Experiment set20IT047 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most important genes:

  gene name fitness t score description  
PS417_11825 -6.2 -3.7 transcriptional regulator compare
PS417_06375 -4.2 -1.3 deoxycytidine triphosphate deaminase compare
PS417_11820 -3.8 -4.3 histidine kinase compare
PS417_17300 -3.5 -9.0 RND transporter compare
PS417_17290 -3.4 -13.2 RND transporter compare
PS417_01915 -3.2 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22850 -3.2 -10.5 virulence factor family protein compare
PS417_13800 -3.2 -3.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_17295 -3.0 -5.2 RND transporter MFP subunit compare
PS417_23025 -2.8 -6.9 murein transglycosylase compare
PS417_22845 -2.7 -18.1 membrane protein conserved
PS417_04585 -2.7 -2.3 hypothetical protein compare
PS417_08420 -2.6 -6.8 lipoprotein compare
PS417_13820 -2.4 -8.0 UDP-glucose 6-dehydrogenase compare
PS417_12695 -2.4 -4.5 mannitol dehydrogenase compare
PS417_24745 -2.3 -2.0 gamma-glutamyl phosphate reductase compare
PS417_12355 -2.3 -2.1 magnesium chelatase compare
PS417_21515 -2.3 -10.3 transcriptional regulator compare
PS417_27795 -2.3 -1.0 orotate phosphoribosyltransferase compare
PS417_26730 -2.2 -0.9 pyrroline-5-carboxylate reductase compare
PS417_04650 -2.2 -0.9 D-alanine--D-alanine ligase compare
PS417_17645 -2.1 -1.7 RND transporter compare
PS417_02880 -2.1 -1.2 copper chaperone compare
PS417_24615 -2.0 -1.5 hypothetical protein compare
PS417_04105 -2.0 -13.4 ABC transporter ATP-binding protein compare
PS417_27445 -2.0 -10.1 membrane protein compare
PS417_13790 -1.9 -3.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_09470 -1.8 -1.3 hypothetical protein compare
PS417_24370 -1.8 -0.9 (2Fe-2S)-binding protein compare
PS417_07170 -1.8 -3.7 hypothetical protein compare
PS417_17285 -1.7 -8.3 hypothetical protein compare
PS417_14065 -1.7 -7.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13795 -1.7 -4.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_17215 -1.7 -2.3 peptidylprolyl isomerase compare
PS417_04690 -1.7 -5.4 transcriptional regulator compare
PS417_06530 -1.7 -2.2 membrane protein compare
PS417_26805 -1.6 -1.1 cell division protein FtsE compare
PS417_13255 -1.6 -1.7 ABC transporter compare
PS417_26715 -1.6 -5.0 peptidase P60 conserved
PS417_27245 -1.5 -2.8 aminotransferase DegT compare
PS417_06780 -1.5 -3.0 TetR family transcriptional regulator compare
PS417_09325 -1.5 -3.2 peptidase S41 compare
PS417_02110 -1.4 -1.7 acyl carrier protein compare
PS417_23385 -1.4 -6.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_02560 -1.4 -1.7 23S rRNA methyltransferase compare
PS417_01795 -1.4 -9.7 glucosyltransferase MdoH compare
PS417_14245 -1.4 -2.5 hypothetical protein compare
PS417_23390 -1.4 -5.3 ubiquinol oxidase subunit II compare
PS417_20115 -1.3 -1.8 hypothetical protein compare
PS417_00755 -1.3 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_23375 -1.3 -1.2 cytochrome C oxidase compare
PS417_07120 -1.3 -4.5 RNA polymerase sigma-H factor compare
PS417_23825 -1.3 -5.0 penicillin-binding protein compare
PS417_24895 -1.3 -1.2 hypothetical protein compare
PS417_06245 -1.3 -1.2 zinc metallopeptidase RseP compare
PS417_27195 -1.2 -1.1 N-acetylglutamate synthase compare
PS417_04275 -1.2 -7.0 hypothetical protein compare
PS417_03310 -1.2 -4.5 carbonate dehydratase compare
PS417_02915 -1.2 -2.9 precorrin-3B C17-methyltransferase compare
PS417_12110 -1.2 -1.7 ATP-binding protein compare
PS417_11925 -1.2 -1.9 hypothetical protein compare
PS417_14200 -1.2 -1.8 hypothetical protein compare
PS417_04315 -1.2 -3.5 superoxide dismutase compare
PS417_03100 -1.2 -1.0 pilus assembly protein compare
PS417_23770 -1.2 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_26985 -1.2 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05475 -1.2 -2.5 arginase compare
PS417_02530 -1.2 -5.8 iron ABC transporter substrate-binding protein conserved
PS417_28350 -1.2 -4.6 fatty acid methyltransferase conserved
PS417_21510 -1.2 -1.4 histidine kinase compare
PS417_14560 -1.2 -5.9 TonB-dependent receptor compare
PS417_11705 -1.1 -5.1 cyclic peptide transporter compare
PS417_23545 -1.1 -1.3 gamma-glutamyl kinase compare
PS417_09010 -1.1 -1.6 phosphohistidine phosphatase compare
PS417_01605 -1.1 -0.9 phosphoglycerate mutase compare
PS417_16555 -1.1 -1.2 cupin compare
PS417_17240 -1.1 -2.0 trigger factor compare
PS417_23370 -1.1 -2.9 protoheme IX farnesyltransferase compare
PS417_18370 -1.1 -1.8 hypothetical protein compare
PS417_02525 -1.1 -6.7 iron ABC transporter permease conserved
PS417_08415 -1.1 -2.9 hypothetical protein compare
PS417_04960 -1.0 -1.3 hypothetical protein compare
PS417_01790 -1.0 -4.4 glucan biosynthesis protein G compare
PS417_26685 -1.0 -1.6 hypothetical protein compare
PS417_00075 -1.0 -2.9 hypothetical protein compare
PS417_05505 -1.0 -3.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_09225 -1.0 -3.2 C4-dicarboxylate ABC transporter compare
PS417_12325 -1.0 -2.4 precorrin-4 C11-methyltransferase compare
PS417_22840 -1.0 -1.1 tRNA-Met compare
PS417_23380 -1.0 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_13805 -0.9 -4.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_08365 -0.9 -0.8 hypothetical protein compare
PS417_15705 -0.9 -1.5 nitrate reductase compare
PS417_18105 -0.9 -0.9 iron-dicitrate transporter substrate-binding subunit compare
PS417_23205 -0.9 -3.1 transcriptional regulator compare
PS417_13140 -0.9 -1.2 oxidoreductase compare
PS417_05590 -0.9 -4.0 iron ABC transporter ATP-binding protein compare
PS417_27075 -0.9 -1.6 thiol-disulfide isomerase compare
PS417_19555 -0.9 -3.8 RNA polymerase sigma70 compare
PS417_23775 -0.9 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_01435 -0.9 -0.8 hypothetical protein compare
PS417_13250 -0.9 -3.3 ABC transporter compare
PS417_21360 -0.9 -0.8 termination factor Rho compare
PS417_19515 -0.9 -1.9 histidine kinase compare
PS417_27610 -0.9 -4.0 hypothetical protein compare
PS417_01710 -0.9 -3.3 histidine utilization repressor compare
PS417_07875 -0.8 -0.7 hypothetical protein compare
PS417_02045 -0.8 -1.9 3-oxoacyl-ACP synthase compare
PS417_04530 -0.8 -2.0 glycerate dehydrogenase compare
PS417_19505 -0.8 -1.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_19190 -0.8 -1.6 BolA family transcriptional regulator compare
PS417_19275 -0.8 -0.9 hypothetical protein compare
PS417_27435 -0.8 -3.4 polyphosphate kinase compare
PS417_16515 -0.8 -1.6 Clp protease ClpS compare
PS417_19350 -0.8 -2.9 GTP cyclohydrolase compare
PS417_22060 -0.8 -0.7 hypothetical protein compare
PS417_27605 -0.8 -2.8 hypothetical protein compare
PS417_17320 -0.8 -2.4 phenylhydantoinase compare
PS417_12005 -0.8 -1.5 hypothetical protein compare
PS417_10645 -0.8 -5.2 magnesium ABC transporter ATPase compare
PS417_23715 -0.8 -1.4 cupin compare
PS417_03430 -0.8 -2.2 methyltransferase type 11 compare
PS417_25915 -0.7 -2.1 carbon-nitrogen hydrolase compare
PS417_02910 -0.7 -3.0 precorrin-2 C20-methyltransferase compare
PS417_24710 -0.7 -3.3 lipoprotein compare
PS417_21480 -0.7 -0.7 23S rRNA pseudouridylate synthase compare
PS417_27140 -0.7 -1.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_17785 -0.7 -3.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_05545 -0.7 -3.0 amino acid ABC transporter ATP-binding protein compare
PS417_02280 -0.7 -0.6 GlcNAc-PI de-N-acetylase compare
PS417_08730 -0.7 -1.0 cytochrome C compare
PS417_14455 -0.7 -1.5 polyketide cyclase compare
PS417_05500 -0.7 -1.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_09035 -0.7 -2.7 hypothetical protein compare
PS417_26510 -0.7 -3.8 5,10-methylenetetrahydrofolate reductase compare
PS417_20060 -0.7 -3.7 cobyrinic acid a,c-diamide synthase compare
PS417_06645 -0.7 -4.7 RNA polymerase-associated protein RapA compare
PS417_12345 -0.7 -2.8 cobalamin biosynthesis protein CobW compare
PS417_23820 -0.7 -2.2 hypothetical protein compare
PS417_26070 -0.7 -2.2 amino acid ABC transporter substrate-binding protein compare
PS417_14915 -0.7 -1.7 host specificity protein compare
PS417_05010 -0.7 -1.3 IclR family transcriptional regulator compare
PS417_20715 -0.7 -1.3 cytochrome Cbb3 compare
PS417_18020 -0.7 -1.0 hypothetical protein compare
PS417_03790 -0.7 -2.5 pilus assembly protein PilW compare
PS417_12310 -0.7 -3.9 methionine synthase compare
PS417_26270 -0.7 -1.9 AraC family transcriptional regulator compare
PS417_12845 -0.7 -1.8 NAD(P)H dehydrogenase compare
PS417_13445 -0.7 -0.8 D-aminopeptidase compare
PS417_20130 -0.7 -3.1 dehydrogenase compare
PS417_15760 -0.7 -3.0 molybdenum cofactor biosynthesis protein MoaA compare
PS417_21915 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_12535 -0.7 -1.2 nitrilase compare
PS417_16195 -0.7 -0.6 AraC family transcriptional regulator compare
PS417_01960 -0.7 -2.1 pilus assembly protein compare
PS417_07035 -0.7 -2.6 uracil-DNA glycosylase compare
PS417_11405 -0.7 -2.1 precorrin 6A synthase compare
PS417_05850 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_12655 -0.7 -1.5 methionine aminopeptidase compare
PS417_08090 -0.6 -0.5 3-oxoacyl-ACP reductase compare
PS417_11865 -0.6 -1.4 xylose isomerase compare
PS417_18040 -0.6 -0.9 general secretion pathway protein GspN compare
PS417_00175 -0.6 -0.6 CigR compare
PS417_28295 -0.6 -1.8 glutamine synthetase compare
PS417_23615 -0.6 -1.0 sulfate transporter compare
PS417_05110 -0.6 -3.7 peptidase conserved
PS417_04590 -0.6 -2.7 methyltransferase compare
PS417_20050 -0.6 -3.3 cobalamin biosynthesis protein CobD compare
PS417_06540 -0.6 -0.5 membrane protein compare
PS417_18760 -0.6 -1.5 hypothetical protein compare
PS417_14295 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_03400 -0.6 -2.3 D-alanine--D-alanine ligase compare
PS417_11535 -0.6 -1.2 nicotinate phosphoribosyltransferase compare
PS417_26850 -0.6 -0.5 twin-arginine translocation pathway signal protein compare
PS417_18010 -0.6 -1.6 acid phosphatase compare
PS417_19335 -0.6 -1.1 isochorismatase compare
PS417_18150 -0.6 -2.0 chemotaxis protein CheY compare
PS417_08335 -0.6 -1.0 hypothetical protein compare
PS417_24440 -0.6 -3.1 TetR family transcriptional regulator compare
PS417_00550 -0.6 -0.6 hypothetical protein compare
PS417_13290 -0.6 -2.1 AraC family transcriptional regulator compare
PS417_21090 -0.6 -1.1 hypothetical protein compare
PS417_02740 -0.6 -1.3 LysR family transcriptional regulator compare
PS417_25930 -0.6 -3.4 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_01955 -0.6 -3.5 peptidase compare
PS417_09300 -0.6 -1.2 peptidylprolyl isomerase compare
PS417_04270 -0.6 -3.0 ribonuclease G compare
PS417_16270 -0.6 -3.0 hypothetical protein compare
PS417_14260 -0.6 -1.5 phosphate ABC transporter permease compare
PS417_13010 -0.6 -1.0 alpha/beta hydrolase compare
PS417_02270 -0.6 -2.9 carbamoyltransferase compare
PS417_15065 -0.6 -1.7 GntR family transcriptional regulator compare
PS417_13165 -0.6 -1.4 peroxidase compare
PS417_21625 -0.6 -0.5 DNA-binding protein compare
PS417_13055 -0.6 -0.9 aminotransferase compare
PS417_21830 -0.6 -1.9 TetR family transcriptional regulator compare
PS417_19090 -0.6 -2.1 hypothetical protein compare
PS417_05575 -0.6 -3.0 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_06770 -0.6 -2.4 multidrug transporter compare
PS417_05830 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

For 16 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms