Experiment set20IT039 for Pseudomonas simiae WCS417

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.9 -1.9 orotate phosphoribosyltransferase compare
PS417_06375 -3.2 -1.7 deoxycytidine triphosphate deaminase compare
PS417_00185 -2.0 -3.8 tryptophan synthase subunit beta compare
PS417_23375 -2.0 -3.8 cytochrome C oxidase compare
PS417_26730 -1.9 -1.3 pyrroline-5-carboxylate reductase compare
PS417_20125 -1.7 -6.3 phosphoribosylglycinamide formyltransferase compare
PS417_11705 -1.7 -7.8 cyclic peptide transporter compare
PS417_23770 -1.6 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_00180 -1.5 -2.8 tryptophan synthase subunit alpha compare
PS417_01605 -1.4 -1.6 phosphoglycerate mutase compare
PS417_08220 -1.4 -1.4 epimerase compare
PS417_24745 -1.4 -1.9 gamma-glutamyl phosphate reductase compare
PS417_27800 -1.4 -1.8 exodeoxyribonuclease III compare
PS417_23380 -1.3 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_01950 -1.2 -4.4 malate dehydrogenase compare
PS417_18710 -1.2 -7.8 hypothetical protein compare
PS417_22450 -1.2 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_06685 -1.2 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_15325 -1.1 -1.6 type VI secretion protein compare
PS417_20160 -1.1 -3.0 cysteine synthase compare
PS417_23370 -1.1 -4.8 protoheme IX farnesyltransferase compare
PS417_08125 -1.1 -0.6 prephenate dehydratase compare
PS417_06680 -1.1 -6.0 nuclease PIN compare
PS417_23385 -1.0 -7.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_01915 -1.0 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20985 -1.0 -1.1 porin compare
PS417_13140 -1.0 -1.9 oxidoreductase compare
PS417_21125 -1.0 -4.0 phosphoadenosine phosphosulfate reductase compare
PS417_14590 -1.0 -1.7 LysR family transcriptional regulator compare
PS417_22520 -1.0 -1.9 histidine kinase compare
PS417_15915 -1.0 -1.7 hypothetical protein compare
PS417_27245 -0.9 -3.2 aminotransferase DegT compare
PS417_16515 -0.9 -3.3 Clp protease ClpS compare
PS417_07035 -0.9 -5.9 uracil-DNA glycosylase compare
PS417_04380 -0.9 -1.0 ABC transporter permease compare
PS417_28220 -0.9 -1.5 LysR family transcriptional regulator compare
PS417_23545 -0.9 -1.6 gamma-glutamyl kinase compare
PS417_17645 -0.9 -1.6 RND transporter compare
PS417_18395 -0.8 -1.6 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_13755 -0.8 -1.6 oxidoreductase compare
PS417_22565 -0.8 -0.9 formyltetrahydrofolate deformylase compare
PS417_23995 -0.8 -0.9 preprotein translocase subunit SecG compare
PS417_04270 -0.8 -4.8 ribonuclease G compare
PS417_12455 -0.8 -2.3 hydrolase compare
PS417_22375 -0.8 -0.9 cold-shock protein compare
PS417_17445 -0.8 -2.4 sulfur oxidation protein SoxZ compare
PS417_18780 -0.7 -1.5 flavin reductase compare
PS417_07170 -0.7 -2.6 hypothetical protein compare
PS417_18990 -0.7 -2.8 membrane protein compare
PS417_27870 -0.7 -2.4 ATP-dependent DNA helicase RecG compare
PS417_06600 -0.7 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27585 -0.7 -1.9 diaminopimelate epimerase compare
PS417_02070 -0.7 -1.1 membrane protein compare
PS417_08200 -0.7 -1.8 hypothetical protein compare
PS417_04365 -0.7 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05570 -0.7 -2.6 DeoR faimly transcriptional regulator compare
PS417_13185 -0.7 -1.8 RND transporter compare
PS417_09010 -0.7 -1.6 phosphohistidine phosphatase compare
PS417_14235 -0.7 -1.2 hypothetical protein compare
PS417_05160 -0.7 -0.8 DNA polymerase III subunit chi compare
PS417_26530 -0.7 -1.2 hypothetical protein compare
PS417_15470 -0.6 -2.4 saccharopine dehydrogenase compare
PS417_07120 -0.6 -4.1 RNA polymerase sigma-H factor compare
PS417_20880 -0.6 -2.0 GntR family transcriptional regulator compare
PS417_07565 -0.6 -1.5 hypothetical protein compare
PS417_02280 -0.6 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_08245 -0.6 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_26985 -0.6 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01630 -0.6 -1.3 hypothetical protein compare
PS417_13305 -0.6 -1.1 hypothetical protein compare
PS417_08540 -0.6 -1.6 RNA helicase compare
PS417_18740 -0.6 -2.6 acetyltransferase compare
PS417_05815 -0.6 -2.5 recombinase RecA compare
PS417_07110 -0.6 -2.1 hypothetical protein compare
PS417_02880 -0.6 -0.9 copper chaperone compare
PS417_08590 -0.6 -1.6 hypothetical protein compare
PS417_25915 -0.6 -1.2 carbon-nitrogen hydrolase compare
PS417_10245 -0.6 -1.0 hypothetical protein compare
PS417_10145 -0.6 -1.3 hypothetical protein compare
PS417_22050 -0.6 -1.9 ribonuclease BN compare
PS417_09150 -0.6 -1.7 energy transducer TonB compare
PS417_21015 -0.5 -2.0 EstX protein compare
PS417_02425 -0.5 -3.0 thiosulfate sulfurtransferase compare
PS417_06200 -0.5 -2.4 protein-PII uridylyltransferase compare
PS417_17830 -0.5 -1.9 4-hydroxyphenylacetate isomerase compare
PS417_06635 -0.5 -1.1 ferredoxin compare
PS417_04375 -0.5 -1.2 ABC transporter ATP-binding protein compare
PS417_00375 -0.5 -1.7 membrane protein compare
PS417_00550 -0.5 -0.9 hypothetical protein compare
PS417_09235 -0.5 -0.7 molecular chaperone compare
PS417_09330 -0.5 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_15640 -0.5 -2.4 DNA methylase compare
PS417_07560 -0.5 -0.9 universal stress protein UspA compare
PS417_27445 -0.5 -3.5 membrane protein compare
PS417_16510 -0.5 -1.6 Clp protease ClpX compare
PS417_27705 -0.5 -1.0 amino acid dehydrogenase compare
PS417_26605 -0.5 -1.0 malonate decarboxylase subunit beta compare
PS417_15465 -0.5 -1.7 carboxynorspermidine decarboxylase compare
PS417_17035 -0.5 -0.9 Cro/Cl family transcriptional regulator compare
PS417_19490 -0.5 -2.7 mechanosensitive ion channel protein compare
PS417_18310 -0.5 -0.5 hypothetical protein compare
PS417_24460 -0.5 -1.5 hypothetical protein compare
PS417_09045 -0.5 -2.0 histidine kinase compare
PS417_08860 -0.5 -2.6 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_23725 -0.5 -2.2 methylmalonate-semialdehyde dehydrogenase compare
PS417_08360 -0.5 -0.7 DoxX family protein compare
PS417_27810 -0.5 -3.3 ribonuclease PH compare
PS417_15890 -0.5 -0.9 RNA polymerase sigma factor compare
PS417_18070 -0.5 -0.8 general secretion pathway protein GspH compare
PS417_24240 -0.5 -2.4 membrane protein compare
PS417_20855 -0.5 -0.6 hypothetical protein compare
PS417_24135 -0.5 -0.9 hypothetical protein compare
PS417_26445 -0.5 -1.5 ArsR family transcriptional regulator compare
PS417_22300 -0.5 -0.9 LTXXQ domain protein compare
PS417_16855 -0.4 -1.2 cation:proton antiporter compare
PS417_22640 -0.4 -1.5 cytochrome C biogenesis protein CcmE compare
PS417_13900 -0.4 -2.6 chemotaxis protein CheR compare
PS417_08545 -0.4 -1.2 aromatic ring-opening dioxygenase LigB compare
PS417_17470 -0.4 -1.4 LuxR family transcriptional regulator compare
PS417_02845 -0.4 -1.4 ABC transporter permease compare
PS417_20040 -0.4 -2.6 cobyric acid synthase compare
PS417_01815 -0.4 -0.7 peptide ABC transporter ATP-binding protein compare
PS417_16055 -0.4 -1.2 biopolymer transporter TolR compare
PS417_15540 -0.4 -0.9 NUDIX hydrolase compare
PS417_10370 -0.4 -2.3 ATPase compare
PS417_26805 -0.4 -0.7 cell division protein FtsE compare
PS417_02255 -0.4 -1.5 lipopolysaccharide kinase compare
PS417_04440 -0.4 -1.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_14505 -0.4 -2.4 glycogen debranching protein compare
PS417_07710 -0.4 -1.9 membrane protein compare
PS417_15085 -0.4 -1.9 ATPase AAA compare
PS417_14075 -0.4 -0.8 hypothetical protein compare
PS417_22445 -0.4 -1.0 ATP-dependent DNA helicase RuvB compare
PS417_08365 -0.4 -0.6 hypothetical protein compare
PS417_09065 -0.4 -2.5 short-chain dehydrogenase compare
PS417_23915 -0.4 -2.0 pantoate--beta-alanine ligase compare
PS417_17900 -0.4 -1.2 transcriptional regulator compare
PS417_16265 -0.4 -1.9 hypothetical protein compare
PS417_11180 -0.4 -1.2 TetR family transcriptional regulator compare
PS417_02225 -0.4 -1.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_05120 -0.4 -0.9 RNA polymerase subunit sigma-24 compare
PS417_19665 -0.4 -1.6 flagellar motor protein MotD compare
PS417_23205 -0.4 -2.2 transcriptional regulator compare
PS417_12355 -0.4 -1.0 magnesium chelatase compare
PS417_19955 -0.4 -1.1 hypothetical protein compare
PS417_07985 -0.4 -1.0 AbrB family transcriptional regulator compare
PS417_14325 -0.4 -1.9 AraC family transcriptional regulator compare
PS417_26565 -0.4 -2.0 LysR family transcriptional regulator compare
PS417_04590 -0.4 -1.9 methyltransferase compare
PS417_22175 -0.4 -0.9 amino acid transporter LysE compare
PS417_21430 -0.4 -0.7 3-oxoacyl-ACP synthase compare
PS417_23310 -0.4 -1.8 glyoxalase compare
PS417_07255 -0.4 -1.6 Deoxyribonolactonase (from data) compare
PS417_14255 -0.4 -1.6 phosphate import ATP-binding protein PstB compare
PS417_02630 -0.4 -0.7 NAD synthetase compare
PS417_04750 -0.4 -1.7 hypothetical protein compare
PS417_24500 -0.4 -1.3 DEAD/DEAH box helicase compare
PS417_17450 -0.4 -1.8 amino acid ABC transporter substrate-binding protein compare
PS417_06895 -0.4 -1.0 DNA-binding protein compare
PS417_24400 -0.4 -1.4 peptidase compare
PS417_15630 -0.4 -2.1 DeoR faimly transcriptional regulator compare
PS417_24310 -0.4 -1.2 ankyrin compare
PS417_21700 -0.4 -1.4 arginine N-succinyltransferase compare
PS417_08190 -0.4 -3.0 membrane protein compare
PS417_01560 -0.4 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_19520 -0.4 -0.8 transcriptional regulator compare
PS417_05345 -0.4 -0.9 exotoxin compare
PS417_28350 -0.4 -2.4 fatty acid methyltransferase compare
PS417_16810 -0.4 -1.0 acyl-CoA dehydrogenase compare
PS417_06145 -0.4 -0.6 hypothetical protein compare
PS417_08225 -0.4 -1.9 acetolactate synthase compare
PS417_19475 -0.4 -2.6 pseudouridine synthase compare
PS417_13950 -0.4 -1.8 LuxR family transcriptional regulator compare
PS417_06710 -0.4 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_04185 -0.4 -1.3 hypothetical protein compare
PS417_07175 -0.4 -1.3 beta-lactamase compare
PS417_13640 -0.4 -0.9 ribose ABC transporter permease compare
PS417_09430 -0.4 -1.6 alpha/beta hydrolase compare
PS417_22315 -0.4 -2.2 DNA-3-methyladenine glycosylase compare
PS417_14015 -0.4 -1.2 LysR family transcriptional regulator compare
PS417_17015 -0.4 -1.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_05380 -0.4 -2.5 hypothetical protein compare
PS417_00975 -0.4 -0.8 hypothetical protein compare
PS417_27595 -0.4 -1.2 recombinase XerC compare
PS417_13175 -0.4 -0.7 iron transporter compare
PS417_02720 -0.4 -0.5 TetR family transcriptional regulator compare
PS417_01030 -0.4 -0.8 glutamine ABC transporter substrate-binding protein compare
PS417_11770 -0.4 -1.0 pyruvate dehydrogenase compare
PS417_17410 -0.4 -1.6 membrane protein compare
PS417_16770 -0.4 -2.3 pyridine nucleotide-disulfide oxidoreductase compare
PS417_02950 -0.4 -1.4 tRNA-dihydrouridine synthase B compare
PS417_15560 -0.4 -1.3 hypothetical protein compare
PS417_10940 -0.4 -1.8 sugar ABC transporter substrate-binding protein compare
PS417_16720 -0.4 -0.7 membrane protein compare
PS417_08185 -0.4 -1.3 glycosyl transferase compare
PS417_21355 -0.4 -0.5 hypothetical protein compare
PS417_21345 -0.4 -1.9 GNAT family acetyltransferase compare
PS417_14835 -0.4 -1.1 amidase compare
PS417_24620 -0.4 -0.9 hypothetical protein compare
PS417_13195 -0.4 -0.7 RND transporter MFP subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms