Experiment set20IT011 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_4364 -6.9 -4.7 putative Anti-sigma F factor antagonist compare
PP_0293 -6.8 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -6.5 -7.8 methionine biosynthesis protein MetW compare
PP_1988 -6.1 -10.2 3-isopropylmalate dehydrogenase compare
PP_0082 -6.1 -4.2 tryptophan synthase alpha chain compare
PP_2371 -5.8 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0967 -5.8 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -5.7 -16.7 homoserine O-acetyltransferase compare
PP_0184 -5.6 -6.7 Argininosuccinate lyase compare
PP_2168 -5.4 -13.9 Transaldolase compare
PP_0083 -5.1 -7.8 tryptophan synthase beta chain compare
PP_4680 -4.8 -16.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -4.8 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -4.8 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_4696 -4.7 -5.6 Nitrogen regulation protein NR(I) compare
PP_4994 -4.7 -6.3 conserved protein of unknown function compare
PP_4678 -4.6 -15.6 Ketol-acid reductoisomerase compare
PP_1088 -4.5 -13.9 Argininosuccinate synthase compare
PP_1995 -4.5 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4902 -4.4 -3.0 Oligoribonuclease compare
PP_0289 -4.4 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_2001 -4.3 -7.6 O-succinylhomoserine sulfhydrylase compare
PP_1986 -4.3 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_5348 -4.2 -9.7 Transcriptional regulator, LysR family compare
PP_0421 -4.2 -7.4 Anthranilate phosphoribosyltransferase compare
PP_1898 -4.2 -5.3 MotA/TolQ/ExbB proton channel family protein compare
PP_0966 -4.2 -10.8 Histidinol dehydrogenase compare
PP_4099 -4.1 -37.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4679 -4.1 -9.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1650 -4.1 -22.5 Sensor protein GacS compare
PP_5347 -4.0 -12.2 pyruvate carboxylase subunit A compare
PP_2327 -4.0 -8.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5185 -3.9 -7.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3999 -3.9 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4804 -3.8 -3.7 RlpA-like lipoprotein compare
PP_5346 -3.8 -7.8 pyruvate carboxylase subunit B compare
PP_1022 -3.8 -5.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0422 -3.8 -5.5 Indole-3-glycerol phosphate synthase compare
PP_0417 -3.7 -16.5 Anthranilate synthase component 1 compare
PP_1985 -3.7 -5.1 3-isopropylmalate dehydratase large subunit compare
PP_1079 -3.6 -7.7 Ornithine carbamoyltransferase compare
PP_4909 -3.5 -8.7 phosphoserine phosphatase compare
PP_1025 -3.4 -11.2 2-isopropylmalate synthase compare
PP_5217 -3.4 -11.3 Polyphosphate kinase compare
PP_5289 -3.4 -4.1 Acetylglutamate kinase compare
PP_5128 -3.3 -6.6 Dihydroxy-acid dehydratase compare
PP_2370 -3.3 -5.4 conserved protein of unknown function compare
PP_0292 -3.3 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -3.2 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5015 -3.2 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1224 -3.2 -5.7 periplasmic subunit of the TolQRA transport system compare
PP_3484 -3.1 -6.0 Response regulator receiver protein compare
PP_0164 -3.1 -8.2 conserved protein of unknown function compare
PP_1231 -3.0 -8.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4785 -3.0 -4.7 conserved exported protein of unknown function compare
PP_0965 -2.9 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2402 -2.9 -3.7 putative Sensor histidine kinase compare
PP_0406 -2.8 -4.6 Nucleotidyltransferase family protein compare
PP_5095 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
PP_0787 -2.6 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4695 -2.5 -8.5 Sensory box histidine kinase compare
PP_4700 -2.4 -2.3 pantothenate synthetase compare
PP_0291 -2.4 -3.1 conserved protein of unknown function compare
PP_1654 -2.4 -3.8 cysteine synthase B compare
PP_0914 -2.4 -8.8 GGDEF domain protein compare
PP_1011 -2.3 -7.4 glucokinase compare
PP_1217 -2.3 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5303 -2.3 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4977 -2.2 -9.3 5,10-methylenetetrahydrofolate reductase compare
PP_3506 -2.1 -5.0 Magnesium chelatase, subunit ChII compare
PP_2328 -2.1 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_1017 -2.1 -8.1 mannose/glucose ABC transporter, permease protein compare
PP_1016 -2.0 -8.1 mannose/glucose ABC transporter, permease protein compare
PP_1015 -2.0 -7.7 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_3417 -2.0 -5.3 D-gluconate transporter compare
PP_0362 -2.0 -10.1 Biotin synthase compare
PP_1656 -1.9 -6.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_3649 -1.9 -4.7 Transcriptional regulator, GntR family compare
PP_5310 -1.9 -6.0 junction-specific ATP-dependent DNA helicase compare
PP_0435 -1.8 -6.1 Peptidase, M23/M37 family compare
PP_1826 -1.8 -3.7 Hydrolase, isochorismatase family compare
PP_1733 -1.8 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_1673 -1.7 -5.4 cobyrinate a,c-diamide synthase compare
PP_2414 -1.7 -2.6 conserved exported protein of unknown function compare
PP_4964 -1.7 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0364 -1.7 -5.4 pimeloyl-[acp] methyl ester esterase compare
PP_1012 -1.7 -4.9 DNA-binding response regulator compare
PP_5104 -1.6 -6.7 thiazole synthase compare
PP_0363 -1.6 -8.6 8-amino-7-oxononanoate synthase compare
PP_1655 -1.6 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2375 -1.6 -9.8 cobalamin-dependent methionine synthase compare
PP_4984 -1.6 -8.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2229 -1.6 -3.6 putative K(+)/H(+) antiporter subunit C compare
PP_1362 -1.6 -3.0 pyruvate kinase II compare
PP_1734 -1.6 -3.1 Probable septum site-determining protein MinC compare
PP_3971 -1.6 -2.1 conserved protein of unknown function compare
PP_2390 -1.6 -6.2 Transcriptional regulator, LysR family compare
PP_1013 -1.5 -5.9 Sensor histidine kinase compare
PP_4832 -1.5 -2.1 Precorrin-6x reductase compare
PP_1233 -1.5 -5.2 sulfurtransferase compare
PP_4699 -1.5 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5014 -1.5 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1366 -1.5 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1381 -1.5 -1.7 4-carboxymuconolactone decarboxylase compare
PP_5110 -1.4 -2.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5035 -1.4 -6.0 Histidine utilization repressor compare
PP_0365 -1.4 -6.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0420 -1.4 -3.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5350 -1.4 -4.0 Transcriptional regulator, RpiR family compare
PP_1702 -1.4 -2.5 Recombination-associated protein RdgC compare
PP_1018 -1.4 -4.5 mannose/glucose ABC transporter - ATP binding subunit compare
PP_3880 -1.4 -2.0 conserved exported protein of unknown function compare
PP_5090 -1.3 -2.0 putative cell division protein compare
PP_1444 -1.3 -8.6 quinoprotein glucose dehydrogenase compare
PP_1303 -1.3 -5.6 Sulfate adenylyltransferase subunit 2 compare
PP_1348 -1.3 -4.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0949 -1.3 -4.1 putative ATP-binding protein UPF0042 compare
PP_1672 -1.3 -3.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0368 -1.3 -8.3 putative Acyl-CoA dehydrogenase compare
PP_2793 -1.3 -2.0 Acyl-CoA dehydrogenase family protein compare
PP_5007 -1.3 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4828 -1.2 -1.8 Precorrin-8X methylmutase compare
PP_2378 -1.2 -2.2 Fe/S biogenesis protein NfuA compare
PP_5203 -1.2 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_4121 -1.2 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_3507 -1.2 -7.9 Aerobic cobaltochelatase subunit CobN compare
PP_2136 -1.2 -3.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4296 -1.2 -2.2 conserved exported protein of unknown function compare
PP_0122 -1.2 -1.2 conserved exported protein of unknown function compare
PP_5639 -1.2 -5.0 conserved exported protein of unknown function compare
PP_4693 -1.2 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_4131 -1.2 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_4830 -1.2 -4.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_0290 -1.2 -2.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2145 -1.2 -2.1 beta-N-acetylglucosaminidase compare
PP_1678 -1.2 -2.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1676 -1.2 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1493 -1.2 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4004 -1.1 -2.5 DNA translocase FtsK compare
PP_1675 -1.1 -5.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4098 -1.1 -2.2 UvrABC system protein C compare
PP_2302 -1.1 -3.5 DNA-binding, ATP-dependent protease compare
PP_0566 -1.1 -1.3 translation-related factor compare
PP_4058 -1.1 -5.1 1,4-alpha-glucan branching enzyme compare
PP_1304 -1.1 -6.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1681 -1.1 -6.3 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3539 -1.1 -3.3 putative Transcriptional regulator compare
PP_0366 -1.1 -3.4 dethiobiotin synthetase compare
PP_0962 -1.1 -1.8 toluene-tolerance protein compare
PP_3821 -1.1 -6.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4045 -1.1 -2.3 conserved protein of unknown function compare
PP_0339 -1.1 -0.7 Pyruvate dehydrogenase E1 component compare
PP_3411 -1.1 -1.9 conserved protein of unknown function compare
PP_1664 -1.1 -1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_4782 -1.1 -3.5 Phosphomethylpyrimidine kinase compare
PP_4827 -1.0 -5.6 Precorrin-2 C(20)-methyltransferase compare
PP_4263 -1.0 -3.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2228 -1.0 -4.0 putative K(+)/H(+) antiporter subunit D compare
PP_5311 -1.0 -5.6 putative signal transduction protein compare
PP_1677 -1.0 -4.0 Adenosyl-cobyric acid synthase compare
PP_2681 -1.0 -1.9 coenzyme PQQ synthesis protein D compare
PP_4724 -1.0 -0.7 Carbamoyl-phosphate synthase small chain compare
PP_1216 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4701 -1.0 -1.0 glucose-6-phosphate isomerase compare
PP_5202 -1.0 -1.3 putative cell division protein compare
PP_1679 -1.0 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2504 -1.0 -2.8 putative tautomerase K2 compare
PP_1208 -1.0 -1.8 conserved protein of unknown function, SlyX family compare
PP_4265 -1.0 -0.6 DNA-binding transcriptional dual regulator compare
PP_4560 -1.0 -1.8 putative Ribonuclease BN compare
PP_0855 -1.0 -2.0 conserved protein of unknown function compare
PP_0378 -0.9 -3.9 Pyrroloquinoline-quinone synthase compare
PP_4480 -0.9 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_1051 -0.9 -3.0 Type II secretion pathway protein XcpV compare
PP_t12 -0.9 -1.0 tRNA-Thr compare
PP_0434 -0.9 -3.0 Anhydro-N-acetylmuramic acid kinase compare
PP_0405 -0.9 -4.7 conserved protein of unknown function compare
PP_0628 -0.9 -2.2 conserved protein of unknown function compare
PP_2322 -0.9 -4.5 Major outer membrane lipoprotein compare
PP_3903 -0.9 -1.3 conserved protein of unknown function compare
PP_5216 -0.9 -1.2 exopolyphosphatase compare
PP_0789 -0.9 -2.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0340 -0.9 -7.1 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5145 -0.9 -7.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2309 -0.9 -1.3 conserved protein of unknown function compare
PP_2337 -0.9 -2.0 aconitate isomerase compare
PP_4910 -0.9 -1.8 conserved protein of unknown function compare
PP_2226 -0.9 -2.2 putative K(+)/H(+) antiporter subunit F compare
PP_0888 -0.9 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_3241 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4826 -0.9 -2.9 Precorrin-3B C17-methyltransferase compare
PP_0547 -0.9 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3245 -0.9 -1.7 conserved protein of unknown function compare
PP_1605 -0.9 -2.1 Ribonuclease HII compare
PP_4971 -0.8 -4.7 putative Outer membrane-bound lytic murein transglycolase A compare
PP_0948 -0.8 -1.4 Phosphocarrier protein HPr compare
PP_1719 -0.8 -4.4 Tail-specific protease prc compare
PP_1198 -0.8 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4697 -0.8 -2.1 poly(A) polymerase compare
PP_2725 -0.8 -2.8 Protease PfpI compare


Specific Phenotypes

For 5 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms