Experiment set20IT047 for Pseudomonas simiae WCS417

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Group: supernatant
Media: R2A + supernatant from Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered (0.8 X)
Culturing: fluoroDangl_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Cat_Manuel on 1-Feb-22
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 16 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms

SEED Subsystems

Subsystem	#Specific
Campylobacter Iron Metabolism	2
Cobalt-zinc-cadmium resistance	2
Iron acquisition in Vibrio	2
Transport of Iron	2
Lysine degradation	1
Rhamnose containing glycans	1
Siderophore Pyoverdine	1
Ton and Tol transport systems	1
dTDP-rhamnose synthesis	1
linker unit-arabinogalactan synthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Streptomycin biosynthesis
• Polyketide sugar unit biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
dTDP-β-L-rhamnose biosynthesis	5	5	1
O-antigen building blocks biosynthesis (E. coli)	11	10	1
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis	19	5	1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	33	12	1