Experiment set21IT062 for Pseudomonas putida KT2440

Compare to:

no extra nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.3 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -4.9 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -4.7 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_5047 -3.7 -5.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5652 -3.5 -2.4 conserved protein of unknown function, phage origin compare
PP_0082 -3.4 -6.5 tryptophan synthase alpha chain compare
PP_4829 -3.4 -3.5 putative precorrin-3B synthase compare
PP_1906 -3.3 -4.5 ribosomal large subunit pseudouridine synthase C compare
PP_0290 -3.3 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3511 -3.3 -5.5 Branched-chain-amino-acid aminotransferase compare
PP_5098 -3.2 -6.4 methionine biosynthesis protein MetW compare
PP_5393 -3.1 -1.5 putative metal-binding chaperone compare
PP_0184 -3.1 -6.2 Argininosuccinate lyase compare
PP_1589 -2.9 -9.3 uridylyltransferase compare
PP_5048 -2.9 -3.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0789 -2.9 -5.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1079 -2.8 -5.2 Ornithine carbamoyltransferase compare
PP_5185 -2.8 -4.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1912 -2.7 -4.2 Phosphate acyltransferase compare
PP_0846 -2.6 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_1988 -2.6 -5.3 3-isopropylmalate dehydrogenase compare
PP_2681 -2.6 -2.0 coenzyme PQQ synthesis protein D compare
PP_4680 -2.6 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -2.6 -3.0 Indole-3-glycerol phosphate synthase compare
PP_2402 -2.6 -1.8 putative Sensor histidine kinase compare
PP_5701 -2.6 -1.9 conserved protein of unknown function compare
PP_1025 -2.6 -8.0 2-isopropylmalate synthase compare
PP_5347 -2.6 -8.7 pyruvate carboxylase subunit A compare
PP_2371 -2.5 -4.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5058 -2.4 -5.6 Carboxy-terminal-processing protease compare
PP_5097 -2.4 -7.2 homoserine O-acetyltransferase compare
PP_1088 -2.4 -8.9 Argininosuccinate synthase compare
PP_4696 -2.4 -4.7 Nitrogen regulation protein NR(I) compare
PP_3417 -2.4 -3.6 D-gluconate transporter compare
PP_0966 -2.3 -5.5 Histidinol dehydrogenase compare
PP_2328 -2.3 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_5028 -2.2 -1.5 proline iminopeptidase compare
PP_0313 -2.2 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_4480 -2.2 -8.0 arginine N-succinyltransferase, subunit alpha compare
PP_5128 -2.2 -5.5 Dihydroxy-acid dehydratase compare
PP_5289 -2.1 -3.7 Acetylglutamate kinase compare
PP_1995 -2.1 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -2.1 -9.2 Anthranilate synthase component 1 compare
PP_0967 -2.1 -7.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5014 -2.1 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_5659 -2.0 -2.7 protein of unknown function compare
PP_4045 -2.0 -2.8 conserved protein of unknown function compare
PP_4679 -2.0 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3034 -2.0 -3.4 putative Regulator protein compare
PP_5075 -2.0 -6.2 glutamate synthase (NADPH) beta subunit compare
PP_4678 -1.9 -6.7 Ketol-acid reductoisomerase compare
PP_3190 -1.9 -3.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_2327 -1.9 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2794 -1.9 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4828 -1.9 -1.5 Precorrin-8X methylmutase compare
PP_0083 -1.9 -3.9 tryptophan synthase beta chain compare
PP_5015 -1.9 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1176 -1.9 -1.5 conserved protein of unknown function compare
PP_1237 -1.9 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2044 -1.9 -1.5 conserved inner membrane protein of unknown function compare
PP_0420 -1.9 -5.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2001 -1.8 -4.8 O-succinylhomoserine sulfhydrylase compare
PP_0048 -1.8 -1.2 conserved protein of unknown function compare
PP_5303 -1.8 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0025 -1.8 -1.2 hypothetical protein compare
PP_2370 -1.8 -2.3 conserved protein of unknown function compare
PP_0775 -1.8 -2.3 conserved protein of unknown function compare
PP_4909 -1.8 -5.2 phosphoserine phosphatase compare
PP_4874 -1.8 -1.2 50S ribosomal protein L9 compare
PP_3110 -1.8 -1.4 protein of unknown function compare
PP_5198 -1.8 -2.9 conserved protein of unknown function compare
PP_1142 -1.8 -1.0 conserved protein of unknown function compare
PP_0254 -1.7 -2.1 conserved protein of unknown function compare
PP_0421 -1.7 -4.8 Anthranilate phosphoribosyltransferase compare
PP_1562 -1.7 -1.9 putative Phage terminase, small subunit compare
PP_1097 -1.7 -1.1 Methionine--tRNA ligase compare
PP_0888 -1.7 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0965 -1.7 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5076 -1.6 -7.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_4977 -1.6 -5.1 5,10-methylenetetrahydrofolate reductase compare
PP_4785 -1.6 -4.3 conserved exported protein of unknown function compare
PP_1814 -1.6 -3.3 conserved protein of unknown function compare
PP_2414 -1.6 -1.6 conserved exported protein of unknown function compare
PP_1672 -1.6 -3.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5571 -1.6 -1.3 conserved protein of unknown function compare
PP_4320 -1.6 -3.5 cytochrome c-type biogenesis protein compare
PP_4268 -1.6 -1.3 nucleoid-associated broad specificity regulator compare
PP_5203 -1.5 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_5348 -1.5 -4.0 Transcriptional regulator, LysR family compare
PP_1304 -1.5 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0547 -1.5 -5.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0164 -1.5 -4.1 conserved protein of unknown function compare
PP_2878 -1.5 -1.7 conserved protein of unknown function compare
PP_3003 -1.5 -2.5 3-dehydroquinate dehydratase 3, type II compare
PP_3999 -1.5 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1366 -1.4 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_5654 -1.4 -1.6 putative phosphotriesterase compare
PP_2848 -1.4 -1.6 urease accessory protein compare
PP_0566 -1.4 -1.1 translation-related factor compare
PP_2375 -1.4 -5.9 cobalamin-dependent methionine synthase compare
PP_3376 -1.4 -2.5 putative phosphonate dehydrogenase compare
PP_5486 -1.4 -1.3 conserved protein of unknown function compare
PP_2243 -1.4 -4.0 conserved protein of unknown function compare
PP_2820 -1.4 -2.3 HTH-type transcriptional regulator nfxB compare
PP_1326 -1.4 -3.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5350 -1.4 -2.7 Transcriptional regulator, RpiR family compare
PP_3649 -1.4 -2.1 Transcriptional regulator, GntR family compare
PP_0065 -1.4 -2.2 NAD-binding component of TrK potassium transporter compare
PP_3876 -1.4 -2.3 conserved protein of unknown function compare
PP_1654 -1.4 -2.3 cysteine synthase B compare
PP_4593 -1.3 -1.2 conserved protein of unknown function compare
PP_0273 -1.3 -2.2 conserved protein of unknown function compare
PP_4707 -1.3 -2.1 OsmY-related protein compare
PP_5346 -1.3 -4.2 pyruvate carboxylase subunit B compare
PP_2280 -1.3 -1.6 conserved protein of unknown function compare
PP_3926 -1.3 -1.1 short-chain dehydrogenase compare
PP_4256 -1.3 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_2976 -1.3 -1.3 putative transposase compare
PP_4262 -1.3 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5639 -1.3 -4.2 conserved exported protein of unknown function compare
PP_4989 -1.3 -2.4 Protein PilJ compare
PP_3225 -1.3 -3.7 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_0999 -1.3 -1.9 carbamate kinase compare
PP_0292 -1.3 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1054 -1.3 -1.5 Type II secretion pathway protein XcpZ compare
PP_2504 -1.3 -1.5 putative tautomerase K2 compare
PP_0001 -1.3 -1.4 probable chromosome-partitioning protein compare
PP_5007 -1.2 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4199 -1.2 -0.9 putative Lipoprotein compare
PP_5495 -1.2 -1.5 protein of unknown function compare
PP_3821 -1.2 -4.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2616 -1.2 -2.2 conserved protein of unknown function compare
PP_1679 -1.2 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5201 -1.2 -2.1 conserved protein of unknown function, UPF0149 family compare
PP_4804 -1.2 -2.1 RlpA-like lipoprotein compare
PP_1512 -1.2 -1.6 conserved protein of unknown function compare
PP_5453 -1.2 -1.1 conserved protein of unknown function compare
PP_2747 -1.2 -1.2 conserved protein of unknown function compare
PP_4130 -1.2 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3035 -1.2 -1.7 conserved protein of unknown function compare
PP_2088 -1.2 -1.2 RNA polymerase sigma factor SigX compare
PP_4004 -1.2 -2.0 DNA translocase FtsK compare
PP_2680 -1.2 -2.8 aldehyde dehydrogenase compare
PP_0319 -1.2 -1.3 conserved protein of unknown function compare
PP_4913 -1.1 -2.5 conserved protein of unknown function compare
PP_5471 -1.1 -1.3 putative response regulator receiver protein compare
PP_5507 -1.1 -3.3 protein of unknown function compare
PP_2074 -1.1 -2.7 Transcriptional regulator, LysR family compare
PP_5095 -1.1 -0.7 pyrroline-5-carboxylate reductase compare
PP_1368 -1.1 -3.7 putative membrane protein containing a glycosyltransferase domain compare
PP_0362 -1.1 -5.2 Biotin synthase compare
PP_1322 -1.1 -1.4 putative Lipoprotein compare
PP_2756 -1.1 -1.4 conserved protein of unknown function compare
PP_1528 -1.1 -1.1 conserved protein of unknown function compare
PP_1787 -1.1 -1.5 conserved protein of unknown function compare
PP_3541 -1.1 -1.9 Transporter, MgtC family compare
PP_1994 -1.1 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_3806 -1.1 -1.8 Hydrolase, isochorismatase family compare
PP_3048 -1.1 -1.4 conserved protein of unknown function compare
PP_5610 -1.1 -1.4 protein of unknown function compare
PP_0819 -1.1 -3.8 conserved ferredoxin-like protein of unknown function compare
PP_3893 -1.1 -3.0 putative Phage DNA helicase compare
PP_5381 -1.1 -1.9 hypothetical protein compare
PP_4699 -1.1 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2540 -1.1 -2.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0173 -1.1 -3.7 putative transcriptional factor-related protein compare
PP_0291 -1.1 -1.4 conserved protein of unknown function compare
PP_1231 -1.1 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3374 -1.1 -1.5 conserved protein of unknown function compare
PP_2404 -1.1 -2.1 conserved exported protein of unknown function compare
PP_1026 -1.1 -2.4 Peptidase, M23/M37 family compare
PP_5483 -1.0 -1.4 conserved protein of unknown function compare
PP_4254 -1.0 -1.3 conserved protein of unknown function compare
PP_4340 -1.0 -1.6 response regulator for chemotactic signal transduction compare
PP_3102 -1.0 -1.9 conserved protein of unknown function compare
PP_4124 -1.0 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_5693 -1.0 -2.3 conserved protein of unknown function compare
PP_2140 -1.0 -2.6 conserved protein of unknown function compare
PP_2525 -1.0 -2.0 conserved protein of unknown function compare
PP_1824 -1.0 -1.1 Smr domain protein compare
PP_5505 -1.0 -1.9 conserved transmembrane protein of unknown function compare
PP_1664 -1.0 -1.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_2093 -1.0 -3.2 NasT conserved
PP_5542 -1.0 -3.8 protein of unknown function compare
PP_5225 -1.0 -0.9 frataxin compare
PP_2960 -1.0 -1.4 transcriptional regulator, AraC family compare
PP_1022 -1.0 -3.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4120 -1.0 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_1346 -1.0 -2.7 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3411 -1.0 -1.2 conserved protein of unknown function compare
PP_1083 -1.0 -2.7 (2Fe-2S)-binding protein compare
PP_2136 -1.0 -2.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_t49 -1.0 -2.3 tRNA-Met compare
PP_5202 -1.0 -2.1 putative cell division protein compare
PP_4260 -1.0 -2.6 conserved protein of unknown function compare
PP_1303 -1.0 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_0363 -1.0 -4.3 8-amino-7-oxononanoate synthase compare
PP_1655 -1.0 -2.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5217 -1.0 -4.3 Polyphosphate kinase compare
PP_4830 -1.0 -2.3 precorrin-6Y C(5,15)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms