Experiment set20IT008 for Pseudomonas putida KT2440

Compare to:

Growth at pH8 and carbon source D-Glucose

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +2.0 12.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_5329 +1.8 4.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1186 +1.5 2.2 two component system DNA-binding transcriptional dual regulator compare
PP_2510 +1.4 3.0 conserved protein of unknown function compare
PP_4373 +1.4 12.1 Transcriptional regulator FleQ compare
PP_4136 +1.4 2.3 Transcriptional regulator, LuxR family compare
PP_2144 +1.4 4.3 Transcriptional regulator, TetR family compare
PP_0401 +1.4 2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_4337 +1.2 4.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1562 +1.2 3.2 putative Phage terminase, small subunit compare
PP_1001 +1.1 3.1 arginine deiminase compare
PP_5241 +1.1 1.8 DNA-binding response regulator, LuxR family compare
PP_3773 +1.1 3.3 conserved protein of unknown function compare
PP_0232 +1.1 1.9 ATP-binding taurine transporter subunit compare
PP_1812 +1.1 2.5 conserved protein of unknown function compare
PP_1544 +1.1 3.2 conserved protein of unknown function compare
PP_0630 +1.1 1.6 DNA gyrase inhibitor YacG compare
PP_1097 +1.1 1.9 Methionine--tRNA ligase compare
PP_3052 +1.0 1.6 conserved protein of unknown function compare
PP_4808 +1.0 1.5 23S rRNA m3psi1915 methyltransferase compare
PP_2889 +1.0 4.4 putative Transmembrane regulator PrtR compare
PP_2330 +1.0 2.7 conserved protein of unknown function compare
PP_1364 +1.0 6.5 conserved exported protein of unknown function compare
PP_1415 +1.0 3.9 putative membrane associated enzyme subunit compare
PP_4375 +1.0 5.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_1142 +1.0 1.3 conserved protein of unknown function compare
PP_1410 +1.0 1.1 conserved protein of unknown function compare
PP_5610 +1.0 2.0 protein of unknown function compare
PP_4367 +1.0 3.4 Flagellar assembly protein FliH compare
PP_0948 +1.0 1.9 Phosphocarrier protein HPr compare
PP_2655 +1.0 2.4 conserved protein of unknown function compare
PP_1113 +1.0 6.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0166 +0.9 7.2 HlyD family secretion protein compare
PP_4355 +0.9 2.6 flagellar export apparatus subunit compare
PP_2503 +0.9 2.2 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_3519 +0.9 1.3 putative Lipoprotein compare
PP_4342 +0.9 2.9 flagellar synthesis regulator, putative ATPase compare
PP_5053 +0.9 4.2 Protein-export protein SecB compare
PP_2700 +0.9 3.1 AhpC/TSA family protein compare
PP_0065 +0.9 2.4 NAD-binding component of TrK potassium transporter compare
PP_4569 +0.9 2.3 conserved protein of unknown function compare
PP_0274 +0.9 1.7 putative transcriptional regulator containing HTH domain compare
PP_0167 +0.9 7.6 Toxin secretion ATP-binding protein compare
PP_1763 +0.9 2.4 putative oxidoreductase compare
PP_0803 +0.9 4.9 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4353 +0.9 4.2 Flagellar biosynthetic protein fliR compare
PP_0191 +0.9 2.0 Transcriptional regulatory protein AlgQ compare
PP_3640 +0.9 2.1 Transcriptional regulator, AraC family compare
PP_4532 +0.9 1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4504 +0.8 1.9 conserved exported protein of unknown function compare
PP_5198 +0.8 1.9 conserved protein of unknown function compare
PP_4910 +0.8 1.8 conserved protein of unknown function compare
PP_3411 +0.8 1.7 conserved protein of unknown function compare
PP_0574 +0.8 5.8 DNA-binding response regulator, LuxR family compare
PP_2794 +0.8 1.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1224 +0.8 4.3 periplasmic subunit of the TolQRA transport system compare
PP_4904 +0.8 4.8 Flagellar motor rotation protein compare
PP_1005 +0.8 3.3 Heme oxygenase compare
PP_1404 +0.8 2.6 conserved protein of unknown function compare
PP_1766 +0.8 3.5 methylthioribose-1-phosphate isomerase compare
PP_2747 +0.8 1.5 conserved protein of unknown function compare
PP_5267 +0.8 2.2 putative cytochrome c5 compare
PP_5232 +0.8 2.3 conserved protein of unknown function compare
PP_3353 +0.8 2.8 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_5110 +0.8 1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3810 +0.8 2.2 conserved protein of unknown function compare
PP_2573 +0.8 3.8 conserved protein of unknown function compare
PP_4199 +0.8 1.1 putative Lipoprotein compare
PP_4365 +0.8 4.6 Flagellar protein FliJ compare
PP_2044 +0.8 1.8 conserved inner membrane protein of unknown function compare
PP_2360 +0.8 4.0 putative type 1 pili subunit CsuA/B protein compare
PP_5502 +0.8 1.8 ribosome modulation factor compare
PP_3043 +0.8 1.7 conserved protein of unknown function compare
PP_5666 +0.8 2.6 putative microcin B17-like processing protein, McbB family compare
PP_2716 +0.8 1.7 arsenate reductase compare
PP_1368 +0.8 1.9 putative membrane protein containing a glycosyltransferase domain compare
PP_5491 +0.8 1.8 conserved protein of unknown function with SEC-C motif domain compare
PP_0168 +0.8 6.6 putative surface adhesion protein compare
PP_4390 +0.8 4.2 flagellar basal-body rod protein FlgC compare
PP_2373 +0.7 1.8 conserved protein of unknown function compare
PP_4354 +0.7 2.1 flagellar export apparatus subunit compare
PP_4171 +0.7 5.9 conserved exported protein of unknown function compare
PP_2122 +0.7 1.7 molybdenum cofactor biosynthesis protein B compare
PP_0352 +0.7 2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4253 +0.7 1.1 cytochrome c oxidase subunit, cbb3-type compare
PP_4847 +0.7 1.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_1020 +0.7 1.4 putative glucose-6-phosphate 1-epimerase compare
PP_5477 +0.7 2.2 conserved protein of unknown function compare
PP_1503 +0.7 2.6 conserved protein of unknown function compare
PP_0633 +0.7 3.7 Type 4 fimbrial assembly protein PilC compare
PP_4394 +0.7 2.7 flagella basal body P-ring formation protein compare
PP_0512 +0.7 1.3 hypothetical protein compare
PP_2847 +0.7 1.1 Urease accessory protein UreJ compare
PP_4368 +0.7 3.7 flagellar motor switch protein compare
PP_4383 +0.7 3.0 Flagellar P-ring protein compare
PP_3185 +0.7 1.7 Pet18 protein compare
PP_3449 +0.7 1.1 conserved exported protein of unknown function compare
PP_0805 +0.7 4.5 Outer membrane efflux protein compare
PP_5594 +0.7 1.5 conserved protein of unknown function compare
PP_4519 +0.7 5.4 Agglutination protein compare
PP_4385 +0.7 2.9 flagellar basal-body rod protein FlgG compare
PP_4902 +0.7 1.0 Oligoribonuclease compare
PP_3447 +0.7 0.9 conserved membrane protein of unknown function compare
PP_2718 +0.7 1.0 arsenic resistance transcriptional regulator compare
PP_4008 +0.7 2.9 ATP-dependent serine protease compare
PP_0804 +0.7 3.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4366 +0.7 5.1 flagellum-specific ATP synthase compare
PP_3265 +0.7 1.1 putative phosphohydrolase of unknown function compare
PP_4358 +0.7 2.9 flagellar synthesis, switching and energizing component compare
PP_1112 +0.7 4.0 conserved membrane protein of unknown function compare
PP_4261 +0.7 2.8 cation-transporting P-type ATPase compare
PP_1428 +0.7 0.9 Sigma factor AlgU negative regulatory protein compare
PP_3726 +0.7 1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_0806 +0.7 5.9 putative Surface adhesion protein compare
PP_2306 +0.7 1.0 conserved exported protein of unknown function compare
PP_3487 +0.7 2.5 conserved exported protein of unknown function compare
PP_4378 +0.7 4.8 flagellin, filament structural protein compare
PP_0367 +0.7 2.9 conserved protein of unknown function compare
PP_3404 +0.6 1.9 conserved protein of unknown function compare
PP_1556 +0.6 1.1 conserved protein of unknown function compare
PP_5358 +0.6 3.4 conserved protein of unknown function compare
PP_1267 +0.6 3.1 toxin endoribonuclease of toxin antitoxin system SohB(PrlF)-YhaV compare
PP_3808 +0.6 1.5 Antibiotic synthesis protein MbtH compare
PP_2232 +0.6 2.1 XRE family transcriptional regulator compare
PP_4352 +0.6 4.5 flagellin export apparatus, substrate specificity protein compare
PP_3415 +0.6 3.1 Transcriptional regulator, LacI family compare
PP_5051 +0.6 1.2 conserved protein of unknown function compare
PP_4380 +0.6 4.7 Flagellar hook-associated protein FlgL compare
PP_2318 +0.6 2.5 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_3307 +0.6 1.2 conserved protein of unknown function compare
PP_1892 +0.6 1.3 conserved protein of unknown function compare
PP_4382 +0.6 3.7 Peptidoglycan hydrolase FlgJ compare
PP_1442 +0.6 1.1 conserved protein of unknown function compare
PP_0062 +0.6 1.9 3-methyl-adenine DNA glycosylase I compare
PP_2526 +0.6 1.7 conserved membrane protein of unknown function compare
PP_0094 +0.6 2.3 5'-nucleotidase compare
PP_4143 +0.6 2.8 conserved protein of unknown function compare
PP_3094 +0.6 1.4 conserved exported protein of unknown function compare
PP_3481 +0.6 1.2 conserved exported protein of unknown function compare
PP_1867 +0.6 2.5 conserved protein of unknown function compare
PP_4528 +0.6 0.9 conserved protein of unknown function compare
PP_5499 +0.6 2.2 conserved protein of unknown function compare
PP_4396 +0.6 2.0 conserved protein of unknown function compare
PP_1319 +0.6 2.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4391 +0.6 2.2 flagellar basal-body rod protein FlgB compare
PP_4545 +0.6 2.2 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_2331 +0.6 2.2 conserved membrane protein of unknown function compare
PP_1045 +0.6 0.5 Type II secretion pathway protein XcpP compare
PP_1987 +0.6 1.4 Methlytransferase, UbiE/COQ5 family compare
PP_2999 +0.6 1.0 Glyoxalase family protein compare
PP_1635 +0.6 2.1 DNA-binding response regulator compare
PP_0855 +0.6 1.1 conserved protein of unknown function compare
PP_4341 +0.6 3.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0903 +0.6 1.4 conserved protein of unknown function compare
PP_3040 +0.6 2.3 Pyocin R2_PP, holin compare
PP_5084 +0.6 3.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0194 +0.6 1.5 Transcriptional regulatory protein AlgP compare
PP_3400 +0.6 1.9 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_0762 +0.6 1.4 Glycerate dehydrogenase compare
PP_4006 +0.6 3.5 Putative arginyl-tRNA--protein transferase compare
PP_3145 +0.6 3.3 conserved protein of unknown function compare
PP_5541 +0.6 1.8 conserved protein of unknown function compare
PP_2342 +0.6 2.1 conserved protein of unknown function compare
PP_2616 +0.6 1.4 conserved protein of unknown function compare
PP_2575 +0.6 1.2 conserved exported protein of unknown function compare
PP_2054 +0.6 1.2 putative DNA-binding transcriptional regulator compare
PP_3757 +0.6 1.5 Chemotaxis protein CheY compare
PP_5133 +0.6 2.3 conserved membrane protein of unknown function compare
PP_4946 +0.6 2.8 sodium/L-proline transporter compare
PP_4344 +0.6 3.4 flagellar export pore protein compare
PP_2323 +0.6 2.7 conserved protein of unknown function compare
PP_1650 +0.6 5.1 Sensor protein GacS compare
PP_2028 +0.6 1.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3434 +0.6 1.0 conserved protein of unknown function compare
PP_0999 +0.6 1.4 carbamate kinase compare
PP_3766 +0.6 1.3 Lactoylglutathione lyase compare
PP_3018 +0.6 1.6 conserved protein of unknown function compare
PP_4581 +0.6 1.5 putative amidotransferase compare
PP_1087 +0.5 3.5 Outer membrane protein, OmpA family compare
PP_2132 +0.5 1.3 Universal stress protein compare
PP_0400 +0.5 2.3 CO2+/MG2+ efflux protein compare
PP_3286 +0.5 2.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0414 +0.5 3.3 Polyamine ABC transporter, permease protein compare
PP_4384 +0.5 3.2 Flagellar L-ring protein compare
PP_0165 +0.5 4.1 GGDEF domain protein compare
PP_5085 +0.5 2.6 malic enzyme B compare
PP_4957 +0.5 2.1 conserved protein of unknown function compare
PP_5225 +0.5 0.9 frataxin compare
PP_1265 +0.5 1.8 conserved protein of unknown function compare
PP_3902 +0.5 1.0 conserved protein of unknown function compare
PP_3608 +0.5 2.8 Transcriptional regulator, LysR family compare
PP_2408 +0.5 1.9 cobalt-zinc-cadmium resistance protein compare
PP_4057 +0.5 2.3 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_3823 +0.5 1.6 Cytochrome c-type protein compare
PP_0781 +0.5 1.8 conserved protein of unknown function compare
PP_2694 +0.5 2.4 Aldehyde dehydrogenase family protein compare
PP_4386 +0.5 2.2 flagellar basal-body rod protein FlgF compare
PP_5705 +0.5 0.9 protein of unknown function compare
PP_0921 +0.5 1.4 Transcriptional regulator, ArsR family compare
PP_4499 +0.5 1.8 putative maturation enzyme compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms