Experiment set20IT051 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_27795 -5.0 -1.7 orotate phosphoribosyltransferase compare
PS417_06375 -3.1 -1.5 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_14065 -2.7 -12.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00185 -2.2 -2.9 tryptophan synthase subunit beta compare
PS417_23380 -1.9 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_26730 -1.9 -1.2 pyrroline-5-carboxylate reductase compare
PS417_11705 -1.8 -7.6 cyclic peptide transporter compare
PS417_22450 -1.8 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_23375 -1.8 -2.0 cytochrome C oxidase compare
PS417_06945 -1.7 -1.6 membrane protein compare
PS417_18310 -1.6 -1.2 hypothetical protein compare
PS417_11400 -1.6 -2.0 phosphoglycerate mutase compare
PS417_23390 -1.5 -7.5 ubiquinol oxidase subunit II compare
PS417_23385 -1.5 -7.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_04745 -1.5 -6.4 fusaric acid resistance protein compare
PS417_04735 -1.5 -6.5 LysR family transcriptional regulator compare
PS417_22845 -1.4 -10.7 membrane protein compare
PS417_21125 -1.3 -5.9 phosphoadenosine phosphosulfate reductase compare
PS417_18560 -1.3 -6.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_20985 -1.2 -1.2 porin compare
PS417_22850 -1.2 -5.7 virulence factor family protein compare
PS417_04750 -1.2 -5.5 hypothetical protein compare
PS417_04755 -1.2 -4.9 membrane protein compare
PS417_25725 -1.2 -8.0 anthranilate synthase component I compare
PS417_04740 -1.2 -4.8 RND transporter compare
PS417_01955 -1.1 -6.2 peptidase compare
PS417_19285 -1.1 -2.0 ankyrin compare
PS417_24745 -1.1 -2.4 gamma-glutamyl phosphate reductase compare
PS417_18710 -1.1 -6.6 hypothetical protein compare
PS417_23370 -1.1 -4.3 protoheme IX farnesyltransferase compare
PS417_20160 -1.0 -2.4 cysteine synthase compare
PS417_27800 -1.0 -1.5 exodeoxyribonuclease III compare
PS417_10015 -1.0 -1.3 hypothetical protein compare
PS417_25720 -1.0 -5.1 anthranilate synthase component II compare
PS417_04385 -1.0 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_16060 -1.0 -2.0 protein tolQ compare
PS417_04875 -1.0 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_12290 -1.0 -4.0 sulfite reductase compare
PS417_23770 -1.0 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_25715 -1.0 -4.5 anthranilate phosphoribosyltransferase compare
PS417_16510 -1.0 -3.8 Clp protease ClpX compare
PS417_04390 -1.0 -2.6 toluene tolerance protein compare
PS417_06680 -1.0 -5.8 nuclease PIN compare
PS417_19200 -1.0 -2.8 fumarate hydratase compare
PS417_06530 -1.0 -2.2 membrane protein compare
PS417_27135 -0.9 -0.8 glutamine synthetase compare
PS417_00705 -0.9 -1.4 MarR family transcriptional regulator compare
PS417_26175 -0.9 -1.0 sarcosine oxidase subunit gamma compare
PS417_05595 -0.9 -5.2 ornithine carbamoyltransferase compare
PS417_07565 -0.9 -1.6 hypothetical protein compare
PS417_07470 -0.9 -1.6 hypothetical protein compare
PS417_16465 -0.9 -4.9 sirohydrochlorin ferrochelatase compare
PS417_28070 -0.9 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_28080 -0.9 -6.4 phosphate ABC transporter permease compare
PS417_27245 -0.9 -2.6 aminotransferase DegT compare
PS417_23915 -0.9 -2.6 pantoate--beta-alanine ligase compare
PS417_20855 -0.8 -0.8 hypothetical protein compare
PS417_02895 -0.8 -1.4 precorrin-6Y C5,15-methyltransferase compare
PS417_02720 -0.8 -0.9 TetR family transcriptional regulator compare
PS417_14590 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_00065 -0.8 -1.4 3-methyladenine DNA glycosylase compare
PS417_07820 -0.8 -2.0 transposase compare
PS417_00375 -0.8 -2.1 membrane protein compare
PS417_22810 -0.8 -2.0 DNA base-flipping protein YbaZ compare
PS417_22875 -0.8 -1.7 hypothetical protein compare
PS417_20125 -0.8 -2.6 phosphoribosylglycinamide formyltransferase compare
PS417_23310 -0.8 -3.0 glyoxalase compare
PS417_27915 -0.8 -2.9 type VI secretion system protein ImpM compare
PS417_09575 -0.8 -2.7 glutathione S-transferase compare
PS417_05885 -0.8 -3.6 potassium transporter Kup compare
PS417_18055 -0.8 -1.1 general secretion pathway protein GspK compare
PS417_01605 -0.8 -0.9 phosphoglycerate mutase compare
PS417_16720 -0.8 -1.1 membrane protein compare
PS417_19605 -0.8 -1.0 hypothetical protein compare
PS417_10405 -0.8 -1.0 filamentous hemagglutinin compare
PS417_18235 -0.8 -2.1 nitrile hydratase compare
PS417_07035 -0.8 -4.7 uracil-DNA glycosylase compare
PS417_12845 -0.8 -2.1 NAD(P)H dehydrogenase compare
PS417_08220 -0.8 -0.8 epimerase compare
PS417_00180 -0.7 -1.1 tryptophan synthase subunit alpha compare
PS417_13800 -0.7 -2.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02070 -0.7 -1.1 membrane protein compare
PS417_20130 -0.7 -5.3 dehydrogenase compare
PS417_02695 -0.7 -1.5 protein hupE compare
PS417_25790 -0.7 -2.8 aminoglycoside phosphotransferase compare
PS417_26260 -0.7 -1.3 hypothetical protein compare
PS417_24835 -0.7 -3.7 hypothetical protein compare
PS417_13795 -0.7 -2.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_25225 -0.7 -1.7 MFS transporter compare
PS417_18165 -0.7 -1.2 membrane protein compare
PS417_13455 -0.7 -1.8 alkaline proteinase inhibitor compare
PS417_03385 -0.7 -1.1 flavin reductase compare
PS417_14600 -0.7 -1.8 bleomycin resistance protein compare
PS417_01590 -0.7 -1.4 polysaccharide deacetylase compare
PS417_08360 -0.7 -1.0 DoxX family protein compare
PS417_23580 -0.7 -1.2 peptidylprolyl isomerase compare
PS417_27195 -0.7 -1.1 N-acetylglutamate synthase compare
PS417_07770 -0.7 -1.4 hypothetical protein compare
PS417_13140 -0.7 -1.5 oxidoreductase compare
PS417_18160 -0.7 -1.7 YeeE/YedE compare
PS417_20650 -0.7 -3.7 hypothetical protein compare
PS417_08350 -0.7 -1.4 preprotein translocase subunit TatD compare
PS417_13185 -0.7 -1.6 RND transporter compare
PS417_23825 -0.7 -3.5 penicillin-binding protein compare
PS417_23545 -0.7 -0.6 gamma-glutamyl kinase compare
PS417_21780 -0.7 -2.6 argininosuccinate lyase compare
PS417_10025 -0.6 -1.1 bacteriophage lambda NinG family protein compare
PS417_16810 -0.6 -1.4 acyl-CoA dehydrogenase compare
PS417_09200 -0.6 -2.1 ABC transporter compare
PS417_14775 -0.6 -2.8 major facilitator transporter compare
PS417_01815 -0.6 -2.3 peptide ABC transporter ATP-binding protein compare
PS417_02255 -0.6 -1.3 lipopolysaccharide kinase compare
PS417_11175 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_09995 -0.6 -2.0 regulatory protein compare
PS417_28015 -0.6 -1.5 rubredoxin compare
PS417_03310 -0.6 -2.6 carbonate dehydratase compare
PS417_12520 -0.6 -1.2 hypothetical protein compare
PS417_13965 -0.6 -1.9 acetoin utilization protein compare
PS417_08110 -0.6 -2.3 methylthioribose-1-phosphate isomerase compare
PS417_23205 -0.6 -2.9 transcriptional regulator compare
PS417_20170 -0.6 -2.2 hypothetical protein compare
PS417_19335 -0.6 -2.1 isochorismatase compare
PS417_06045 -0.6 -2.0 membrane protein compare
PS417_04050 -0.6 -1.3 peptide ABC transporter ATP-binding protein compare
PS417_11340 -0.6 -1.4 prevent-host-death protein compare
PS417_00510 -0.6 -0.9 membrane protein compare
PS417_22535 -0.6 -2.5 ornithine acetyltransferase compare
PS417_18620 -0.6 -2.9 hypothetical protein compare
PS417_13805 -0.6 -3.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_14905 -0.6 -0.7 C4-dicarboxylate ABC transporter compare
PS417_26270 -0.6 -2.1 AraC family transcriptional regulator compare
PS417_00590 -0.6 -0.8 5S ribosomal RNA compare
PS417_19190 -0.6 -2.1 BolA family transcriptional regulator compare
PS417_07170 -0.6 -1.5 hypothetical protein compare
PS417_22780 -0.6 -2.0 XRE family transcriptional regulator compare
PS417_13855 -0.6 -0.9 acetyl-CoA acetyltransferase compare
PS417_08510 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_03875 -0.6 -1.1 membrane protein compare
PS417_13820 -0.6 -1.9 UDP-glucose 6-dehydrogenase compare
PS417_05905 -0.6 -0.9 hypothetical protein compare
PS417_08990 -0.6 -2.1 ABC transporter substrate-binding protein compare
PS417_12485 -0.6 -2.2 hypothetical protein compare
PS417_25280 -0.6 -1.6 methyltransferase compare
PS417_05300 -0.6 -3.9 glucose dehydrogenase compare
PS417_20645 -0.6 -3.8 membrane protein compare
PS417_24315 -0.5 -2.9 catalase compare
PS417_22990 -0.5 -0.6 iron dicitrate transport regulator FecR compare
PS417_15465 -0.5 -1.8 carboxynorspermidine decarboxylase compare
PS417_15285 -0.5 -0.7 type VI secretion protein compare
PS417_24580 -0.5 -1.5 pseudouridine synthase compare
PS417_19240 -0.5 -1.3 peptidase M42 compare
PS417_20265 -0.5 -1.3 transcriptional regulator compare
PS417_14915 -0.5 -1.6 host specificity protein compare
PS417_25650 -0.5 -2.1 anhydro-N-acetylmuramic acid kinase compare
PS417_25270 -0.5 -1.1 NrdR family transcriptional regulator compare
PS417_06540 -0.5 -0.9 membrane protein compare
PS417_12985 -0.5 -2.3 DNA-binding protein compare
PS417_10265 -0.5 -1.5 peptidase compare
PS417_26240 -0.5 -1.7 N-methylproline demethylase compare
PS417_15115 -0.5 -2.4 exonuclease SbcD compare
PS417_16790 -0.5 -1.3 ABC transporter permease compare
PS417_00160 -0.5 -1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_03365 -0.5 -2.5 transcriptional regulator compare
PS417_02110 -0.5 -1.2 acyl carrier protein compare
PS417_05285 -0.5 -2.4 cobalamin biosynthesis protein CobW compare
PS417_04230 -0.5 -1.5 lipoprotein compare
PS417_00195 -0.5 -1.2 hypothetical protein compare
PS417_12325 -0.5 -1.4 precorrin-4 C11-methyltransferase compare
PS417_17350 -0.5 -1.4 copper resistance protein CopD compare
PS417_01795 -0.5 -4.0 glucosyltransferase MdoH compare
PS417_28225 -0.5 -0.9 hypothetical protein compare
PS417_17415 -0.5 -1.3 histidine kinase compare
PS417_05975 -0.5 -0.6 chemotaxis protein CheW compare
PS417_15935 -0.5 -1.3 Rrf2 family transcriptional regulator compare
PS417_28085 -0.5 -3.6 phosphate-binding protein compare
PS417_18945 -0.5 -2.2 endoribonuclease compare
PS417_17590 -0.5 -1.3 ABC transporter substrate-binding protein compare
PS417_12700 -0.5 -2.3 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_01920 -0.5 -0.6 ATP-dependent protease subunit HslV compare
PS417_07070 -0.5 -1.7 membrane protein compare
PS417_24030 -0.5 -1.5 MFS transporter compare
PS417_19620 -0.5 -1.4 hypothetical protein compare
PS417_23900 -0.5 -2.6 poly(A) polymerase compare
PS417_17580 -0.5 -1.1 citrulline utilization hydrolase (from data) compare
PS417_08195 -0.5 -3.0 hypothetical protein compare
PS417_10480 -0.5 -1.0 glutathione S-transferase compare
PS417_22025 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_04220 -0.5 -0.7 4-carboxymuconolactone decarboxylase compare
PS417_10245 -0.5 -1.1 hypothetical protein compare
PS417_10065 -0.5 -1.5 hypothetical protein compare
PS417_12855 -0.5 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02975 -0.5 -1.3 3-dehydroquinate dehydratase compare
PS417_09600 -0.5 -1.3 glycosyl transferase family 1 compare
PS417_27085 -0.5 -1.6 AraC family transcriptional regulator compare
PS417_22115 -0.5 -1.7 transcriptional regulator compare
PS417_15100 -0.5 -1.1 BatB protein compare
PS417_16395 -0.5 -0.8 arsenate reductase compare
PS417_15875 -0.5 -0.7 LuxR family transcriptional regulator compare
PS417_24535 -0.5 -0.7 membrane protein compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms