Experiment set21IT038 for Pseudomonas simiae WCS417

Compare to:

growth on LB_noSalt plate

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.2 -1.4 deoxycytidine triphosphate deaminase compare
PS417_27800 -3.8 -9.2 exodeoxyribonuclease III compare
PS417_08125 -3.6 -1.7 prephenate dehydratase compare
PS417_18310 -3.5 -3.4 hypothetical protein compare
PS417_20985 -3.4 -4.3 porin compare
PS417_22565 -3.3 -2.1 formyltetrahydrofolate deformylase compare
PS417_23770 -3.0 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_01920 -2.9 -2.8 ATP-dependent protease subunit HslV compare
PS417_01915 -2.7 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00045 -2.5 -2.9 glycerol acyltransferase compare
PS417_24745 -2.5 -3.7 gamma-glutamyl phosphate reductase compare
PS417_27195 -2.3 -2.2 N-acetylglutamate synthase compare
PS417_27865 -2.3 -5.4 LysR family transcriptional regulator compare
PS417_27795 -2.3 -1.2 orotate phosphoribosyltransferase compare
PS417_03260 -2.2 -2.9 5S ribosomal RNA compare
PS417_02485 -2.1 -4.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06680 -2.1 -12.8 nuclease PIN compare
PS417_27870 -2.0 -5.4 ATP-dependent DNA helicase RecG compare
PS417_23775 -1.9 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_22445 -1.9 -4.8 ATP-dependent DNA helicase RuvB compare
PS417_24935 -1.9 -1.5 hypothetical protein compare
PS417_26990 -1.8 -1.6 RNA pyrophosphohydrolase compare
PS417_01605 -1.8 -2.1 phosphoglycerate mutase compare
PS417_16310 -1.8 -5.4 membrane protein compare
PS417_06150 -1.8 -4.0 SAM-dependent methlyltransferase compare
PS417_17215 -1.7 -4.0 peptidylprolyl isomerase compare
PS417_23545 -1.7 -3.1 gamma-glutamyl kinase compare
PS417_03560 -1.7 -2.4 GTP-binding protein compare
PS417_04590 -1.7 -7.4 methyltransferase compare
PS417_02280 -1.6 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_02270 -1.6 -5.5 carbamoyltransferase compare
PS417_22450 -1.6 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_25315 -1.5 -6.3 membrane protein compare
PS417_06100 -1.5 -2.3 SAM-dependent methyltransferase compare
PS417_09470 -1.5 -1.1 hypothetical protein compare
PS417_26730 -1.5 -0.9 pyrroline-5-carboxylate reductase compare
PS417_12585 -1.4 -7.4 acriflavine resistance protein B compare
PS417_24500 -1.4 -3.9 DEAD/DEAH box helicase compare
PS417_27510 -1.3 -5.4 disulfide bond formation protein B compare
PS417_06835 -1.3 -2.0 phospholipase compare
PS417_02975 -1.3 -6.5 3-dehydroquinate dehydratase compare
PS417_24710 -1.3 -5.8 lipoprotein compare
PS417_27315 -1.3 -1.5 hypothetical protein compare
PS417_04365 -1.3 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15250 -1.3 -3.6 DNA repair protein compare
PS417_06530 -1.3 -3.7 membrane protein compare
PS417_13510 -1.3 -1.4 polyketide cyclase compare
PS417_23995 -1.3 -1.1 preprotein translocase subunit SecG compare
PS417_08220 -1.3 -0.8 epimerase compare
PS417_13075 -1.2 -1.7 hypothetical protein compare
PS417_06685 -1.2 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_07565 -1.2 -2.7 hypothetical protein compare
PS417_11705 -1.2 -5.8 cyclic peptide transporter compare
PS417_04920 -1.2 -3.3 GntR family transcriptional regulator compare
PS417_04650 -1.2 -0.8 D-alanine--D-alanine ligase compare
PS417_00755 -1.2 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_12595 -1.2 -1.9 transcriptional regulator compare
PS417_00535 -1.2 -3.4 Holliday junction resolvase compare
PS417_04585 -1.1 -1.1 hypothetical protein compare
PS417_17160 -1.1 -1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_21480 -1.1 -1.5 23S rRNA pseudouridylate synthase compare
PS417_28070 -1.1 -6.1 phosphate ABC transporter ATP-binding protein compare
PS417_00510 -1.1 -0.9 membrane protein compare
PS417_28515 -1.1 -3.1 16S rRNA methyltransferase compare
PS417_24615 -1.1 -1.4 hypothetical protein compare
PS417_04595 -1.1 -2.4 cell division protein MraZ compare
PS417_10095 -1.1 -1.8 hypothetical protein compare
PS417_18710 -1.1 -6.3 hypothetical protein compare
PS417_20030 -1.1 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_21630 -1.0 -1.9 magnesium transporter compare
PS417_20855 -1.0 -1.6 hypothetical protein compare
PS417_19425 -1.0 -1.0 allantoicase compare
PS417_23915 -1.0 -4.9 pantoate--beta-alanine ligase compare
PS417_03000 -1.0 -2.8 translation initiation factor Sui1 compare
PS417_08230 -1.0 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08335 -1.0 -1.1 hypothetical protein compare
PS417_23375 -1.0 -1.4 cytochrome C oxidase compare
PS417_06600 -1.0 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_17890 -1.0 -4.9 3-oxoacyl-ACP reductase compare
PS417_05985 -1.0 -1.6 chemotaxis protein CheY compare
PS417_23370 -1.0 -4.1 protoheme IX farnesyltransferase compare
PS417_02555 -1.0 -7.2 exoribonuclease R compare
PS417_19400 -1.0 -3.4 amino acid transporter LysE compare
PS417_19350 -1.0 -3.4 GTP cyclohydrolase compare
PS417_20610 -0.9 -1.2 hypothetical protein compare
PS417_02880 -0.9 -1.5 copper chaperone compare
PS417_03815 -0.9 -2.9 DNA transporter compare
PS417_00065 -0.9 -1.6 3-methyladenine DNA glycosylase compare
PS417_24620 -0.9 -2.1 hypothetical protein compare
PS417_22570 -0.9 -0.7 H-NS histone compare
PS417_18360 -0.9 -1.9 hypothetical protein compare
PS417_22205 -0.9 -5.1 potassium transporter TrkH compare
PS417_02225 -0.9 -2.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08135 -0.9 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07710 -0.9 -5.6 membrane protein compare
PS417_04375 -0.9 -2.8 ABC transporter ATP-binding protein compare
PS417_19955 -0.9 -1.8 hypothetical protein compare
PS417_22520 -0.9 -1.0 histidine kinase compare
PS417_07615 -0.9 -3.8 TetR family transcriptional regulator compare
PS417_09325 -0.9 -3.3 peptidase S41 compare
PS417_28020 -0.9 -1.6 chorismate--pyruvate lyase compare
PS417_21070 -0.9 -1.6 aconitate hydratase compare
PS417_06970 -0.9 -1.3 LysR family transcriptional regulator compare
PS417_09460 -0.9 -2.0 alkanesulfonate monooxygenase compare
PS417_08540 -0.9 -2.1 RNA helicase compare
PS417_12375 -0.9 -2.1 serine/threonine protein phosphatase compare
PS417_03300 -0.9 -2.2 alanine acetyltransferase compare
PS417_26900 -0.9 -1.5 L-cystine transporter tcyP compare
PS417_22810 -0.9 -1.6 DNA base-flipping protein YbaZ compare
PS417_10245 -0.9 -1.4 hypothetical protein compare
PS417_27585 -0.9 -2.5 diaminopimelate epimerase compare
PS417_18235 -0.9 -2.7 nitrile hydratase compare
PS417_22990 -0.8 -1.1 iron dicitrate transport regulator FecR compare
PS417_19600 -0.8 -1.1 exonuclease compare
PS417_00080 -0.8 -6.0 potassium transporter peripheral membrane component compare
PS417_27075 -0.8 -3.3 thiol-disulfide isomerase compare
PS417_20140 -0.8 -2.5 nucleoprotein/polynucleotide-associated enzyme compare
PS417_22620 -0.8 -1.8 pyruvate kinase compare
PS417_15095 -0.8 -2.4 hypothetical protein compare
PS417_22840 -0.8 -1.2 tRNA-Met compare
PS417_11855 -0.8 -2.0 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PS417_07470 -0.8 -1.1 hypothetical protein compare
PS417_14065 -0.8 -3.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23205 -0.8 -4.0 transcriptional regulator compare
PS417_08170 -0.8 -4.7 capsular biosynthesis protein compare
PS417_24835 -0.8 -2.6 hypothetical protein compare
PS417_05165 -0.8 -2.2 cytosol aminopeptidase compare
PS417_12735 -0.8 -1.6 peroxidase compare
PS417_09930 -0.8 -1.2 hypothetical protein compare
PS417_26370 -0.8 -2.7 RNA helicase compare
PS417_18850 -0.8 -2.1 hypothetical protein compare
PS417_02255 -0.8 -1.3 lipopolysaccharide kinase compare
PS417_26100 -0.8 -2.9 amino acid ABC transporter compare
PS417_10055 -0.8 -1.6 hypothetical protein compare
PS417_08250 -0.8 -1.0 competence protein ComEA compare
PS417_04170 -0.8 -3.8 stringent starvation protein A compare
PS417_20930 -0.8 -4.3 50S rRNA methyltransferase compare
PS417_28080 -0.8 -4.9 phosphate ABC transporter permease compare
PS417_26755 -0.8 -2.3 nucleoside-triphosphate diphosphatase compare
PS417_02575 -0.8 -3.1 membrane protein compare
PS417_27125 -0.8 -4.5 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_26650 -0.8 -5.6 histidine kinase compare
PS417_01950 -0.8 -3.2 malate dehydrogenase compare
PS417_02560 -0.8 -1.5 23S rRNA methyltransferase compare
PS417_24155 -0.8 -1.3 ATP-binding protein compare
PS417_00155 -0.7 -1.7 2-dehydro-3-deoxygalactonokinase compare
PS417_07170 -0.7 -3.5 hypothetical protein compare
PS417_06395 -0.7 -2.0 amino acid transporter compare
PS417_13800 -0.7 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_09585 -0.7 -3.5 acetyltransferase compare
PS417_07120 -0.7 -3.4 RNA polymerase sigma-H factor compare
PS417_21760 -0.7 -0.9 hypothetical protein compare
PS417_08130 -0.7 -1.5 aspartate aminotransferase compare
PS417_02475 -0.7 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_23390 -0.7 -2.6 ubiquinol oxidase subunit II compare
PS417_16490 -0.7 -1.3 cell division protein FtsK compare
PS417_17980 -0.7 -2.5 ABC transporter permease compare
PS417_08620 -0.7 -0.8 hypothetical protein compare
PS417_23380 -0.7 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_23950 -0.7 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_11810 -0.7 -1.7 oxidoreductase compare
PS417_24525 -0.7 -1.3 nuclease compare
PS417_19095 -0.7 -1.3 hypothetical protein compare
PS417_21625 -0.7 -0.9 DNA-binding protein compare
PS417_17240 -0.7 -2.4 trigger factor compare
PS417_10400 -0.7 -2.3 membrane protein compare
PS417_24030 -0.7 -1.4 MFS transporter compare
PS417_26175 -0.7 -0.8 sarcosine oxidase subunit gamma compare
PS417_02495 -0.7 -2.2 GTPase HflX compare
PS417_04185 -0.7 -1.8 hypothetical protein compare
PS417_24085 -0.7 -1.9 protein RnfH compare
PS417_12855 -0.7 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01995 -0.7 -1.7 hypothetical protein compare
PS417_06895 -0.7 -2.4 DNA-binding protein compare
PS417_10505 -0.7 -2.6 hypothetical protein compare
PS417_12515 -0.6 -1.5 lactate dehydrogenase compare
PS417_13305 -0.6 -0.9 hypothetical protein compare
PS417_19475 -0.6 -3.0 pseudouridine synthase compare
PS417_04835 -0.6 -1.5 hemolysin D compare
PS417_00580 -0.6 -2.1 acyl-CoA dehydrogenase compare
PS417_00705 -0.6 -1.1 MarR family transcriptional regulator compare
PS417_23385 -0.6 -3.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_21915 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_18055 -0.6 -0.9 general secretion pathway protein GspK compare
PS417_00345 -0.6 -1.3 copper-binding protein compare
PS417_10170 -0.6 -2.5 hypothetical protein compare
PS417_21125 -0.6 -3.2 phosphoadenosine phosphosulfate reductase compare
PS417_23095 -0.6 -0.8 exodeoxyribonuclease compare
PS417_03525 -0.6 -0.8 hypothetical protein compare
PS417_21320 -0.6 -2.3 transcriptional regulator compare
PS417_20875 -0.6 -2.0 chromosome segregation protein SMC compare
PS417_27475 -0.6 -1.2 membrane protein compare
PS417_16555 -0.6 -1.0 cupin compare
PS417_20650 -0.6 -3.6 hypothetical protein compare
PS417_09505 -0.6 -2.7 hypothetical protein compare
PS417_05860 -0.6 -1.4 hypothetical protein compare
PS417_15290 -0.6 -1.6 type VI secretion protein compare
PS417_26420 -0.6 -0.9 hypothetical protein compare
PS417_20170 -0.6 -2.2 hypothetical protein compare
PS417_22690 -0.6 -2.5 phosphogluconate dehydratase compare


Specific Phenotypes

For 2 genes in this experiment