Experiment set20IT070 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
PS417_23545 -4.9 -2.4 gamma-glutamyl kinase compare
PS417_22565 -4.5 -1.1 formyltetrahydrofolate deformylase compare
PS417_11705 -4.2 -6.5 cyclic peptide transporter compare
PS417_27795 -4.0 -1.0 orotate phosphoribosyltransferase compare
PS417_27300 -3.8 -0.9 cell division protein ZapA compare
PS417_23775 -3.8 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_26605 -3.7 -1.3 malonate decarboxylase subunit beta compare
PS417_23170 -3.7 -1.8 FeS assembly protein IscX compare
PS417_03100 -3.5 -1.2 pilus assembly protein compare
PS417_03455 -3.4 -2.0 type III secretion protein compare
PS417_24745 -3.3 -1.7 gamma-glutamyl phosphate reductase compare
PS417_01915 -3.2 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06680 -2.3 -6.9 nuclease PIN compare
PS417_06865 -2.2 -2.7 transporter compare
PS417_27940 -2.2 -1.6 type VI secretion protein compare
PS417_07640 -2.2 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_09470 -2.2 -1.2 hypothetical protein compare
PS417_23770 -2.1 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_04650 -2.1 -0.7 D-alanine--D-alanine ligase compare
PS417_26990 -2.1 -0.7 RNA pyrophosphohydrolase compare
PS417_04385 -2.1 -2.7 organic solvent ABC transporter substrate-binding protein compare
PS417_06600 -2.1 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26730 -2.1 -0.7 pyrroline-5-carboxylate reductase compare
PS417_24500 -2.1 -2.8 DEAD/DEAH box helicase compare
PS417_16555 -2.1 -1.5 cupin compare
PS417_27870 -2.0 -2.4 ATP-dependent DNA helicase RecG compare
PS417_02885 -2.0 -1.8 hypothetical protein compare
PS417_25225 -2.0 -1.7 MFS transporter compare
PS417_21630 -2.0 -1.8 magnesium transporter compare
PS417_01605 -1.9 -0.9 phosphoglycerate mutase compare
PS417_23580 -1.9 -1.3 peptidylprolyl isomerase compare
PS417_13250 -1.9 -3.7 ABC transporter compare
PS417_26850 -1.8 -0.8 twin-arginine translocation pathway signal protein compare
PS417_27195 -1.8 -1.1 N-acetylglutamate synthase compare
PS417_07565 -1.8 -1.4 hypothetical protein compare
PS417_20160 -1.7 -2.1 cysteine synthase compare
PS417_23950 -1.7 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_16510 -1.7 -2.9 Clp protease ClpX compare
PS417_06145 -1.7 -0.9 hypothetical protein compare
PS417_22450 -1.7 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_10265 -1.7 -1.8 peptidase compare
PS417_21125 -1.7 -3.8 phosphoadenosine phosphosulfate reductase compare
PS417_21655 -1.6 -1.0 aspartate kinase compare
PS417_20855 -1.6 -1.0 hypothetical protein compare
PS417_13620 -1.6 -1.4 thermostable hemolysin compare
PS417_06445 -1.6 -1.8 iron-siderophore ABC transporter permease compare
PS417_01920 -1.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_20610 -1.6 -1.2 hypothetical protein compare
PS417_13290 -1.6 -2.7 AraC family transcriptional regulator compare
PS417_00650 -1.6 -0.7 LysR family transcriptional regulator compare
PS417_23380 -1.6 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_19425 -1.6 -0.8 allantoicase compare
PS417_00160 -1.6 -2.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_21855 -1.6 -2.6 hypothetical protein compare
PS417_02720 -1.6 -0.8 TetR family transcriptional regulator compare
PS417_08170 -1.5 -7.4 capsular biosynthesis protein compare
PS417_03260 -1.5 -0.9 5S ribosomal RNA compare
PS417_01580 -1.5 -1.3 imidazole glycerol phosphate synthase compare
PS417_02990 -1.5 -2.1 hypothetical protein compare
PS417_01270 -1.5 -1.4 iron ABC transporter substrate-binding protein compare
PS417_17215 -1.4 -1.8 peptidylprolyl isomerase compare
PS417_08685 -1.4 -0.9 flagellar hook-length control protein FliK compare
PS417_25270 -1.4 -1.9 NrdR family transcriptional regulator compare
PS417_03560 -1.4 -1.1 GTP-binding protein compare
PS417_04180 -1.4 -1.9 GntR family transcriptional regulator compare
PS417_08230 -1.4 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_13855 -1.3 -0.9 acetyl-CoA acetyltransferase compare
PS417_04875 -1.3 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_23915 -1.3 -2.9 pantoate--beta-alanine ligase compare
PS417_04865 -1.3 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_10405 -1.3 -0.8 filamentous hemagglutinin compare
PS417_05445 -1.3 -1.0 DNA mismatch repair protein MutT compare
PS417_19620 -1.3 -1.3 hypothetical protein compare
PS417_27135 -1.3 -0.5 glutamine synthetase compare
PS417_05100 -1.2 -1.4 RNA polymerase sigma factor compare
PS417_09590 -1.2 -2.9 membrane protein compare
PS417_17900 -1.2 -1.8 transcriptional regulator compare
PS417_22520 -1.2 -1.2 histidine kinase compare
PS417_02415 -1.2 -2.8 phosphoserine phosphatase compare
PS417_16490 -1.2 -0.9 cell division protein FtsK compare
PS417_05570 -1.2 -2.8 DeoR faimly transcriptional regulator compare
PS417_14075 -1.2 -1.3 hypothetical protein compare
PS417_11340 -1.2 -2.3 prevent-host-death protein compare
PS417_20725 -1.2 -1.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_10275 -1.2 -1.7 histidine kinase compare
PS417_02255 -1.2 -1.6 lipopolysaccharide kinase compare
PS417_15710 -1.2 -1.6 nitrate reductase compare
PS417_10245 -1.2 -1.2 hypothetical protein compare
PS417_25645 -1.2 -2.9 peptidase M23 compare
PS417_26370 -1.2 -2.3 RNA helicase compare
PS417_23105 -1.1 -1.0 hypothetical protein compare
PS417_13255 -1.1 -1.5 ABC transporter compare
PS417_06635 -1.1 -0.9 ferredoxin compare
PS417_13075 -1.1 -1.1 hypothetical protein compare
PS417_16000 -1.1 -1.4 chemotaxis protein CheY compare
PS417_13140 -1.1 -1.0 oxidoreductase compare
PS417_12325 -1.1 -2.1 precorrin-4 C11-methyltransferase compare
PS417_18755 -1.1 -1.0 CrtK compare
PS417_07635 -1.1 -6.1 transcription-repair coupling factor compare
PS417_02270 -1.1 -2.7 carbamoyltransferase compare
PS417_25915 -1.1 -2.2 carbon-nitrogen hydrolase compare
PS417_19780 -1.1 -3.2 anti-anti-sigma factor compare
PS417_08580 -1.1 -2.7 histidine kinase compare
PS417_01095 -1.1 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_24620 -1.1 -2.0 hypothetical protein compare
PS417_07870 -1.1 -1.6 hypothetical protein compare
PS417_04025 -1.1 -3.9 glycine/betaine ABC transporter permease compare
PS417_05345 -1.1 -2.5 exotoxin compare
PS417_07710 -1.1 -3.0 membrane protein compare
PS417_26530 -1.1 -0.8 hypothetical protein compare
PS417_00535 -1.1 -1.7 Holliday junction resolvase compare
PS417_05130 -1.1 -1.3 glutaredoxin compare
PS417_12355 -1.1 -1.4 magnesium chelatase compare
PS417_21395 -1.1 -4.3 radical SAM protein compare
PS417_22945 -1.1 -1.4 phosphoribosylglycinamide formyltransferase compare
PS417_14120 -1.1 -4.6 molybdenum ABC transporter permease compare
PS417_26260 -1.1 -1.1 hypothetical protein compare
PS417_05815 -1.0 -2.6 recombinase RecA compare
PS417_27425 -1.0 -4.5 exopolyphosphatase compare
PS417_19955 -1.0 -1.2 hypothetical protein compare
PS417_13260 -1.0 -4.2 pyochelin synthetase compare
PS417_07820 -1.0 -1.6 transposase compare
PS417_08670 -1.0 -2.1 molybdopterin biosynthesis protein B compare
PS417_02485 -1.0 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04290 -1.0 -1.9 hypothetical protein compare
PS417_12870 -1.0 -1.0 enoyl-CoA hydratase compare
PS417_21360 -1.0 -0.7 termination factor Rho compare
PS417_05905 -1.0 -1.4 hypothetical protein compare
PS417_23475 -1.0 -0.8 hypothetical protein compare
PS417_16045 -1.0 -1.9 acyl-CoA dehydrogenase compare
PS417_12035 -1.0 -1.4 dihydroxyacetone kinase compare
PS417_22015 -1.0 -2.4 hypothetical protein compare
PS417_26010 -1.0 -3.3 amidophosphoribosyltransferase compare
PS417_16195 -1.0 -0.6 AraC family transcriptional regulator compare
PS417_00975 -1.0 -0.9 hypothetical protein compare
PS417_21875 -1.0 -2.2 AraC family transcriptional regulator compare
PS417_15215 -1.0 -1.1 protein activator of alkane oxidation PraA compare
PS417_23095 -1.0 -0.6 exodeoxyribonuclease compare
PS417_11400 -1.0 -0.9 phosphoglycerate mutase compare
PS417_22205 -1.0 -4.2 potassium transporter TrkH compare
PS417_12690 -1.0 -2.5 xylulose kinase compare
PS417_02805 -1.0 -0.9 urease subunit gamma compare
PS417_25765 -1.0 -1.1 transcriptional regulator compare
PS417_11230 -1.0 -2.3 hydroxyacid dehydrogenase compare
PS417_06375 -1.0 -0.5 deoxycytidine triphosphate deaminase compare
PS417_21850 -1.0 -0.8 LysR family transcriptional regulator compare
PS417_14115 -1.0 -3.1 molybdate ABC transporter substrate-binding protein compare
PS417_14270 -1.0 -3.4 phosphate ABC transporter substrate-binding protein compare
PS417_06780 -1.0 -1.7 TetR family transcriptional regulator compare
PS417_12775 -0.9 -2.4 GntR family transcriptional regulator compare
PS417_11810 -0.9 -1.5 oxidoreductase compare
PS417_09915 -0.9 -0.8 hypothetical protein compare
PS417_02770 -0.9 -1.2 membrane protein compare
PS417_15665 -0.9 -1.1 hypothetical protein compare
PS417_02870 -0.9 -3.1 TonB-dependent receptor compare
PS417_04015 -0.9 -1.9 choline ABC transporter permease compare
PS417_16320 -0.9 -1.5 protein tyrosine phosphatase compare
PS417_00385 -0.9 -0.5 Fur family transcriptional regulator compare
PS417_05695 -0.9 -1.8 transcriptional regulator compare
PS417_06490 -0.9 -2.0 hypothetical protein compare
PS417_10395 -0.9 -3.3 amidase compare
PS417_20310 -0.9 -1.3 hypothetical protein compare
PS417_04020 -0.9 -4.3 glycine/betaine ABC transporter substrate-binding protein compare
PS417_22300 -0.9 -0.7 LTXXQ domain protein compare
PS417_14065 -0.9 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24370 -0.9 -0.5 (2Fe-2S)-binding protein compare
PS417_01620 -0.9 -0.9 preprotein translocase subunit SecB compare
PS417_14140 -0.9 -1.1 membrane protein compare
PS417_10345 -0.9 -2.3 MFS transporter compare
PS417_09910 -0.9 -1.4 gifsy-1 prophage protein compare
PS417_16515 -0.9 -1.8 Clp protease ClpS compare
PS417_23015 -0.9 -1.7 NGG1p interacting factor 3 protein, NIF3 compare
PS417_22870 -0.9 -1.5 lipoprotein compare
PS417_26755 -0.9 -1.0 nucleoside-triphosphate diphosphatase compare
PS417_02370 -0.9 -0.9 ADP-ribose pyrophosphatase compare
PS417_20045 -0.9 -3.6 threonine-phosphate decarboxylase compare
PS417_16845 -0.9 -1.5 monovalent cation/H+ antiporter subunit E compare
PS417_08245 -0.9 -0.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24315 -0.9 -2.5 catalase compare
PS417_10870 -0.9 -1.6 GABA permease compare
PS417_12505 -0.9 -2.5 peptidase compare
PS417_06245 -0.9 -0.8 zinc metallopeptidase RseP compare
PS417_26175 -0.9 -0.5 sarcosine oxidase subunit gamma compare
PS417_08665 -0.9 -2.5 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_13145 -0.9 -0.9 50S ribosomal protein L21 compare
PS417_12005 -0.9 -1.5 hypothetical protein compare
PS417_27245 -0.8 -1.9 aminotransferase DegT compare
PS417_10435 -0.8 -2.6 serine/threonine protein kinase compare
PS417_16735 -0.8 -2.1 aldehyde dehydrogenase compare
PS417_14260 -0.8 -1.6 phosphate ABC transporter permease compare
PS417_03145 -0.8 -1.1 acetyl-CoA acetyltransferase compare
PS417_21990 -0.8 -1.2 LacI family transcriptional regulator compare
PS417_10480 -0.8 -1.3 glutathione S-transferase compare
PS417_21830 -0.8 -1.9 TetR family transcriptional regulator compare
PS417_03525 -0.8 -0.9 hypothetical protein compare
PS417_24430 -0.8 -0.8 3-dehydroquinate dehydratase compare
PS417_23485 -0.8 -1.8 antibiotic biosynthesis monooxygenase compare
PS417_28220 -0.8 -1.2 LysR family transcriptional regulator compare
PS417_28145 -0.8 -1.4 AraC family transcriptional regulator compare
PS417_07770 -0.8 -0.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment