP_1186 -2.0 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_4680 -2.0 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2328 -2.0 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_4829 -2.0 -2.9 putative precorrin-3B synthase compare
PP_1995 -2.0 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4830 -2.0 -3.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_3239 -2.0 -2.9 putative cointegrate resolution protein T Tn4652 compare
PP_3035 -1.9 -1.8 conserved protein of unknown function compare
PP_1025 -1.9 -7.8 2-isopropylmalate synthase compare
PP_2633 -1.9 -1.6 conserved protein of unknown function compare
PP_0289 -1.9 -4.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1654 -1.8 -2.1 cysteine synthase B compare
PP_5076 -1.8 -8.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_3398 -1.8 -1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0184 -1.8 -5.3 Argininosuccinate lyase compare
PP_1986 -1.8 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_t12 -1.8 -1.1 tRNA-Thr compare
PP_0420 -1.7 -5.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3376 -1.7 -4.5 putative phosphonate dehydrogenase compare
PP_0292 -1.7 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -1.7 -6.3 Argininosuccinate synthase compare
PP_0406 -1.7 -2.8 Nucleotidyltransferase family protein compare
PP_5098 -1.7 -4.2 methionine biosynthesis protein MetW compare
PP_1237 -1.7 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2001 -1.7 -5.2 O-succinylhomoserine sulfhydrylase compare
PP_0417 -1.7 -8.2 Anthranilate synthase component 1 compare
PP_0963 -1.7 -2.0 putative BolA family protein compare
PP_2309 -1.7 -1.3 conserved protein of unknown function compare
PP_5491 -1.7 -3.0 conserved protein of unknown function with SEC-C motif domain compare
PP_4696 -1.6 -3.6 Nitrogen regulation protein NR(I) compare
PP_2864 -1.6 -3.2 conserved protein of unknown function compare
PP_1294 -1.6 -3.8 molybdopterin synthase large subunit compare
PP_4964 -1.6 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2121 -1.6 -1.7 putative Lipoprotein compare
PP_2581 -1.6 -1.5 conserved protein of unknown function compare
PP_0164 -1.6 -4.0 conserved protein of unknown function compare
PP_1269 -1.6 -1.1 Universal stress protein family compare
PP_2168 -1.5 -5.6 Transaldolase compare
PP_5048 -1.5 -3.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3715 -1.5 -2.6 Muconate cycloisomerase 1 compare
PP_5045 -1.5 -3.1 tRNA sulfurtransferase compare
PP_5748 -1.5 -1.1 cytochrome c heme lyase subunit compare
PP_4909 -1.5 -4.7 phosphoserine phosphatase compare
PP_1632 -1.5 -1.5 conserved protein of unknown function compare
PP_5347 -1.5 -5.2 pyruvate carboxylase subunit A compare
PP_2370 -1.5 -2.4 conserved protein of unknown function compare
PP_5191 -1.4 -2.2 conserved exported protein of unknown function compare
PP_5640 -1.4 -2.5 conserved protein of unknown function compare
PP_1231 -1.4 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2972 -1.4 -1.5 conserved protein of unknown function compare
PP_1829 -1.4 -2.2 Hydrolase, alpha/beta fold family compare
PP_2307 -1.4 -2.2 conserved protein of unknown function compare
PP_1733 -1.4 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_5201 -1.4 -2.1 conserved protein of unknown function, UPF0149 family compare
PP_5350 -1.4 -2.4 Transcriptional regulator, RpiR family compare
PP_1605 -1.4 -2.0 Ribonuclease HII compare
PP_4480 -1.4 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_4937 -1.4 -2.7 toluene tolerance protein compare
PP_5014 -1.4 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_3821 -1.4 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2526 -1.3 -2.1 conserved membrane protein of unknown function compare
PP_0725 -1.3 -3.1 conserved hypothetical TPR repeat protein compare
PP_4679 -1.3 -3.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2459 -1.3 -2.4 ribose pyranase compare
PP_2847 -1.3 -1.1 Urease accessory protein UreJ compare
PP_0959 -1.3 -1.4 phospholipid ABC transporter compare
PP_0513 -1.2 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2693 -1.2 -2.0 putative Dipeptidase compare
PP_4925 -1.2 -2.4 conserved protein of unknown function compare
PP_4098 -1.2 -1.2 UvrABC system protein C compare
PP_2530 -1.2 -1.8 conserved protein of unknown function compare
PP_1571 -1.2 -1.9 conserved protein of unknown function compare
PP_0949 -1.2 -3.0 putative ATP-binding protein UPF0042 compare
PP_5639 -1.2 -4.5 conserved exported protein of unknown function compare
PP_0989 -1.1 -1.9 glycine cleavage system H protein 1 compare
PP_2773 -1.1 -1.1 conserved protein of unknown function compare
PP_3938 -1.1 -1.4 conserved protein of unknown function compare
PP_1826 -1.1 -1.5 Hydrolase, isochorismatase family compare
PP_4785 -1.1 -3.3 conserved exported protein of unknown function compare
PP_4447 -1.1 -3.3 conserved protein of unknown function compare
PP_4699 -1.1 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2970 -1.1 -1.6 conserved exported protein of unknown function compare
PP_5717 -1.1 -1.4 conserved protein of unknown function compare
PP_3455 -1.1 -3.0 Multidrug efflux RND membrane fusion protein compare
PP_3971 -1.0 -1.0 conserved protein of unknown function compare
PP_2375 -1.0 -5.1 cobalamin-dependent methionine synthase compare
PP_0364 -1.0 -3.3 pimeloyl-[acp] methyl ester esterase compare
PP_2016 -1.0 -2.6 conserved protein of unknown function compare
PP_1912 -1.0 -2.6 Phosphate acyltransferase compare
PP_4700 -1.0 -0.7 pantothenate synthetase compare
PP_4266 -1.0 -1.5 Adenine phosphoribosyltransferase compare
PP_2750 -1.0 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4977 -1.0 -3.8 5,10-methylenetetrahydrofolate reductase compare
PP_5028 -1.0 -2.0 proline iminopeptidase compare
PP_2203 -1.0 -1.5 conserved protein of unknown function compare
PP_3043 -1.0 -1.3 conserved protein of unknown function compare
PP_0509 -1.0 -2.2 conserved protein of unknown function compare
PP_3892 -1.0 -0.9 conserved protein of unknown function compare
PP_3277 -1.0 -1.7 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_1480 -1.0 -1.4 conserved protein of unknown function compare
PP_2908 -1.0 -1.7 DNA-binding transcriptional repressor compare
PP_4218 -1.0 -4.2 Lipase/esterase family protein compare
PP_1304 -1.0 -3.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1534 -0.9 -2.9 conserved protein of unknown function compare
PP_5348 -0.9 -3.5 Transcriptional regulator, LysR family compare
PP_4387 -0.9 -1.7 conserved exported protein of unknown function compare
PP_5558 -0.9 -1.8 putative transcriptional xre family of phage origin compare
PP_1575 -0.9 -1.3 conserved protein of unknown function compare
PP_4754 -0.9 -2.6 Transcriptional regulator, TetR family compare
PP_1293 -0.9 -1.1 molybdopterin synthase small subunit compare
PP_5SB -0.9 -1.8 5S ribosomal RNA compare
PP_2824 -0.9 -2.0 Transcriptional regulator, TetR family compare
PP_0960 -0.9 -2.5 phospholipid ABC transporter binding protein compare
PP_0910 -0.9 -3.0 conserved exported protein of unknown function compare
PP_2083 -0.9 -2.3 putative Lipase compare
PP_4826 -0.9 -2.4 Precorrin-3B C17-methyltransferase compare
PP_3649 -0.9 -1.7 Transcriptional regulator, GntR family compare
PP_0916 -0.9 -1.6 Amino acid transporter LysE compare
PP_5230 -0.9 -1.6 Tyrosine recombinase XerC compare
PP_2129 -0.9 -2.4 conserved protein of unknown function compare
PP_4832 -0.9 -2.0 Precorrin-6x reductase compare
PP_1629 -0.9 -2.8 Protein RecA compare
PP_2610 -0.9 -2.5 conserved protein of unknown function compare
PP_0313 -0.9 -0.8 putative electron transfer flavoprotein beta subunit compare
PP_3915 -0.9 -3.5 conserved protein of unknown function compare
PP_5561 -0.9 -2.0 conserved protein of unknown function compare
PP_2163 -0.8 -2.8 VacJ lipoprotein compare
PP_2390 -0.8 -3.0 Transcriptional regulator, LysR family compare
PP_1675 -0.8 -2.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3904 -0.8 -2.1 conserved protein of unknown function compare
PP_3507 -0.8 -4.2 Aerobic cobaltochelatase subunit CobN compare
PP_4771 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_3081 -0.8 -1.5 conserved protein of unknown function compare
PP_2378 -0.8 -1.4 Fe/S biogenesis protein NfuA compare
PP_0848 -0.8 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2181 -0.8 -1.7 Transcriptional regulator, Cro/CI family compare
PP_1022 -0.8 -2.6 glucose 6-phosphate-1-dehydrogenase compare
PP_0980 -0.8 -2.5 Probable cytosol aminopeptidase compare
PP_0150 -0.8 -1.1 conserved exported protein of unknown function compare
PP_4471 -0.8 -1.7 Magnesium transporter compare
PP_5160 -0.8 -2.9 conserved exported protein of unknown function compare
PP_0117 -0.8 -3.1 Zn(2+) ABC transporter - permease subunit compare
PP_0504 -0.8 -2.5 Outer membrane protein OprG compare
PP_2142 -0.8 -1.8 Cell division inhibitor SulA compare
PP_2092 -0.8 -3.2 Nitrate transporter conserved
PP_5217 -0.8 -3.6 Polyphosphate kinase compare
PP_1655 -0.8 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0362 -0.8 -4.2 Biotin synthase compare
PP_0607 -0.8 -0.7 putative Type IV pili biogenesis protein FimT compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms