Experiment set20IT050 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_27795 -5.0 -1.8 orotate phosphoribosyltransferase compare
PS417_14065 -2.5 -9.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01605 -2.3 -2.2 phosphoglycerate mutase compare
PS417_23770 -2.0 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_27135 -1.9 -1.3 glutamine synthetase compare
PS417_06375 -1.9 -1.3 deoxycytidine triphosphate deaminase compare
PS417_00185 -1.7 -4.6 tryptophan synthase subunit beta compare
PS417_23380 -1.7 -4.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_00180 -1.7 -1.8 tryptophan synthase subunit alpha compare
PS417_27800 -1.6 -1.8 exodeoxyribonuclease III compare
PS417_06530 -1.6 -3.4 membrane protein compare
PS417_20125 -1.6 -3.3 phosphoribosylglycinamide formyltransferase compare
PS417_11705 -1.5 -6.5 cyclic peptide transporter compare
PS417_04365 -1.5 -1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23375 -1.5 -1.6 cytochrome C oxidase compare
PS417_20985 -1.5 -1.4 porin compare
PS417_18560 -1.4 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04745 -1.4 -7.2 fusaric acid resistance protein compare
PS417_27195 -1.4 -1.8 N-acetylglutamate synthase compare
PS417_18710 -1.4 -4.7 hypothetical protein compare
PS417_22845 -1.4 -10.8 membrane protein compare
PS417_25725 -1.3 -8.5 anthranilate synthase component I compare
PS417_04750 -1.3 -6.6 hypothetical protein compare
PS417_16510 -1.3 -4.1 Clp protease ClpX compare
PS417_23385 -1.3 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_01955 -1.3 -7.6 peptidase compare
PS417_17160 -1.3 -1.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_04740 -1.3 -6.2 RND transporter compare
PS417_22850 -1.3 -6.6 virulence factor family protein compare
PS417_04755 -1.3 -5.6 membrane protein compare
PS417_26730 -1.2 -0.8 pyrroline-5-carboxylate reductase compare
PS417_04735 -1.2 -4.7 LysR family transcriptional regulator compare
PS417_25720 -1.2 -3.9 anthranilate synthase component II compare
PS417_06680 -1.2 -7.0 nuclease PIN compare
PS417_25715 -1.2 -4.3 anthranilate phosphoribosyltransferase compare
PS417_23390 -1.1 -7.3 ubiquinol oxidase subunit II compare
PS417_07565 -1.1 -2.2 hypothetical protein compare
PS417_21125 -1.1 -3.8 phosphoadenosine phosphosulfate reductase compare
PS417_04375 -1.0 -1.8 ABC transporter ATP-binding protein compare
PS417_28070 -1.0 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_22450 -1.0 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_20160 -1.0 -2.1 cysteine synthase compare
PS417_20130 -1.0 -7.9 dehydrogenase compare
PS417_07870 -1.0 -2.0 hypothetical protein compare
PS417_08135 -1.0 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24745 -1.0 -1.2 gamma-glutamyl phosphate reductase compare
PS417_15085 -0.9 -2.1 ATPase AAA compare
PS417_26850 -0.9 -1.0 twin-arginine translocation pathway signal protein compare
PS417_02720 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_21630 -0.9 -1.4 magnesium transporter compare
PS417_23915 -0.9 -1.8 pantoate--beta-alanine ligase compare
PS417_28080 -0.9 -6.9 phosphate ABC transporter permease compare
PS417_15955 -0.9 -2.1 secretion protein HylD compare
PS417_12280 -0.9 -2.0 MerR family transcriptional regulator compare
PS417_05105 -0.8 -3.1 membrane protein compare
PS417_23370 -0.8 -2.6 protoheme IX farnesyltransferase compare
PS417_01560 -0.8 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_09600 -0.8 -2.3 glycosyl transferase family 1 compare
PS417_02950 -0.8 -3.4 tRNA-dihydrouridine synthase B compare
PS417_18055 -0.8 -1.3 general secretion pathway protein GspK compare
PS417_13145 -0.8 -1.3 50S ribosomal protein L21 compare
PS417_18235 -0.8 -2.2 nitrile hydratase compare
PS417_03310 -0.8 -4.0 carbonate dehydratase compare
PS417_01630 -0.8 -1.9 hypothetical protein compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_13755 -0.8 -0.9 oxidoreductase compare
PS417_16465 -0.8 -4.2 sirohydrochlorin ferrochelatase compare
PS417_24355 -0.8 -1.6 MFS transporter compare
PS417_02695 -0.7 -1.6 protein hupE compare
PS417_10245 -0.7 -1.5 hypothetical protein compare
PS417_14590 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_07875 -0.7 -0.9 hypothetical protein compare
PS417_03550 -0.7 -1.5 hypothetical protein compare
PS417_14855 -0.7 -3.2 gluconolactonase compare
PS417_20635 -0.7 -1.0 ABC transporter ATP-binding protein compare
PS417_21625 -0.7 -0.8 DNA-binding protein compare
PS417_07035 -0.7 -4.4 uracil-DNA glycosylase compare
PS417_23025 -0.7 -3.3 murein transglycosylase compare
PS417_26260 -0.7 -1.4 hypothetical protein compare
PS417_17590 -0.7 -1.6 ABC transporter substrate-binding protein compare
PS417_25650 -0.7 -2.4 anhydro-N-acetylmuramic acid kinase compare
PS417_08230 -0.7 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08025 -0.7 -0.7 acetylornithine aminotransferase compare
PS417_02270 -0.7 -2.3 carbamoyltransferase compare
PS417_10995 -0.7 -0.9 GntR family transcriptional regulator compare
PS417_27040 -0.7 -1.4 3-phosphoglycerate dehydrogenase compare
PS417_23775 -0.7 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_02280 -0.6 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_14305 -0.6 -2.8 hydroxyproline-2-epimerase compare
PS417_14255 -0.6 -1.3 phosphate import ATP-binding protein PstB compare
PS417_07455 -0.6 -1.1 glutamine amidotransferase compare
PS417_05885 -0.6 -2.4 potassium transporter Kup compare
PS417_27085 -0.6 -2.3 AraC family transcriptional regulator compare
PS417_19520 -0.6 -1.3 transcriptional regulator compare
PS417_05595 -0.6 -4.0 ornithine carbamoyltransferase compare
PS417_23545 -0.6 -1.8 gamma-glutamyl kinase compare
PS417_21760 -0.6 -1.2 hypothetical protein compare
PS417_02975 -0.6 -1.8 3-dehydroquinate dehydratase compare
PS417_00550 -0.6 -0.9 hypothetical protein compare
PS417_18425 -0.6 -1.3 sporulation protein compare
PS417_08680 -0.6 -0.8 flagellar biosynthesis protein FlhB compare
PS417_11175 -0.6 -1.4 AraC family transcriptional regulator compare
PS417_08245 -0.6 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27445 -0.6 -3.7 membrane protein compare
PS417_23475 -0.6 -1.1 hypothetical protein compare
PS417_18250 -0.6 -1.2 chemotaxis protein compare
PS417_20855 -0.6 -0.8 hypothetical protein compare
PS417_02110 -0.6 -1.4 acyl carrier protein compare
PS417_01790 -0.6 -3.5 glucan biosynthesis protein G compare
PS417_00650 -0.6 -0.6 LysR family transcriptional regulator compare
PS417_03655 -0.6 -1.5 short-chain dehydrogenase compare
PS417_15875 -0.6 -1.1 LuxR family transcriptional regulator compare
PS417_05820 -0.6 -1.7 recombinase RecX compare
PS417_21425 -0.6 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_01795 -0.6 -4.0 glucosyltransferase MdoH compare
PS417_00535 -0.6 -1.0 Holliday junction resolvase compare
PS417_01855 -0.6 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_27380 -0.6 -1.4 GntR family transcriptional regulator compare
PS417_22260 -0.6 -2.3 segregation and condensation protein B compare
PS417_08220 -0.6 -0.6 epimerase compare
PS417_00375 -0.6 -1.0 membrane protein compare
PS417_10405 -0.6 -0.8 filamentous hemagglutinin compare
PS417_08580 -0.6 -3.1 histidine kinase compare
PS417_03115 -0.6 -2.9 pilus assembly protein compare
PS417_00195 -0.5 -1.1 hypothetical protein compare
PS417_05300 -0.5 -3.9 glucose dehydrogenase compare
PS417_12565 -0.5 -1.2 2-dehydro-3-deoxygluconokinase compare
PS417_00355 -0.5 -1.8 metal ABC transporter permease compare
PS417_05905 -0.5 -1.1 hypothetical protein compare
PS417_11160 -0.5 -2.4 6-aminohexanoate hydrolase compare
PS417_13965 -0.5 -2.1 acetoin utilization protein compare
PS417_11825 -0.5 -1.3 transcriptional regulator compare
PS417_21915 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_19935 -0.5 -1.2 hypothetical protein compare
PS417_15110 -0.5 -2.4 protein BatD compare
PS417_15885 -0.5 -0.7 GCN5 family acetyltransferase compare
PS417_23900 -0.5 -3.2 poly(A) polymerase compare
PS417_06745 -0.5 -1.3 polysaccharide deacetylase compare
PS417_05985 -0.5 -1.7 chemotaxis protein CheY compare
PS417_13800 -0.5 -1.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_11555 -0.5 -1.5 (2Fe-2S)-binding protein compare
PS417_01430 -0.5 -1.9 chromosome segregation protein SMC compare
PS417_24620 -0.5 -1.8 hypothetical protein compare
PS417_26470 -0.5 -1.4 cytochrome C compare
PS417_26660 -0.5 -1.9 protein PilI compare
PS417_22610 -0.5 -2.5 pilus assembly protein PilZ compare
PS417_24935 -0.5 -0.7 hypothetical protein compare
PS417_17035 -0.5 -0.8 Cro/Cl family transcriptional regulator compare
PS417_25815 -0.5 -2.3 magnesium transporter ApaG compare
PS417_01570 -0.5 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23950 -0.5 -0.8 polynucleotide phosphorylase/polyadenylase compare
PS417_17935 -0.5 -2.1 endoribonuclease L-PSP compare
PS417_19195 -0.5 -1.3 hypothetical protein compare
PS417_13640 -0.5 -1.6 ribose ABC transporter permease compare
PS417_06925 -0.5 -2.4 LysR family transcriptional regulator compare
PS417_12870 -0.5 -0.8 enoyl-CoA hydratase compare
PS417_13175 -0.5 -1.5 iron transporter compare
PS417_19645 -0.5 -0.6 chemotaxis protein compare
PS417_10985 -0.5 -0.6 NADH:flavin oxidoreductase compare
PS417_28225 -0.5 -0.9 hypothetical protein compare
PS417_22945 -0.5 -0.9 phosphoribosylglycinamide formyltransferase compare
PS417_08225 -0.5 -2.0 acetolactate synthase compare
PS417_10870 -0.5 -1.9 GABA permease compare
PS417_02255 -0.5 -1.3 lipopolysaccharide kinase compare
PS417_00390 -0.5 -2.3 ABC transporter substrate-binding protein compare
PS417_15930 -0.5 -2.1 thioredoxin reductase compare
PS417_16720 -0.5 -0.8 membrane protein compare
PS417_14835 -0.5 -1.6 amidase compare
PS417_01030 -0.5 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_16195 -0.5 -0.6 AraC family transcriptional regulator compare
PS417_15805 -0.5 -1.1 transporter compare
PS417_11535 -0.5 -1.0 nicotinate phosphoribosyltransferase compare
PS417_19240 -0.5 -1.2 peptidase M42 compare
PS417_25710 -0.5 -0.8 indole-3-glycerol-phosphate synthase compare
PS417_12660 -0.5 -1.1 hypothetical protein compare
PS417_10320 -0.5 -1.2 hypothetical protein compare
PS417_16055 -0.5 -1.6 biopolymer transporter TolR compare
PS417_08030 -0.5 -2.2 transcriptional regulator compare
PS417_02815 -0.5 -2.0 urea ABC transporter ATP-binding protein compare
PS417_23625 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_09930 -0.4 -1.0 hypothetical protein compare
PS417_12290 -0.4 -2.5 sulfite reductase compare
PS417_09045 -0.4 -1.9 histidine kinase compare
PS417_12935 -0.4 -0.8 RNA polymerase sigma factor compare
PS417_25790 -0.4 -2.4 aminoglycoside phosphotransferase compare
PS417_19440 -0.4 -1.4 purine permease compare
PS417_11345 -0.4 -1.3 membrane protein compare
PS417_09800 -0.4 -1.9 cytosine deaminase compare
PS417_03940 -0.4 -1.4 membrane protein compare
PS417_21000 -0.4 -1.1 CrfX protein compare
PS417_20880 -0.4 -1.1 GntR family transcriptional regulator compare
PS417_21430 -0.4 -0.8 3-oxoacyl-ACP synthase compare
PS417_24030 -0.4 -1.2 MFS transporter compare
PS417_19190 -0.4 -1.5 BolA family transcriptional regulator compare
PS417_01945 -0.4 -1.2 nuclease compare
PS417_12155 -0.4 -1.3 transporter compare
PS417_05100 -0.4 -1.3 RNA polymerase sigma factor compare
PS417_12375 -0.4 -1.1 serine/threonine protein phosphatase compare
PS417_26605 -0.4 -0.8 malonate decarboxylase subunit beta compare
PS417_20610 -0.4 -0.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms