Experiment set20IT048 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most important genes:

  gene name fitness t score description  
PS417_11825 -6.6 -4.3 transcriptional regulator compare
PS417_11820 -6.3 -5.1 histidine kinase compare
PS417_06375 -4.4 -1.5 deoxycytidine triphosphate deaminase compare
PS417_17290 -3.9 -13.0 RND transporter compare
PS417_12695 -3.9 -7.0 mannitol dehydrogenase compare
PS417_09210 -3.7 -2.3 TetR family transcriptional regulator compare
PS417_27245 -3.6 -4.9 aminotransferase DegT compare
PS417_14065 -3.5 -11.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22850 -3.5 -8.6 virulence factor family protein compare
PS417_23545 -3.4 -2.5 gamma-glutamyl kinase compare
PS417_17300 -3.4 -8.4 RND transporter compare
PS417_06245 -3.1 -2.5 zinc metallopeptidase RseP compare
PS417_20115 -3.0 -4.9 hypothetical protein compare
PS417_24745 -2.9 -2.1 gamma-glutamyl phosphate reductase compare
PS417_17295 -2.8 -7.0 RND transporter MFP subunit compare
PS417_04585 -2.8 -2.6 hypothetical protein compare
PS417_22845 -2.8 -16.3 membrane protein conserved
PS417_23025 -2.7 -6.7 murein transglycosylase compare
PS417_04690 -2.7 -5.8 transcriptional regulator compare
PS417_13820 -2.4 -6.8 UDP-glucose 6-dehydrogenase compare
PS417_27795 -2.4 -1.1 orotate phosphoribosyltransferase compare
PS417_26730 -2.4 -1.1 pyrroline-5-carboxylate reductase compare
PS417_22450 -2.4 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_21515 -2.3 -10.0 transcriptional regulator compare
PS417_13795 -2.3 -6.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13790 -2.2 -5.8 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_23770 -2.2 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_04105 -2.2 -13.6 ABC transporter ATP-binding protein compare
PS417_16195 -2.2 -1.5 AraC family transcriptional regulator compare
PS417_06780 -2.1 -3.1 TetR family transcriptional regulator compare
PS417_09325 -2.0 -4.8 peptidase S41 compare
PS417_13255 -2.0 -2.9 ABC transporter compare
PS417_13800 -1.9 -3.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_12005 -1.8 -3.0 hypothetical protein compare
PS417_08420 -1.8 -4.0 lipoprotein compare
PS417_07170 -1.7 -4.5 hypothetical protein compare
PS417_08415 -1.7 -9.6 hypothetical protein compare
PS417_17285 -1.7 -6.6 hypothetical protein compare
PS417_04275 -1.6 -10.2 hypothetical protein compare
PS417_26850 -1.6 -1.1 twin-arginine translocation pathway signal protein compare
PS417_27445 -1.6 -7.1 membrane protein compare
PS417_22375 -1.6 -1.1 cold-shock protein compare
PS417_09225 -1.6 -7.4 C4-dicarboxylate ABC transporter compare
PS417_26985 -1.6 -5.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_03310 -1.6 -4.7 carbonate dehydratase compare
PS417_17785 -1.6 -7.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_22840 -1.5 -1.4 tRNA-Met compare
PS417_01795 -1.5 -9.4 glucosyltransferase MdoH compare
PS417_23390 -1.5 -5.3 ubiquinol oxidase subunit II compare
PS417_15915 -1.5 -1.6 hypothetical protein compare
PS417_01790 -1.4 -5.1 glucan biosynthesis protein G compare
PS417_27435 -1.4 -6.2 polyphosphate kinase compare
PS417_07140 -1.4 -2.4 peptidase M48 compare
PS417_18710 -1.4 -5.6 hypothetical protein compare
PS417_11705 -1.4 -6.0 cyclic peptide transporter compare
PS417_26715 -1.4 -7.0 peptidase P60 conserved
PS417_20855 -1.4 -1.2 hypothetical protein compare
PS417_06530 -1.4 -3.0 membrane protein compare
PS417_03525 -1.4 -1.8 hypothetical protein compare
PS417_02525 -1.3 -6.5 iron ABC transporter permease conserved
PS417_23370 -1.3 -4.3 protoheme IX farnesyltransferase compare
PS417_13805 -1.3 -5.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_07120 -1.3 -5.9 RNA polymerase sigma-H factor compare
PS417_26510 -1.3 -6.3 5,10-methylenetetrahydrofolate reductase compare
PS417_20985 -1.3 -0.9 porin compare
PS417_02280 -1.2 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_12310 -1.2 -4.9 methionine synthase compare
PS417_02530 -1.2 -6.4 iron ABC transporter substrate-binding protein conserved
PS417_14560 -1.2 -5.8 TonB-dependent receptor compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_23375 -1.2 -1.3 cytochrome C oxidase compare
PS417_03560 -1.2 -1.3 GTP-binding protein compare
PS417_23380 -1.2 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_23385 -1.2 -6.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_28350 -1.2 -4.0 fatty acid methyltransferase conserved
PS417_05850 -1.2 -6.6 LysR family transcriptional regulator compare
PS417_12755 -1.1 -1.9 RND transporter compare
PS417_13250 -1.1 -5.4 ABC transporter compare
PS417_23825 -1.1 -4.2 penicillin-binding protein compare
PS417_21510 -1.1 -1.1 histidine kinase compare
PS417_21480 -1.1 -1.2 23S rRNA pseudouridylate synthase compare
PS417_12325 -1.1 -4.1 precorrin-4 C11-methyltransferase compare
PS417_27515 -1.1 -2.3 heme biosynthesis protein HemY compare
PS417_27465 -1.1 -6.2 cystathionine gamma-synthase compare
PS417_01955 -1.1 -6.1 peptidase compare
PS417_00510 -1.0 -1.1 membrane protein compare
PS417_16515 -1.0 -2.7 Clp protease ClpS compare
PS417_20020 -1.0 -6.7 cobalamin synthase compare
PS417_21655 -1.0 -1.0 aspartate kinase compare
PS417_05235 -1.0 -1.8 peptidase inhibitor I42 compare
PS417_23205 -1.0 -2.9 transcriptional regulator compare
PS417_14755 -1.0 -1.6 UV damage repair endonuclease UvdE compare
PS417_04315 -1.0 -2.7 superoxide dismutase compare
PS417_05590 -1.0 -3.4 iron ABC transporter ATP-binding protein compare
PS417_02895 -1.0 -1.5 precorrin-6Y C5,15-methyltransferase compare
PS417_02870 -1.0 -4.3 TonB-dependent receptor compare
PS417_15090 -1.0 -1.3 hypothetical protein compare
PS417_16510 -1.0 -1.7 Clp protease ClpX compare
PS417_15085 -1.0 -2.8 ATPase AAA compare
PS417_06540 -1.0 -1.2 membrane protein compare
PS417_20130 -1.0 -6.2 dehydrogenase compare
PS417_27305 -0.9 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_16320 -0.9 -2.4 protein tyrosine phosphatase compare
PS417_10675 -0.9 -0.9 TetR family transcriptional regulator compare
PS417_10645 -0.9 -5.5 magnesium ABC transporter ATPase compare
PS417_06370 -0.9 -1.2 cold-shock protein compare
PS417_18310 -0.9 -0.8 hypothetical protein compare
PS417_01920 -0.9 -0.8 ATP-dependent protease subunit HslV compare
PS417_01710 -0.9 -3.2 histidine utilization repressor compare
PS417_05525 -0.9 -3.1 Fis family transcriptional regulator compare
PS417_18105 -0.9 -1.2 iron-dicitrate transporter substrate-binding subunit compare
PS417_20050 -0.9 -4.5 cobalamin biosynthesis protein CobD compare
PS417_13050 -0.9 -1.9 N-acetylglucosamine-6-sulfatase compare
PS417_10040 -0.9 -0.8 MFS transporter compare
PS417_27800 -0.9 -0.9 exodeoxyribonuclease III compare
PS417_10025 -0.9 -1.2 bacteriophage lambda NinG family protein compare
PS417_05110 -0.9 -5.1 peptidase conserved
PS417_22690 -0.9 -2.6 phosphogluconate dehydratase compare
PS417_02415 -0.9 -2.8 phosphoserine phosphatase compare
PS417_05510 -0.9 -3.3 alpha/beta hydrolase compare
PS417_26605 -0.9 -1.0 malonate decarboxylase subunit beta compare
PS417_22570 -0.9 -0.6 H-NS histone compare
PS417_24935 -0.8 -0.8 hypothetical protein compare
PS417_08730 -0.8 -0.8 cytochrome C compare
PS417_20040 -0.8 -2.6 cobyric acid synthase compare
PS417_15805 -0.8 -1.4 transporter compare
PS417_19605 -0.8 -1.0 hypothetical protein compare
PS417_24675 -0.8 -1.5 lipoyl synthase compare
PS417_19620 -0.8 -1.6 hypothetical protein compare
PS417_27555 -0.8 -2.5 DNA-binding protein compare
PS417_05010 -0.8 -1.2 IclR family transcriptional regulator compare
PS417_26230 -0.8 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_16950 -0.8 -2.3 fimbrial protein compare
PS417_25180 -0.8 -2.9 hypothetical protein compare
PS417_27585 -0.8 -1.7 diaminopimelate epimerase compare
PS417_00735 -0.8 -3.1 hypothetical protein compare
PS417_23995 -0.8 -0.6 preprotein translocase subunit SecG compare
PS417_20060 -0.8 -5.3 cobyrinic acid a,c-diamide synthase compare
PS417_27865 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_11860 -0.8 -2.8 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_02485 -0.8 -1.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00045 -0.8 -1.2 glycerol acyltransferase compare
PS417_04270 -0.8 -4.3 ribonuclease G compare
PS417_02880 -0.8 -0.9 copper chaperone compare
PS417_06895 -0.8 -1.4 DNA-binding protein compare
PS417_00230 -0.8 -3.4 aminopeptidase compare
PS417_20025 -0.7 -1.0 alpha-ribazole phosphatase compare
PS417_05570 -0.7 -2.8 DeoR faimly transcriptional regulator compare
PS417_05475 -0.7 -1.6 arginase compare
PS417_10305 -0.7 -1.6 hypothetical protein compare
PS417_08045 -0.7 -1.1 uracil permease compare
PS417_13640 -0.7 -2.0 ribose ABC transporter permease compare
PS417_27890 -0.7 -2.4 type VI secretion protein compare
PS417_23800 -0.7 -4.0 ketol-acid reductoisomerase compare
PS417_28070 -0.7 -4.4 phosphate ABC transporter ATP-binding protein compare
PS417_08545 -0.7 -1.5 aromatic ring-opening dioxygenase LigB compare
PS417_07035 -0.7 -4.1 uracil-DNA glycosylase compare
PS417_23820 -0.7 -3.2 hypothetical protein compare
PS417_14935 -0.7 -1.3 transposase compare
PS417_05575 -0.7 -4.2 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_15955 -0.7 -1.6 secretion protein HylD compare
PS417_10985 -0.7 -0.7 NADH:flavin oxidoreductase compare
PS417_16465 -0.7 -4.4 sirohydrochlorin ferrochelatase compare
PS417_01760 -0.7 -1.8 imidazolonepropionase compare
PS417_15200 -0.7 -1.8 protein activator of alkane oxidation PraB compare
PS417_20880 -0.7 -1.8 GntR family transcriptional regulator compare
PS417_09045 -0.7 -3.1 histidine kinase compare
PS417_02890 -0.7 -2.0 cobalt-precorrin-6X reductase compare
PS417_23775 -0.7 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_24710 -0.7 -4.0 lipoprotein compare
PS417_00370 -0.7 -0.6 hypothetical protein compare
PS417_20035 -0.7 -3.1 adenosylcobinamide kinase compare
PS417_22000 -0.7 -1.9 glutathione S-transferase compare
PS417_19195 -0.7 -1.4 hypothetical protein compare
PS417_27295 -0.7 -2.6 hypothetical protein compare
PS417_15590 -0.7 -2.4 hypothetical protein compare
PS417_25985 -0.7 -1.2 dethiobiotin synthetase compare
PS417_21165 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_20775 -0.7 -2.6 coproporphyrinogen III oxidase compare
PS417_26070 -0.7 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_05105 -0.7 -1.8 membrane protein compare
PS417_08295 -0.7 -1.0 ATPase compare
PS417_11585 -0.7 -1.0 LuxR family transcriptional regulator compare
PS417_04180 -0.6 -2.4 GntR family transcriptional regulator compare
PS417_13165 -0.6 -1.7 peroxidase compare
PS417_26975 -0.6 -3.2 membrane protein compare
PS417_20715 -0.6 -1.2 cytochrome Cbb3 compare
PS417_20135 -0.6 -2.6 hypothetical protein compare
PS417_17105 -0.6 -1.3 spore coat protein compare
PS417_01915 -0.6 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00515 -0.6 -3.5 membrane protein compare
PS417_05555 -0.6 -2.2 amino acid ABC transporter permease compare
PS417_17270 -0.6 -3.5 D-alanyl-D-alanine endopeptidase compare
PS417_26770 -0.6 -1.2 tRNA (guanine-N7)-methyltransferase compare
PS417_18440 -0.6 -2.3 hypothetical protein compare
PS417_05535 -0.6 -0.8 Fis family transcriptional regulator compare
PS417_12110 -0.6 -1.1 ATP-binding protein compare
PS417_06770 -0.6 -2.2 multidrug transporter compare
PS417_06645 -0.6 -3.2 RNA polymerase-associated protein RapA compare
PS417_28030 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

For 25 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms