Experiment set20IT045 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.7 -1.8 orotate phosphoribosyltransferase compare
PS417_04380 -3.4 -2.2 ABC transporter permease compare
PS417_04650 -2.8 -1.5 D-alanine--D-alanine ligase compare
PS417_08125 -2.7 -1.1 prephenate dehydratase compare
PS417_22450 -2.0 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_11705 -1.6 -6.3 cyclic peptide transporter compare
PS417_26730 -1.6 -1.1 pyrroline-5-carboxylate reductase compare
PS417_20160 -1.5 -2.8 cysteine synthase compare
PS417_19600 -1.4 -1.9 exonuclease compare
PS417_01955 -1.3 -6.9 peptidase compare
PS417_27800 -1.3 -1.5 exodeoxyribonuclease III compare
PS417_00180 -1.2 -1.8 tryptophan synthase subunit alpha compare
PS417_23915 -1.2 -2.5 pantoate--beta-alanine ligase compare
PS417_06540 -1.2 -2.5 membrane protein compare
PS417_07560 -1.2 -1.5 universal stress protein UspA compare
PS417_06680 -1.2 -6.0 nuclease PIN compare
PS417_02415 -1.2 -3.1 phosphoserine phosphatase compare
PS417_27245 -1.2 -3.7 aminotransferase DegT compare
PS417_01915 -1.1 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00185 -1.1 -3.0 tryptophan synthase subunit beta compare
PS417_22795 -1.1 -1.9 exclusion suppressor FxsA compare
PS417_25720 -1.1 -4.2 anthranilate synthase component II compare
PS417_04585 -1.0 -1.7 hypothetical protein compare
PS417_18710 -1.0 -6.3 hypothetical protein compare
PS417_07470 -1.0 -1.4 hypothetical protein compare
PS417_21125 -1.0 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_05535 -1.0 -2.0 Fis family transcriptional regulator compare
PS417_14065 -0.9 -3.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_06600 -0.9 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19285 -0.9 -1.9 ankyrin compare
PS417_07035 -0.9 -6.6 uracil-DNA glycosylase compare
PS417_06145 -0.9 -1.2 hypothetical protein compare
PS417_00975 -0.9 -1.8 hypothetical protein compare
PS417_04875 -0.9 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_09150 -0.8 -1.5 energy transducer TonB compare
PS417_15290 -0.8 -2.0 type VI secretion protein compare
PS417_28080 -0.8 -6.3 phosphate ABC transporter permease compare
PS417_15770 -0.8 -1.3 pyridoxine 5'-phosphate oxidase compare
PS417_23625 -0.8 -2.5 LysR family transcriptional regulator compare
PS417_27340 -0.8 -2.2 NADPH:quinone oxidoreductase compare
PS417_20985 -0.8 -0.9 porin compare
PS417_18070 -0.8 -1.1 general secretion pathway protein GspH compare
PS417_15100 -0.8 -2.1 BatB protein compare
PS417_23900 -0.8 -5.5 poly(A) polymerase compare
PS417_18560 -0.8 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_05570 -0.8 -4.8 DeoR faimly transcriptional regulator compare
PS417_23025 -0.8 -3.1 murein transglycosylase compare
PS417_25715 -0.8 -3.7 anthranilate phosphoribosyltransferase compare
PS417_23775 -0.8 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_08155 -0.8 -1.3 integration host factor subunit beta compare
PS417_12490 -0.8 -1.5 autotransporter adhesin compare
PS417_01285 -0.7 -0.9 haloacid dehalogenase compare
PS417_03260 -0.7 -1.2 5S ribosomal RNA compare
PS417_02070 -0.7 -1.1 membrane protein compare
PS417_25725 -0.7 -5.5 anthranilate synthase component I compare
PS417_11535 -0.7 -1.6 nicotinate phosphoribosyltransferase compare
PS417_23770 -0.7 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_28070 -0.7 -5.4 phosphate ABC transporter ATP-binding protein compare
PS417_07950 -0.7 -1.9 MFS transporter compare
PS417_22845 -0.7 -6.3 membrane protein conserved
PS417_15400 -0.7 -1.4 hypothetical protein compare
PS417_21210 -0.7 -2.0 amidotransferase compare
PS417_06375 -0.7 -0.7 deoxycytidine triphosphate deaminase compare
PS417_01920 -0.7 -1.0 ATP-dependent protease subunit HslV compare
PS417_08350 -0.7 -2.4 preprotein translocase subunit TatD compare
PS417_20125 -0.7 -2.7 phosphoribosylglycinamide formyltransferase compare
PS417_18425 -0.7 -1.5 sporulation protein compare
PS417_08545 -0.7 -1.3 aromatic ring-opening dioxygenase LigB compare
PS417_05325 -0.7 -1.8 fimbrial protein compare
PS417_00455 -0.7 -0.8 hypothetical protein compare
PS417_22520 -0.7 -1.3 histidine kinase compare
PS417_03455 -0.6 -1.5 type III secretion protein compare
PS417_15085 -0.6 -1.8 ATPase AAA compare
PS417_14905 -0.6 -1.5 C4-dicarboxylate ABC transporter compare
PS417_07010 -0.6 -2.0 pseudouridine synthase compare
PS417_27315 -0.6 -0.7 hypothetical protein compare
PS417_15110 -0.6 -3.0 protein BatD compare
PS417_05065 -0.6 -1.0 hypothetical protein compare
PS417_18780 -0.6 -0.6 flavin reductase compare
PS417_08335 -0.6 -1.5 hypothetical protein compare
PS417_27865 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_26230 -0.6 -2.8 electron transfer flavoprotein subunit alpha compare
PS417_02980 -0.6 -0.8 chemotaxis protein compare
PS417_24225 -0.6 -1.1 hypothetical protein compare
PS417_07165 -0.6 -3.9 dihydrodipicolinate synthase compare
PS417_24745 -0.6 -1.0 gamma-glutamyl phosphate reductase compare
PS417_12260 -0.6 -1.5 hypothetical protein compare
PS417_16490 -0.6 -0.8 cell division protein FtsK compare
PS417_16720 -0.6 -1.0 membrane protein compare
PS417_14535 -0.6 -1.9 alpha/beta hydrolase compare
PS417_24500 -0.6 -1.6 DEAD/DEAH box helicase compare
PS417_00535 -0.6 -2.1 Holliday junction resolvase compare
PS417_12325 -0.6 -2.4 precorrin-4 C11-methyltransferase compare
PS417_27595 -0.5 -1.2 recombinase XerC compare
PS417_23845 -0.5 -1.9 hemin ABC transporter ATP-binding protein compare
PS417_21360 -0.5 -0.8 termination factor Rho compare
PS417_04385 -0.5 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_08170 -0.5 -3.4 capsular biosynthesis protein compare
PS417_05650 -0.5 -1.7 leucyl-tRNA synthetase compare
PS417_16465 -0.5 -3.5 sirohydrochlorin ferrochelatase compare
PS417_02105 -0.5 -1.4 acyl carrier protein compare
PS417_27770 -0.5 -1.1 hypothetical protein compare
PS417_05410 -0.5 -1.5 membrane protein compare
PS417_05475 -0.5 -3.1 arginase compare
PS417_24155 -0.5 -0.5 ATP-binding protein compare
PS417_25290 -0.5 -1.6 hypothetical protein compare
PS417_22850 -0.5 -2.5 virulence factor family protein compare
PS417_04390 -0.5 -1.8 toluene tolerance protein compare
PS417_16645 -0.5 -1.8 XRE family transcriptional regulator compare
PS417_27000 -0.5 -1.5 membrane protein compare
PS417_06370 -0.5 -1.1 cold-shock protein compare
PS417_02720 -0.5 -0.7 TetR family transcriptional regulator compare
PS417_00705 -0.5 -0.8 MarR family transcriptional regulator compare
PS417_18205 -0.5 -1.2 aldehyde dehydrogenase compare
PS417_04500 -0.5 -0.8 hypothetical protein compare
PS417_15930 -0.5 -1.6 thioredoxin reductase compare
PS417_06200 -0.5 -2.0 protein-PII uridylyltransferase compare
PS417_04440 -0.5 -1.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_11400 -0.5 -0.8 phosphoglycerate mutase compare
PS417_16640 -0.5 -2.1 toxin compare
PS417_05985 -0.5 -1.2 chemotaxis protein CheY compare
PS417_18540 -0.5 -1.0 colicin V production CvpA compare
PS417_23825 -0.5 -2.4 penicillin-binding protein compare
PS417_15790 -0.5 -1.7 hypothetical protein compare
PS417_24580 -0.5 -1.7 pseudouridine synthase compare
PS417_05550 -0.5 -1.2 amino acid ABC transporter permease compare
PS417_28145 -0.5 -1.6 AraC family transcriptional regulator compare
PS417_01030 -0.5 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_10095 -0.5 -1.0 hypothetical protein compare
PS417_10505 -0.5 -1.8 hypothetical protein compare
PS417_08510 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_26755 -0.5 -1.4 nucleoside-triphosphate diphosphatase compare
PS417_00755 -0.5 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_26260 -0.5 -1.0 hypothetical protein compare
PS417_22565 -0.5 -0.6 formyltetrahydrofolate deformylase compare
PS417_28085 -0.5 -3.5 phosphate-binding protein compare
PS417_19440 -0.5 -1.4 purine permease compare
PS417_09470 -0.5 -0.8 hypothetical protein compare
PS417_00480 -0.5 -2.0 hypothetical protein compare
PS417_01605 -0.5 -0.6 phosphoglycerate mutase compare
PS417_14980 -0.5 -0.7 universal stress protein UspA compare
PS417_15425 -0.5 -1.9 acetyltransferase compare
PS417_12535 -0.5 -1.0 nitrilase compare
PS417_24675 -0.5 -0.7 lipoyl synthase compare
PS417_08590 -0.5 -0.6 hypothetical protein compare
PS417_20825 -0.5 -1.5 drug:proton antiporter compare
PS417_20170 -0.5 -1.4 hypothetical protein compare
PS417_27275 -0.5 -2.6 hypothetical protein compare
PS417_20140 -0.5 -1.3 nucleoprotein/polynucleotide-associated enzyme compare
PS417_22445 -0.4 -1.2 ATP-dependent DNA helicase RuvB compare
PS417_27935 -0.4 -0.8 type VI secretion protein compare
PS417_10985 -0.4 -0.6 NADH:flavin oxidoreductase compare
PS417_07595 -0.4 -1.2 PasA protein compare
PS417_15675 -0.4 -2.0 chemotaxis protein compare
PS417_22315 -0.4 -1.5 DNA-3-methyladenine glycosylase compare
PS417_02255 -0.4 -1.4 lipopolysaccharide kinase compare
PS417_20385 -0.4 -1.6 hypothetical protein compare
PS417_22715 -0.4 -1.5 heme oxygenase compare
PS417_08580 -0.4 -2.2 histidine kinase compare
PS417_03515 -0.4 -1.1 type III secretion protein compare
PS417_06175 -0.4 -1.8 cysteine sulfinate desulfinase compare
PS417_21070 -0.4 -1.4 aconitate hydratase compare
PS417_15105 -0.4 -2.3 membrane protein compare
PS417_24135 -0.4 -1.2 hypothetical protein compare
PS417_19360 -0.4 -1.1 hypothetical protein compare
PS417_17860 -0.4 -1.8 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_24605 -0.4 -1.0 thiamine-phosphate pyrophosphorylase compare
PS417_15775 -0.4 -1.6 short-chain dehydrogenase compare
PS417_18165 -0.4 -1.6 membrane protein compare
PS417_08680 -0.4 -1.1 flagellar biosynthesis protein FlhB compare
PS417_13710 -0.4 -1.4 hypothetical protein compare
PS417_13850 -0.4 -2.2 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_02880 -0.4 -0.6 copper chaperone compare
PS417_24125 -0.4 -1.3 hypothetical protein compare
PS417_00670 -0.4 -2.2 RNA polymerase sigma factor compare
PS417_26695 -0.4 -0.8 uracil phosphoribosyltransferase compare
PS417_14940 -0.4 -1.0 LysR family transcriptional regulator compare
PS417_19055 -0.4 -1.5 ArsR family transcriptional regulator compare
PS417_23435 -0.4 -1.7 serine/threonine protein kinase compare
PS417_27715 -0.4 -1.0 Fe-S oxidoreductase compare
PS417_15090 -0.4 -1.0 hypothetical protein compare
PS417_05040 -0.4 -1.2 amino acid dehydrogenase compare
PS417_18930 -0.4 -0.9 restriction endonuclease subunit S compare
PS417_21755 -0.4 -1.7 hypothetical protein compare
PS417_13545 -0.4 -1.7 arginine aminotransferase compare
PS417_21700 -0.4 -1.5 arginine N-succinyltransferase compare
PS417_09445 -0.4 -1.7 antibiotic biosynthesis monooxygenase compare
PS417_18350 -0.4 -1.6 hypothetical protein compare
PS417_16665 -0.4 -1.0 hypothetical protein compare
PS417_23205 -0.4 -1.4 transcriptional regulator compare
PS417_04710 -0.4 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_12345 -0.4 -2.4 cobalamin biosynthesis protein CobW compare
PS417_03465 -0.4 -0.7 type III secretion protein compare
PS417_20610 -0.4 -0.8 hypothetical protein compare
PS417_27640 -0.4 -0.6 TetR family transcriptional regulator compare
PS417_14550 -0.4 -1.9 acetylpolyamine aminohydrolase compare
PS417_03705 -0.4 -1.2 2-alkenal reductase compare
PS417_20930 -0.4 -2.6 50S rRNA methyltransferase compare
PS417_13950 -0.4 -1.8 LuxR family transcriptional regulator compare
PS417_01385 -0.4 -2.1 NAD-dependent dehydratase compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms