Experiment set20IT012 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source D-Glucose

200 most detrimental genes:

  gene name fitness t score description  
PP_4136 +1.6 1.9 Transcriptional regulator, LuxR family compare
PP_4373 +1.4 11.9 Transcriptional regulator FleQ compare
PP_1410 +1.4 2.4 conserved protein of unknown function compare
PP_5329 +1.3 4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5580 +1.3 3.5 protein of unknown function compare
PP_1623 +1.3 8.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_2907 +1.1 3.3 DNA-binding response regulator compare
PP_4342 +1.1 4.3 flagellar synthesis regulator, putative ATPase compare
PP_0804 +1.1 7.7 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3726 +1.0 1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_0574 +1.0 8.2 DNA-binding response regulator, LuxR family compare
PP_4528 +0.9 1.7 conserved protein of unknown function compare
PP_0805 +0.9 6.2 Outer membrane efflux protein compare
PP_5084 +0.9 6.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0806 +0.9 8.3 putative Surface adhesion protein compare
PP_4353 +0.9 6.4 Flagellar biosynthetic protein fliR compare
PP_5337 +0.9 4.7 LysR family transcriptional regulator compare
PP_4814 +0.9 2.9 ATP-dependent protease La domain protein compare
PP_1692 +0.9 2.9 conserved protein of unknown function compare
PP_5328 +0.8 2.1 putative phosphate transport system permease protein compare
PP_5051 +0.8 3.4 conserved protein of unknown function compare
PP_0803 +0.8 6.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2847 +0.8 2.0 Urease accessory protein UreJ compare
PP_1066 +0.8 3.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4390 +0.8 5.3 flagellar basal-body rod protein FlgC compare
PP_3415 +0.8 4.2 Transcriptional regulator, LacI family compare
PP_4361 +0.8 5.9 Flagellar hook-length control protein FliK compare
PP_4352 +0.8 6.1 flagellin export apparatus, substrate specificity protein compare
PP_3773 +0.8 2.2 conserved protein of unknown function compare
PP_5648 +0.8 4.2 conserved exported protein of unknown function compare
PP_4247 +0.8 1.8 Exonuclease compare
PP_4391 +0.8 5.0 flagellar basal-body rod protein FlgB compare
PP_3902 +0.8 1.8 conserved protein of unknown function compare
PP_5594 +0.7 1.9 conserved protein of unknown function compare
PP_5748 +0.7 1.5 cytochrome c heme lyase subunit compare
PP_4343 +0.7 2.8 Flagellar biosynthesis protein FlhF compare
PP_4365 +0.7 3.6 Flagellar protein FliJ compare
PP_0355 +0.7 2.5 Response regulator compare
PP_5338 +0.7 2.6 aspartate ammonia-lyase compare
PP_1113 +0.7 4.6 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1368 +0.7 3.6 putative membrane protein containing a glycosyltransferase domain compare
PP_5572 +0.7 1.5 protein of unknown function compare
PP_4385 +0.7 3.2 flagellar basal-body rod protein FlgG compare
PP_5604 +0.7 1.0 putative subtilisin-like serine protease compare
PP_3551 +0.7 1.8 DNA-binding response regulator, LuxR family compare
PP_1364 +0.7 4.9 conserved exported protein of unknown function compare
PP_2029 +0.7 2.0 von Willebrand factor type A domain protein compare
PP_3201 +0.7 3.6 BNR domain protein compare
PP_4997 +0.7 2.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4358 +0.7 3.7 flagellar synthesis, switching and energizing component compare
PP_4396 +0.6 2.7 conserved protein of unknown function compare
PP_4904 +0.6 4.4 Flagellar motor rotation protein compare
PP_4386 +0.6 3.9 flagellar basal-body rod protein FlgF compare
PP_2280 +0.6 1.4 conserved protein of unknown function compare
PP_4383 +0.6 2.9 Flagellar P-ring protein compare
PP_5705 +0.6 2.1 protein of unknown function compare
PP_2575 +0.6 1.8 conserved exported protein of unknown function compare
PP_3245 +0.6 2.0 conserved protein of unknown function compare
PP_2794 +0.6 2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0781 +0.6 2.6 conserved protein of unknown function compare
PP_2976 +0.6 1.7 putative transposase compare
PP_4382 +0.6 4.4 Peptidoglycan hydrolase FlgJ compare
PP_1042 +0.6 2.3 Type II secretion system protein K compare
PP_4946 +0.6 4.1 sodium/L-proline transporter compare
PP_1004 +0.6 1.8 conserved protein of unknown function compare
PP_2030 +0.6 2.8 conserved protein of unknown function compare
PP_4388 +0.6 5.1 Flagellar hook protein FlgE compare
PP_3559 +0.6 2.0 glycine betaine ABC transporter (permease) compare
PP_4384 +0.6 4.2 Flagellar L-ring protein compare
PP_1633 +0.6 2.0 conserved exported protein of unknown function compare
PP_0126 +0.6 2.8 Cytochrome c4 compare
PP_0236 +0.6 2.1 NAD(P)H-dependent FMN reductase subunit compare
PP_0963 +0.6 1.2 putative BolA family protein compare
PP_0276 +0.6 1.0 Transcriptional regulator, Cro/CI family compare
PP_4367 +0.6 3.4 Flagellar assembly protein FliH compare
PP_3519 +0.5 1.0 putative Lipoprotein compare
PP_4942 +0.5 1.0 conserved protein of unknown function compare
PP_3876 +0.5 1.7 conserved protein of unknown function compare
PP_4354 +0.5 2.5 flagellar export apparatus subunit compare
PP_2291 +0.5 1.9 conserved protein of unknown function compare
PP_4705 +0.5 2.3 Glyoxalase compare
PP_0319 +0.5 1.5 conserved protein of unknown function compare
PP_0585 +0.5 1.4 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4690 +0.5 2.1 Rieske 2Fe-2S family protein compare
PP_1513 +0.5 2.2 Ribosomal RNA small subunit methyltransferase J compare
PP_2958 +0.5 1.7 Glutaredoxin compare
PP_1142 +0.5 0.9 conserved protein of unknown function compare
PP_0770 +0.5 1.4 PemI-like protein compare
PP_1087 +0.5 3.3 Outer membrane protein, OmpA family compare
PP_2031 +0.5 1.9 conserved protein of unknown function compare
PP_3685 +0.5 2.2 conserved protein of unknown function compare
PP_5218 +0.5 2.6 DedA family protein compare
PP_3903 +0.5 0.9 conserved protein of unknown function compare
PP_5569 +0.5 2.4 protein of unknown function of phage origin compare
PP_2580 +0.5 1.1 conserved protein of unknown function compare
PP_1352 +0.5 1.1 UPF0234 protein PP_1352 compare
PP_2122 +0.5 2.1 molybdenum cofactor biosynthesis protein B compare
PP_0137 +0.5 3.1 glutamate/aspartate-proton DAACS transporter compare
PP_3767 +0.5 2.6 conserved protein of unknown function compare
PP_5658 +0.5 1.1 protein of unknown function compare
PP_t29 +0.5 1.5 tRNA-Ala compare
PP_1048 +0.5 2.0 putative protein secretion protein for export compare
PP_2387 +0.5 1.6 conserved protein of unknown function compare
PP_0250 +0.5 1.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1466 +0.5 2.3 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1864 +0.5 2.0 conserved protein of unknown function compare
PP_5625 +0.5 2.6 conserved protein of unknown function compare
PP_0984 +0.5 1.6 conserved membrane protein of unknown function compare
PP_4366 +0.5 3.9 flagellum-specific ATP synthase compare
PP_0762 +0.5 1.9 Glycerate dehydrogenase compare
PP_4389 +0.5 2.8 Flagellar basal-body rod modification protein FlgD compare
PP_5702 +0.5 2.3 conserved protein of unknown function compare
PP_2972 +0.5 1.1 conserved protein of unknown function compare
PP_2572 +0.5 1.9 conserved protein of unknown function compare
PP_2773 +0.5 1.1 conserved protein of unknown function compare
PP_3888 +0.5 2.2 conserved protein of unknown function compare
PP_4905 +0.5 2.6 Flagellar motor rotation protein compare
PP_4375 +0.5 2.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_2978 +0.5 1.4 conserved protein of unknown function compare
PP_4355 +0.5 1.6 flagellar export apparatus subunit compare
PP_5021 +0.5 2.0 Methyl-accepting chemotaxis transducer compare
PP_4368 +0.5 2.2 flagellar motor switch protein compare
PP_2361 +0.5 2.3 putative chaperone protein compare
PP_3467 +0.5 1.9 Sigma-54 dependent transcriptional regulator compare
PP_1442 +0.5 1.3 conserved protein of unknown function compare
PP_0666 +0.5 2.0 conserved protein of unknown function compare
PP_4337 +0.4 2.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4378 +0.4 3.9 flagellin, filament structural protein compare
PP_2132 +0.4 1.2 Universal stress protein compare
PP_3043 +0.4 0.6 conserved protein of unknown function compare
PP_0108 +0.4 1.8 conserved protein of unknown function compare
PP_5659 +0.4 1.5 protein of unknown function compare
PP_1218 +0.4 1.4 putative acyl-CoA thioesterase compare
PP_4380 +0.4 3.5 Flagellar hook-associated protein FlgL compare
PP_1425 +0.4 2.3 conserved protein of unknown function compare
PP_3938 +0.4 1.2 conserved protein of unknown function compare
PP_2140 +0.4 1.8 conserved protein of unknown function compare
PP_0191 +0.4 1.6 Transcriptional regulatory protein AlgQ compare
PP_2562 +0.4 2.4 conserved protein of unknown function compare
PP_5717 +0.4 1.2 conserved protein of unknown function compare
PP_0153 +0.4 1.4 hypothetical protein compare
PP_4952 +0.4 1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5475 +0.4 0.5 conserved protein of unknown function compare
PP_3058 +0.4 1.8 conserved protein of unknown function compare
PP_4370 +0.4 2.1 Flagellar hook-basal body complex protein FliE compare
PP_1855 +0.4 1.8 conserved exported protein of unknown function compare
PP_0283 +0.4 1.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_1325 +0.4 2.9 putative lipoprotein compare
PP_4534 +0.4 1.7 conserved protein of unknown function compare
PP_5439 +0.4 2.2 conserved protein of unknown function compare
PP_5621 +0.4 1.4 protein of unknown function compare
PP_4381 +0.4 3.4 Flagellar hook-associated protein FlgK compare
PP_2871 +0.4 2.6 Class II aldolase/adducin domain protein compare
PP_3365 +0.4 0.8 Acetolactate synthase compare
PP_4595 +0.4 2.5 putative LRP-like transcriptional regulator compare
PP_3353 +0.4 1.5 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_3449 +0.4 1.6 conserved exported protein of unknown function compare
PP_0220 +0.4 1.8 methionine import ATP-binding protein metN2 compare
PP_3929 +0.4 1.2 conserved protein of unknown function compare
PP_0306 +0.4 1.1 conserved protein of unknown function compare
PP_4331 +0.4 2.9 conserved protein of unknown function compare
PP_5586 +0.4 1.1 exported protein of unknown function compare
PP_5568 +0.4 2.5 conserved membrane protein of unknown function compare
PP_0837 +0.4 2.2 putative regulator of flagellation compare
PP_0825 +0.4 2.0 phosphonates import ATP-binding protein compare
PP_1349 +0.4 2.0 ATP:cob(I)alamin adenosyltransferase compare
PP_5188 +0.4 2.0 putative transcriptional regulator (AsnC/Lrp family) compare
PP_0232 +0.4 0.8 ATP-binding taurine transporter subunit compare
PP_2028 +0.4 1.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2675 +0.4 1.6 Cytochrome c-type protein compare
PP_2358 +0.4 2.1 putative Type 1 pili subunit CsuA/B protein compare
PP_2409 +0.4 1.4 cobalt-zinc-cadmium resistance protein compare
PP_0677 +0.4 1.6 putative Lipoprotein compare
PP_5430 +0.4 1.1 protein of unknown function compare
PP_5069 +0.4 2.0 Thioredoxin 2 compare
PP_1268 +0.4 1.1 putative HtrA suppressor protein sohA compare
PP_4462 +0.4 2.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_3831 +0.4 2.3 conserved protein of unknown function compare
PP_1523 +0.4 1.7 conserved protein of unknown function compare
PP_4356 +0.4 1.4 Flagellar protein FliO compare
PP_5517 +0.4 2.1 conserved exported protein of unknown function compare
PP_4341 +0.4 2.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3073 +0.4 1.7 3-hydroxybutyrate dehydrogenase compare
PP_5073 +0.4 0.9 conserved exported protein of unknown function compare
PP_3400 +0.4 1.5 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_1455 +0.4 1.7 conserved protein of unknown function compare
PP_0999 +0.4 1.0 carbamate kinase compare
PP_0653 +0.4 0.8 conserved protein of unknown function compare
PP_1392 +0.4 2.7 putative NAD-binding protein compare
PP_4572 +0.4 2.8 conserved exported protein of unknown function compare
PP_0512 +0.4 1.3 hypothetical protein compare
PP_5211 +0.4 1.7 ChaC-related protein compare
PP_5255 +0.4 1.2 putative hydrolase compare
PP_2684 +0.4 1.4 conserved membrane protein of unknown function compare
PP_2760 +0.4 2.2 putative ribose transport permease protein compare
PP_4925 +0.4 1.4 conserved protein of unknown function compare
PP_4394 +0.4 2.5 flagella basal body P-ring formation protein compare
PP_0587 +0.4 1.9 conserved exported protein of unknown function compare
PP_2053 +0.4 1.7 conserved protein of unknown function compare
PP_4859 +0.4 2.2 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 5 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms