Experiment set20IT066 for Pseudomonas simiae WCS417
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Group: agar plate interactionMedia: LB
Culturing: fluoroDangl_ML3, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Chorismate Synthesis | 1 |
| Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) | 1 |
| Quinate degradation | 1 |
| Siderophore Pyoverdine | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| quinate degradation I | 3 | 2 | 1 |
| gallate biosynthesis | 3 | 2 | 1 |
| quinate degradation II | 3 | 1 | 1 |
| chorismate biosynthesis from 3-dehydroquinate | 5 | 5 | 1 |
| chorismate biosynthesis I | 7 | 7 | 1 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| chorismate biosynthesis II (archaea) | 12 | 8 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| superpathway of aromatic compound degradation via 3-oxoadipate | 35 | 21 | 1 |
| superpathway of aromatic compound degradation via 2-hydroxypentadienoate | 42 | 15 | 1 |
| superpathway of chorismate metabolism | 59 | 44 | 1 |