Experiment set20IT009 for Pseudomonas putida KT2440

Compare to:

Growth at pH8 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_5225 -5.3 -1.9 frataxin compare
PP_0292 -5.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -4.8 -7.4 tryptophan synthase beta chain compare
PP_4678 -4.7 -14.9 Ketol-acid reductoisomerase compare
PP_0422 -4.7 -5.8 Indole-3-glycerol phosphate synthase compare
PP_1995 -4.6 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5346 -4.6 -10.5 pyruvate carboxylase subunit B compare
PP_0967 -4.6 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2001 -4.6 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_2370 -4.5 -4.2 conserved protein of unknown function compare
PP_0290 -4.5 -7.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -4.4 -11.4 Histidinol dehydrogenase compare
PP_5015 -4.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0289 -4.4 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -4.3 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_1099 -4.3 -3.5 Cold shock protein CapB compare
PP_1079 -4.3 -7.6 Ornithine carbamoyltransferase compare
PP_1985 -4.3 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0164 -4.3 -6.5 conserved protein of unknown function compare
PP_4679 -4.3 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3484 -4.2 -5.7 Response regulator receiver protein compare
PP_5098 -4.2 -8.1 methionine biosynthesis protein MetW compare
PP_5128 -4.1 -7.3 Dihydroxy-acid dehydratase compare
PP_1025 -3.9 -13.0 2-isopropylmalate synthase compare
PP_2371 -3.9 -7.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5348 -3.9 -8.4 Transcriptional regulator, LysR family compare
PP_5347 -3.8 -11.3 pyruvate carboxylase subunit A compare
PP_3417 -3.8 -7.6 D-gluconate transporter compare
PP_5097 -3.8 -11.3 homoserine O-acetyltransferase compare
PP_4680 -3.7 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -3.7 -7.4 Branched-chain-amino-acid aminotransferase compare
PP_0417 -3.7 -15.1 Anthranilate synthase component 1 compare
PP_4364 -3.7 -4.0 putative Anti-sigma F factor antagonist compare
PP_5289 -3.7 -4.4 Acetylglutamate kinase compare
PP_5303 -3.4 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3999 -3.3 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -3.3 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1986 -3.3 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_4804 -3.3 -3.9 RlpA-like lipoprotein compare
PP_0184 -3.2 -5.8 Argininosuccinate lyase compare
PP_0293 -3.2 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5217 -3.1 -9.7 Polyphosphate kinase compare
PP_1988 -3.0 -7.3 3-isopropylmalate dehydrogenase compare
PP_5185 -3.0 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -3.0 -8.3 Argininosuccinate synthase compare
PP_2168 -3.0 -8.1 Transaldolase compare
PP_0421 -2.9 -6.2 Anthranilate phosphoribosyltransferase compare
PP_0291 -2.8 -3.4 conserved protein of unknown function compare
PP_2327 -2.8 -5.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1654 -2.8 -3.3 cysteine synthase B compare
PP_0365 -2.8 -7.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4696 -2.8 -6.2 Nitrogen regulation protein NR(I) compare
PP_3508 -2.8 -3.1 Protein CobW compare
PP_4909 -2.7 -6.1 phosphoserine phosphatase compare
PP_5014 -2.7 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4984 -2.6 -7.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0364 -2.6 -7.8 pimeloyl-[acp] methyl ester esterase compare
PP_1733 -2.6 -4.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_2145 -2.5 -4.4 beta-N-acetylglucosaminidase compare
PP_1022 -2.5 -6.2 glucose 6-phosphate-1-dehydrogenase compare
PP_1237 -2.4 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_0001 -2.4 -1.9 probable chromosome-partitioning protein compare
PP_4122 -2.4 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2337 -2.4 -4.2 aconitate isomerase compare
PP_2328 -2.4 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_5095 -2.4 -1.6 pyrroline-5-carboxylate reductase compare
PP_1231 -2.3 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0362 -2.3 -8.6 Biotin synthase compare
PP_0787 -2.3 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4964 -2.3 -4.5 D-erythrose 4-phosphate dehydrogenase compare
PP_0965 -2.2 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2070 -2.2 -2.6 Transcriptional regulator, AraC family compare
PP_5331 -2.1 -3.4 Long-chain acyl-CoA thioester hydrolase compare
PP_0630 -2.1 -1.5 DNA gyrase inhibitor YacG compare
PP_0363 -2.0 -7.3 8-amino-7-oxononanoate synthase compare
PP_4785 -1.9 -5.5 conserved exported protein of unknown function compare
PP_4830 -1.9 -4.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_1678 -1.9 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4994 -1.9 -4.3 conserved protein of unknown function compare
PP_1362 -1.9 -3.5 pyruvate kinase II compare
PP_2375 -1.8 -9.9 cobalamin-dependent methionine synthase compare
PP_1493 -1.8 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0366 -1.7 -3.2 dethiobiotin synthetase compare
PP_0065 -1.7 -2.8 NAD-binding component of TrK potassium transporter compare
PP_0593 -1.7 -1.2 putative ribosome-binding factor compare
PP_5017 -1.7 -1.3 Sec-independent protein translocase protein TatB compare
PP_5203 -1.7 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_2378 -1.7 -2.5 Fe/S biogenesis protein NfuA compare
PP_0735 -1.6 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5007 -1.6 -3.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2402 -1.6 -2.3 putative Sensor histidine kinase compare
PP_4977 -1.6 -6.5 5,10-methylenetetrahydrofolate reductase compare
PP_1912 -1.5 -4.5 Phosphate acyltransferase compare
PP_0420 -1.5 -4.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1304 -1.5 -6.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1672 -1.5 -3.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0959 -1.5 -1.8 phospholipid ABC transporter compare
PP_4329 -1.4 -3.0 FlhB domain protein compare
PP_1673 -1.4 -3.5 cobyrinate a,c-diamide synthase compare
PP_1303 -1.4 -5.2 Sulfate adenylyltransferase subunit 2 compare
PP_1216 -1.4 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4546 -1.4 -3.6 ATP-dependent helicase HrpA compare
PP_1898 -1.4 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4961 -1.4 -1.4 putative Lipoprotein compare
PP_1233 -1.4 -3.1 sulfurtransferase compare
PP_1568 -1.4 -1.4 conserved protein of unknown function compare
PP_4693 -1.4 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_4827 -1.4 -5.8 Precorrin-2 C(20)-methyltransferase compare
PP_1632 -1.3 -1.3 conserved protein of unknown function compare
PP_t11 -1.3 -2.4 tRNA-Lys compare
PP_5035 -1.3 -4.1 Histidine utilization repressor compare
PP_0653 -1.3 -1.4 conserved protein of unknown function compare
PP_5475 -1.3 -1.4 conserved protein of unknown function compare
PP_1906 -1.3 -2.7 ribosomal large subunit pseudouridine synthase C compare
PP_0393 -1.3 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4131 -1.2 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_1553 -1.2 -1.5 conserved protein of unknown function compare
PP_1637 -1.2 -4.1 Transcriptional regulator, LysR family compare
PP_4895 -1.2 -1.8 tRNA dimethylallyltransferase compare
PP_1681 -1.2 -6.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4993 -1.2 -3.2 Glutathione synthetase compare
PP_1734 -1.2 -2.4 Probable septum site-determining protein MinC compare
PP_4829 -1.2 -2.4 putative precorrin-3B synthase compare
PP_5350 -1.2 -2.6 Transcriptional regulator, RpiR family compare
PP_5104 -1.2 -4.6 thiazole synthase compare
PP_1656 -1.2 -4.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_5058 -1.1 -2.9 Carboxy-terminal-processing protease compare
PP_4379 -1.1 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3105 -1.1 -2.7 conserved membrane protein of unknown function compare
PP_0914 -1.1 -4.6 GGDEF domain protein compare
PP_4285 -1.1 -3.3 5-hydroxyisourate hydrolase compare
PP_2928 -1.1 -4.9 Saccharopine dehydrogenase compare
PP_5SB -1.1 -1.9 5S ribosomal RNA compare
PP_5508 -1.1 -1.2 conserved protein of unknown function compare
PP_4273 -1.1 -0.9 Transcriptional regulator, MerR family compare
PP_1676 -1.1 -2.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0725 -1.1 -2.7 conserved hypothetical TPR repeat protein compare
PP_1198 -1.1 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5735 -1.1 -2.0 conserved hypothetical protein compare
PP_4943 -1.0 -1.7 putative Glycosyl transferase compare
PP_5639 -1.0 -5.0 conserved exported protein of unknown function compare
PP_1679 -1.0 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4826 -1.0 -3.4 Precorrin-3B C17-methyltransferase compare
PP_1713 -1.0 -1.4 Transcriptional regulator PcaQ compare
PP_4296 -1.0 -1.4 conserved exported protein of unknown function compare
PP_1655 -1.0 -1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5500 -1.0 -1.6 protein of unknown function compare
PP_5248 -1.0 -1.0 putative hydrolase compare
PP_4832 -1.0 -2.7 Precorrin-6x reductase compare
PP_3323 -1.0 -2.9 CobW/P47K family protein compare
PP_1860 -1.0 -3.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_0962 -1.0 -1.9 toluene-tolerance protein compare
PP_4480 -1.0 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_1215 -1.0 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_1739 -1.0 -2.7 conserved membrane protein of unknown function compare
PP_t13 -1.0 -1.7 tRNA-Lys compare
PP_3507 -1.0 -5.4 Aerobic cobaltochelatase subunit CobN compare
PP_5090 -1.0 -0.9 putative cell division protein compare
PP_1664 -1.0 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3808 -1.0 -1.5 Antibiotic synthesis protein MbtH compare
PP_3509 -1.0 -1.8 Glyoxalase family protein compare
PP_1426 -1.0 -5.6 L-aspartate oxidase compare
PP_4406 -1.0 -1.2 conserved protein of unknown function compare
PP_2390 -1.0 -3.6 Transcriptional regulator, LysR family compare
PP_2898 -1.0 -1.6 conserved exported protein of unknown function compare
PP_1609 -1.0 -1.6 conserved protein of unknown function compare
PP_1675 -0.9 -3.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3880 -0.9 -1.3 conserved exported protein of unknown function compare
PP_2177 -0.9 -2.3 putative transcriptional regulator compare
PP_2388 -0.9 -2.6 Transporter, LysE family compare
PP_2442 -0.9 -1.8 conserved protein of unknown function, DUF480 family compare
PP_5471 -0.9 -0.7 putative response regulator receiver protein compare
PP_4129 -0.9 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4124 -0.9 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_2433 -0.9 -1.5 conserved protein of unknown function compare
PP_1012 -0.9 -3.6 DNA-binding response regulator compare
PP_4835 -0.9 -2.1 conserved exported protein of unknown function compare
PP_0232 -0.9 -1.0 ATP-binding taurine transporter subunit compare
PP_4701 -0.9 -0.8 glucose-6-phosphate isomerase compare
PP_1528 -0.9 -1.3 conserved protein of unknown function compare
PP_4098 -0.9 -1.6 UvrABC system protein C compare
PP_0138 -0.9 -4.7 conserved membrane protein of unknown function compare
PP_3392 -0.9 -1.2 conserved protein of unknown function compare
PP_2922 -0.9 -2.5 Urea amidolyase-related protein compare
PP_1011 -0.9 -4.3 glucokinase compare
PP_4880 -0.9 -4.3 exoribonuclease R compare
PP_0905 -0.9 -1.5 conserved exported protein of unknown function compare
PP_1770 -0.9 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5001 -0.8 -1.8 protease HslVU, ATPase component compare
PP_1994 -0.8 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_5000 -0.8 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_4936 -0.8 -3.3 O-antigen polymerase compare
PP_4782 -0.8 -2.5 Phosphomethylpyrimidine kinase compare
PP_5519 -0.8 -2.1 conserved protein of unknown function of phage origin compare
PP_3365 -0.8 -0.9 Acetolactate synthase compare
PP_4695 -0.8 -4.5 Sensory box histidine kinase compare
PP_3318 -0.8 -1.0 conserved protein of unknown function compare
PP_2511 -0.8 -2.6 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms