Experiment set20IT007 for Pseudomonas putida KT2440

Compare to:

Growth at pH8 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1986 -6.0 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_0422 -5.2 -5.0 Indole-3-glycerol phosphate synthase compare
PP_5014 -4.9 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_0083 -4.4 -9.8 tryptophan synthase beta chain compare
PP_2001 -4.3 -9.7 O-succinylhomoserine sulfhydrylase compare
PP_5348 -4.2 -7.9 Transcriptional regulator, LysR family compare
PP_5155 -4.1 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4804 -4.1 -2.8 RlpA-like lipoprotein compare
PP_5289 -4.0 -4.8 Acetylglutamate kinase compare
PP_2168 -4.0 -9.3 Transaldolase compare
PP_0965 -3.9 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0967 -3.9 -8.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -3.8 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -3.7 -5.3 Ornithine carbamoyltransferase compare
PP_2371 -3.7 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4678 -3.7 -10.9 Ketol-acid reductoisomerase compare
PP_5097 -3.6 -9.7 homoserine O-acetyltransferase compare
PP_5098 -3.6 -6.3 methionine biosynthesis protein MetW compare
PP_1898 -3.6 -5.0 MotA/TolQ/ExbB proton channel family protein compare
PP_5347 -3.5 -8.4 pyruvate carboxylase subunit A compare
PP_0966 -3.5 -7.3 Histidinol dehydrogenase compare
PP_2327 -3.5 -7.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -3.5 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -3.5 -7.1 Argininosuccinate lyase compare
PP_0289 -3.4 -6.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0164 -3.3 -6.1 conserved protein of unknown function compare
PP_0417 -3.2 -11.5 Anthranilate synthase component 1 compare
PP_5185 -3.1 -4.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -3.0 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -3.0 -6.2 3-isopropylmalate dehydrogenase compare
PP_4890 -3.0 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0787 -2.9 -2.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -2.8 -5.6 Anthranilate phosphoribosyltransferase compare
PP_3511 -2.8 -5.4 Branched-chain-amino-acid aminotransferase compare
PP_5217 -2.7 -7.3 Polyphosphate kinase compare
PP_4909 -2.7 -6.7 phosphoserine phosphatase compare
PP_4679 -2.7 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5007 -2.7 -3.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5303 -2.7 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2328 -2.7 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_1995 -2.7 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2370 -2.6 -2.6 conserved protein of unknown function compare
PP_1985 -2.6 -3.4 3-isopropylmalate dehydratase large subunit compare
PP_4828 -2.5 -1.8 Precorrin-8X methylmutase compare
PP_4984 -2.5 -6.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_4785 -2.5 -5.9 conserved exported protein of unknown function compare
PP_1088 -2.5 -7.0 Argininosuccinate synthase compare
PP_5346 -2.5 -5.5 pyruvate carboxylase subunit B compare
PP_5095 -2.4 -1.5 pyrroline-5-carboxylate reductase compare
PP_0364 -2.4 -5.6 pimeloyl-[acp] methyl ester esterase compare
PP_0291 -2.3 -3.2 conserved protein of unknown function compare
PP_2044 -2.3 -2.4 conserved inner membrane protein of unknown function compare
PP_3484 -2.3 -4.5 Response regulator receiver protein compare
PP_1025 -2.2 -7.6 2-isopropylmalate synthase compare
PP_0420 -2.2 -5.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1122 -2.2 -2.1 OmpA family protein compare
PP_2088 -2.1 -2.8 RNA polymerase sigma factor SigX compare
PP_5128 -2.1 -4.9 Dihydroxy-acid dehydratase compare
PP_1022 -2.1 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_0363 -2.1 -7.4 8-amino-7-oxononanoate synthase compare
PP_1231 -2.1 -4.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4832 -2.0 -4.0 Precorrin-6x reductase compare
PP_2883 -2.0 -1.5 conserved protein of unknown function compare
PP_4120 -2.0 -3.7 NADH-quinone oxidoreductase subunit B compare
PP_4994 -1.9 -3.4 conserved protein of unknown function compare
PP_4126 -1.9 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_0362 -1.9 -6.9 Biotin synthase compare
PP_4561 -1.9 -1.2 stress response protein compare
PP_1493 -1.8 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5203 -1.8 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_4546 -1.8 -3.9 ATP-dependent helicase HrpA compare
PP_1233 -1.8 -2.4 sulfurtransferase compare
PP_2402 -1.8 -2.4 putative Sensor histidine kinase compare
PP_1654 -1.8 -3.1 cysteine synthase B compare
PP_5015 -1.8 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3105 -1.8 -2.6 conserved membrane protein of unknown function compare
PP_4693 -1.7 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_4964 -1.7 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5022 -1.7 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_4977 -1.7 -5.3 5,10-methylenetetrahydrofolate reductase compare
PP_4004 -1.7 -2.9 DNA translocase FtsK compare
PP_0914 -1.7 -5.0 GGDEF domain protein compare
PP_0365 -1.7 -4.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3505 -1.7 -1.3 conserved protein of unknown function compare
PP_5310 -1.7 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_2378 -1.7 -2.2 Fe/S biogenesis protein NfuA compare
PP_3519 -1.6 -1.2 putative Lipoprotein compare
PP_3398 -1.6 -2.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1664 -1.6 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4364 -1.6 -2.4 putative Anti-sigma F factor antagonist compare
PP_1310 -1.6 -2.1 conserved hypothetical protein compare
PP_4268 -1.6 -1.3 nucleoid-associated broad specificity regulator compare
PP_3417 -1.5 -4.0 D-gluconate transporter compare
PP_1362 -1.5 -2.2 pyruvate kinase II compare
PP_0366 -1.5 -4.0 dethiobiotin synthetase compare
PP_4010 -1.5 -3.0 DNA replication inhibitor compare
PP_0888 -1.5 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_4895 -1.5 -2.2 tRNA dimethylallyltransferase compare
PP_1679 -1.4 -2.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1303 -1.4 -3.8 Sulfate adenylyltransferase subunit 2 compare
PP_1677 -1.4 -4.0 Adenosyl-cobyric acid synthase compare
PP_3840 -1.4 -1.4 conserved protein of unknown function compare
PP_2503 -1.4 -1.9 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_1681 -1.4 -5.6 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3506 -1.3 -2.6 Magnesium chelatase, subunit ChII compare
PP_3035 -1.3 -2.3 conserved protein of unknown function compare
PP_2899 -1.3 -1.6 conserved exported protein of unknown function compare
PP_1673 -1.3 -2.9 cobyrinate a,c-diamide synthase compare
PP_1656 -1.3 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_3110 -1.3 -2.3 protein of unknown function compare
PP_0547 -1.3 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1426 -1.3 -5.9 L-aspartate oxidase compare
PP_1366 -1.3 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_4782 -1.2 -2.9 Phosphomethylpyrimidine kinase compare
PP_2756 -1.2 -1.9 conserved protein of unknown function compare
PP_2900 -1.2 -2.1 conserved protein of unknown function compare
PP_1733 -1.2 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_3508 -1.2 -2.4 Protein CobW compare
PP_4797 -1.2 -1.6 conserved protein of unknown function compare
PP_1328 -1.2 -1.1 Protein MraZ compare
PP_1237 -1.2 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4133 -1.2 -2.0 Transcriptional regulator-related protein compare
PP_0206 -1.2 -1.9 Ferredoxin, 4Fe-4S compare
PP_1770 -1.2 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0592 -1.2 -5.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2375 -1.1 -6.0 cobalamin-dependent methionine synthase compare
PP_4699 -1.1 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4480 -1.1 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_5027 -1.1 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_3056 -1.1 -2.7 putative Pyocin R2_PP, tail fiber protein compare
PP_4701 -1.1 -0.9 glucose-6-phosphate isomerase compare
PP_2929 -1.1 -4.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5093 -1.1 -0.9 twitching motility protein compare
PP_1208 -1.1 -1.4 conserved protein of unknown function, SlyX family compare
PP_5639 -1.1 -4.0 conserved exported protein of unknown function compare
PP_1304 -1.1 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4726 -1.1 -1.4 Chaperone protein DnaJ compare
PP_2414 -1.1 -1.0 conserved exported protein of unknown function compare
PP_1041 -1.0 -1.0 twin arginine protein export complex subunit compare
PP_2700 -1.0 -2.1 AhpC/TSA family protein compare
PP_2016 -1.0 -1.6 conserved protein of unknown function compare
PP_4902 -1.0 -1.5 Oligoribonuclease compare
PP_4880 -1.0 -4.5 exoribonuclease R compare
PP_2510 -1.0 -1.2 conserved protein of unknown function compare
PP_0138 -1.0 -4.4 conserved membrane protein of unknown function compare
PP_5451 -1.0 -1.8 protein of unknown function compare
PP_2846 -1.0 -2.0 urease accessory protein compare
PP_1346 -1.0 -3.0 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0556 -1.0 -2.0 Acetoin catabolism protein compare
PP_3946 -1.0 -0.7 HTH-type transcriptional repressor NicR compare
PP_1216 -1.0 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2337 -1.0 -2.2 aconitate isomerase compare
PP_1479 -1.0 -3.1 HicB protein compare
PP_1845 -1.0 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_4830 -1.0 -2.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_3374 -1.0 -2.8 conserved protein of unknown function compare
PP_1860 -1.0 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_0126 -1.0 -1.4 Cytochrome c4 compare
PP_3407 -0.9 -2.4 conserved protein of unknown function compare
PP_4143 -0.9 -2.5 conserved protein of unknown function compare
PP_4124 -0.9 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_1142 -0.9 -0.8 conserved protein of unknown function compare
PP_1655 -0.9 -1.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4121 -0.9 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_2878 -0.9 -1.5 conserved protein of unknown function compare
PP_1783 -0.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_0065 -0.9 -1.5 NAD-binding component of TrK potassium transporter compare
PP_1994 -0.9 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_1675 -0.9 -3.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5393 -0.9 -1.0 putative metal-binding chaperone compare
PP_5661 -0.9 -2.5 putative lipoprotein compare
PP_t29 -0.9 -1.0 tRNA-Ala compare
PP_0152 -0.9 -1.1 conserved exported protein of unknown function compare
PP_4936 -0.9 -3.8 O-antigen polymerase compare
PP_2511 -0.9 -1.7 conserved protein of unknown function compare
PP_3507 -0.9 -5.0 Aerobic cobaltochelatase subunit CobN compare
PP_4362 -0.9 -2.2 conserved protein of unknown function compare
PP_0114 -0.9 -2.8 methionine ABC transporter ATP-binding protein compare
PP_2530 -0.9 -1.3 conserved protein of unknown function compare
PP_3378 -0.9 -1.7 putative 2-ketogluconokinase compare
PP_1734 -0.9 -1.9 Probable septum site-determining protein MinC compare
PP_2661 -0.9 -2.1 conserved protein of unknown function compare
PP_0703 -0.9 -2.2 putative Transmembrane sensor compare
PP_1217 -0.9 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1605 -0.9 -1.7 Ribonuclease HII compare
PP_4249 -0.9 -2.9 conserved protein of unknown function compare
PP_4316 -0.9 -2.5 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_4824 -0.9 -3.0 Sensor histidine kinase/response regulator compare
PP_0393 -0.9 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4827 -0.9 -4.1 Precorrin-2 C(20)-methyltransferase compare
PP_0405 -0.9 -3.9 conserved protein of unknown function compare
PP_3211 -0.9 -1.6 ABC transporter, ATP-binding protein compare
PP_0063 -0.9 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0673 -0.9 -1.2 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms