Experiment set20S593 for Agrobacterium fabrum C58

Compare to:

Phage 97.3 + bacteria replicate 2

200 most important genes:

  gene name fitness t score description  
Atu0434 -3.4 -2.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4616 -3.0 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu2616 -2.4 -16.3 hypothetical protein compare
Atu0189 -2.4 -5.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0190 -2.2 -12.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2615 -2.2 -16.2 hypothetical protein compare
Atu4897 -2.2 -3.2 hypothetical protein compare
Atu0188 -2.1 -6.4 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -2.0 -12.8 ABC transporter, substrate binding protein (peptide) compare
Atu4618 -1.8 -10.8 dTDP-rhamnose-3,5-epimerase compare
Atu4617 -1.8 -10.7 dTDP-D-glucose-4,6-dehydratase compare
Atu4896 -1.8 -5.1 acetyltransferase compare
Atu0464 -1.7 -7.9 hypothetical protein compare
Atu2183 -1.7 -8.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1030 -1.6 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4615 -1.6 -11.0 glucose-1-phosphate thymidylyltransferase compare
Atu0843 -1.6 -11.8 P type cation (metal) transporter, ATPase component compare
Atu3120 -1.5 -2.0 hypothetical protein compare
Atu4613 -1.5 -10.4 glycosyltransferase compare
Atu4614 -1.5 -7.5 glycosyltransferase compare
Atu3001 -1.4 -3.0 hypothetical protein compare
Atu4166 -1.4 -1.8 UDP-glucose 4-epimerase compare
Atu0031 -1.4 -1.0 PTS system, IIA component compare
Atu4610 -1.4 -10.7 sugar nucleotide epimerase/dehydratase compare
Atu3017 -1.4 -2.0 phosphoglyceromutase compare
Atu1810 -1.3 -1.3 hypothetical protein compare
Atu0331 -1.3 -1.8 sigma-54 modulation protein compare
Atu3311 -1.2 -9.4 phosphomannose isomerase compare
Atu3006 -1.2 -4.2 hypothetical protein compare
Atu0463 -1.2 -3.8 hypothetical protein compare
Atu0450 -1.2 -7.8 transcription antitermination protein compare
Atu3763 -1.2 -1.7 hypothetical protein compare
Atu4894 -1.2 -7.1 transposase compare
Atu3353 -1.2 -6.9 mannose-1-phosphate guanylyltransferase compare
Atu4609 -1.2 -8.8 glycosyltransferase compare
Atu4893 -1.2 -6.1 hypothetical protein compare
Atu6098 -1.1 -0.7 transcriptional regulator, HTH family compare
Atu4887 -1.1 -3.8 hypothetical protein compare
Atu5540 -1.1 -1.0 hypothetical protein compare
Atu3469 -1.1 -1.6 phosphoglyceromutase compare
Atu4608 -1.1 -8.8 hypothetical protein compare
Atu0453 -1.1 -8.2 hypothetical protein compare
Atu3598 -1.1 -0.9 thiol:disulfide interchange protein compare
Atu3012 -1.1 -1.4 hypothetical protein compare
Atu4892 -1.1 -7.8 hypothetical protein compare
Atu0912 -1.1 -1.4 Na+/H+ antiporter compare
Atu4890 -1.0 -2.7 IS426 transposase compare
Atu2073 -1.0 -2.3 membrane protein compare
Atu4711 -1.0 -3.2 two component sensor kinase compare
Atu3010 -1.0 -5.9 hypothetical protein compare
Atu0460 -1.0 -4.9 hypothetical protein compare
Atu0458 -1.0 -6.1 hypothetical protein compare
Atu3019 -1.0 -6.9 hypothetical protein compare
Atu0461 -1.0 -7.2 hypothetical protein compare
Atu8125 -0.9 -6.7 hypothetical protein compare
Atu0457 -0.9 -6.1 hypothetical protein compare
Atu8127 -0.9 -7.8 hypothetical protein compare
Atu0452 -0.9 -6.9 hypothetical protein compare
Atu1573 -0.9 -1.5 hypothetical protein compare
Atu4888 -0.9 -3.6 hypothetical protein compare
Atu8128 -0.9 -6.3 putative bacteriophage P2 tail protein compare
Atu4108 -0.9 -7.2 ribonuclease D compare
Atu0469 -0.9 -5.1 hypothetical protein compare
Atu2722 -0.9 -5.6 porin compare
Atu2634 -0.9 -2.3 hypothetical protein compare
Atu0468 -0.9 -7.0 hypothetical protein compare
Atu1952 -0.9 -1.7 hypothetical protein compare
Atu2555 -0.9 -2.6 L-lysine 2,3-aminomutase compare
Atu8126 -0.9 -5.7 putative phage tail protein I compare
Atu2799 -0.9 -3.5 precorrin-6x reductase compare
Atu8087 -0.9 -1.1 putative peptidoglycan binding protein compare
Atu3023 -0.9 -5.4 sugar ABC transporter permease compare
Atu3506 -0.9 -2.6 hypothetical protein compare
Atu0454 -0.9 -6.8 hypothetical protein compare
Atu0467 -0.9 -3.8 hypothetical protein compare
Atu0436 -0.8 -7.3 hypothetical protein compare
Atu8083 -0.8 -7.0 hypothetical protein compare
Atu3011 -0.8 -2.1 ArsR family transcriptional regulator compare
Atu4889 -0.8 -4.4 hypothetical protein compare
Atu4879 -0.8 -5.1 hypothetical protein compare
Atu0419 -0.8 -2.4 two component sensor kinase compare
Atu0437 -0.8 -5.3 hypothetical protein compare
Atu1364 -0.8 -2.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2379 -0.8 -5.7 phosphomannomutase compare
Atu0050 -0.8 -2.9 two component response regulator compare
Atu2207 -0.8 -2.2 two component sensor kinase compare
Atu3021 -0.8 -5.3 sugar ABC transporter ATPase compare
Atu0470 -0.7 -2.3 hypothetical protein compare
Atu2204 -0.7 -2.3 hypothetical protein compare
Atu0435 -0.7 -2.0 tRNA-Gly compare
Atu0375 -0.7 -1.5 small heat shock protein compare
Atu4874 -0.7 -4.7 hypothetical protein compare
Atu2800 -0.7 -1.4 precorrin-3B C17-methyltransferase compare
Atu2484 -0.7 -1.5 hypothetical protein compare
Atu4881 -0.7 -4.2 hypothetical protein compare
Atu3016 -0.7 -3.8 phosphoglyceromutase compare
Atu2439 -0.7 -0.6 hypothetical protein compare
Atu3015 -0.7 -3.0 hypothetical protein compare
Atu1467 -0.7 -2.0 hypothetical protein compare
Atu6189 -0.7 -1.4 protein secretion chaperone compare
Atu0153 -0.7 -2.0 transcriptional regulator, Fur family compare
Atu4876 -0.6 -4.7 oxidoreductase compare
Atu0885 -0.6 -1.6 hypothetical protein compare
Atu1535 -0.6 -1.4 cytochrome c oxidase, FixQ chain compare
Atu2805 -0.6 -3.6 cobalamin synthesis protein compare
Atu0130 -0.6 -3.0 cytidine deaminase compare
Atu8167 -0.6 -4.2 putative transmembrane protein compare
Atu3634 -0.6 -1.9 penicillin-binding protein dacf precursor compare
Atu2808 -0.6 -3.8 cobyric acid synthase compare
Atu2802 -0.6 -3.3 precorrin-8X methylmutase compare
Atu8029 -0.6 -1.3 hypothetical protein compare
Atu1891 -0.6 -1.6 cobalamin biosynthesis protein compare
Atu3020 -0.6 -3.4 GntR family transcriptional regulator compare
Atu4317 -0.6 -0.8 TetR family transcriptional regulator compare
Atu4148 -0.6 -3.0 UDP-glucuronic acid epimerase compare
Atu0859 -0.6 -1.9 hypothetical protein compare
Atu0471 -0.6 -2.4 hypothetical protein compare
Atu0941 -0.6 -0.7 hypothetical protein compare
Atu3009 -0.6 -1.2 exopolysaccharide production protein compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2728 -0.6 -1.7 beta (1-->2) glucan export ATP-binding protein compare
Atu2804 -0.6 -4.1 cobaltochelatase subunit compare
Atu3018 -0.6 -2.1 hypothetical protein compare
Atu0399 -0.6 -2.1 dihydroorotase compare
Atu4327 -0.6 -2.4 hypothetical protein compare
Atu3013 -0.6 -2.8 hypothetical protein compare
Atu0361 -0.6 -1.7 transcriptional regulator compare
Atu4864 -0.6 -2.7 MarR family transcriptional regulator compare
Atu0051 -0.6 -2.1 two component sensor kinase compare
Atu8202 -0.6 -2.1 hypothetical protein compare
Atu4865 -0.6 -4.0 oxidoreductase compare
Atu2798 -0.6 -2.4 precorrin-6y methyltransferase compare
Atu4878 -0.6 -2.8 hypothetical protein compare
Atu1983 -0.6 -2.9 hypothetical protein compare
Atu2810 -0.6 -3.7 cobalamin biosynthetic protein compare
Atu1527 -0.5 -1.7 nitrogen fixation protein FixS compare
Atu2807 -0.5 -3.4 cob(I)alamin adenosyltransferase compare
Atu3740 -0.5 -2.2 fructose bisphosphate aldolase compare
Atu0842 -0.5 -1.0 hypothetical protein compare
Atu2294 -0.5 -2.8 aminoglycoside N6'-acetyltransferase compare
Atu4873 -0.5 -3.4 TetR family transcriptional regulator compare
Atu1189 -0.5 -1.8 hypothetical protein compare
Atu3022 -0.5 -3.3 sugar ABC transporter permease compare
Atu3537 -0.5 -2.1 hypothetical protein compare
Atu2115 -0.5 -2.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2809 -0.5 -3.2 cobalamin biosynthesis protein compare
Atu1286 -0.5 -2.3 hypothetical protein compare
Atu4884 -0.5 -2.0 hypothetical protein compare
Atu3024 -0.5 -4.3 sugar ABC transporter permease compare
Atu1902 -0.5 -2.5 transketolase compare
Atu2217 -0.5 -2.6 hypothetical protein compare
Atu1457 -0.5 -1.7 hypothetical protein compare
Atu3008 -0.5 -0.7 hypothetical protein compare
Atu3887 -0.5 -3.1 small heat shock protein compare
Atu4880 -0.5 -3.6 AraC family transcriptional regulator compare
Atu4882 -0.5 -1.7 hypothetical protein compare
Atu1028 -0.5 -1.2 hypothetical protein compare
Atu4877 -0.5 -3.4 short-chain dehydrogenase compare
Atu2584 -0.5 -2.4 hypothetical protein compare
Atu1739 -0.5 -1.4 permease compare
Atu1601 -0.5 -2.7 oxygen-independent coproporphyrinogen III oxidase compare
Atu1542 -0.5 -2.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2772 -0.5 -2.5 Invasion protein A compare
Atu2083 -0.5 -1.9 DNA repair protein RecN compare
Atu0499 -0.5 -3.0 hypothetical protein compare
Atu3467 -0.5 -1.8 hypothetical protein compare
Atu1131 -0.5 -2.7 outer membrane protein compare
Atu5125 -0.5 -2.1 GntR family transcriptional regulator compare
Atu4643 -0.5 -1.8 hypothetical protein compare
Atu0462 -0.5 -3.2 endolysin compare
Atu1327 -0.5 -1.5 NADH-ubiquinone oxidoreductase compare
Atu0269 -0.5 -2.1 exodeoxyribonuclease VII large subunit compare
Atu1175 -0.5 -1.0 hypothetical protein compare
Atu0972 -0.5 -3.0 lipA protein compare
Atu4875 -0.5 -2.6 hypothetical protein compare
Atu4072 -0.5 -0.6 nodulation protein N compare
Atu6138 -0.5 -2.0 Repressor of the acc and arc operons compare
Atu3025 -0.5 -3.9 oligo alginate lyase compare
Atu3121 -0.5 -0.8 cold shock protein compare
Atu4669 -0.5 -3.3 hypothetical protein compare
Atu3042 -0.5 -2.8 hypothetical protein compare
Atu3910 -0.5 -1.8 LamB/YcsF family protein compare
Atu4860 -0.5 -2.8 hypothetical protein compare
Atu2796 -0.5 -2.1 precorrin-4 C11-methyltransferase compare
Atu3779 -0.5 -3.4 lytic murein transglycosylase compare
Atu1258 -0.5 -2.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu1291 -0.5 -1.4 hypothetical protein compare
Atu0977 -0.5 -1.9 serine protease DO-like protease compare
Atu1660 -0.5 -1.8 hypothetical protein compare
Atu1838 -0.5 -1.4 ABC transporter, substrate binding protein (amino acid) compare
Atu4099 -0.4 -2.9 hypothetical protein compare
Atu4541 -0.4 -1.5 carboxymuconolactone decarboxylase compare
Atu3610 -0.4 -2.0 transporter compare
Atu2646 -0.4 -2.0 hypothetical protein compare
Atu1191 -0.4 -1.5 hypothetical protein compare
Atu3029 -0.4 -2.8 glucarate dehydratase compare
Atu8023 -0.4 -0.7 hypothetical protein compare
Atu0101 -0.4 -1.8 cytochrome c compare
Atu1447 -0.4 -1.0 two component sensor kinase compare
Atu4866 -0.4 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in phage experiments