Experiment set20IT006 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_5075 -5.3 -16.7 glutamate synthase (NADPH) beta subunit compare
PP_0082 -5.0 -8.4 tryptophan synthase alpha chain compare
PP_2370 -5.0 -4.8 conserved protein of unknown function compare
PP_0290 -5.0 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.4 -10.3 tryptophan synthase beta chain compare
PP_5076 -4.4 -17.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_2371 -4.4 -8.4 Sulphite reductase hemoprotein, beta subunit compare
PP_1898 -4.1 -4.8 MotA/TolQ/ExbB proton channel family protein compare
PP_5014 -4.1 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_1988 -4.1 -8.6 3-isopropylmalate dehydrogenase compare
PP_3999 -4.0 -8.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1985 -3.8 -5.6 3-isopropylmalate dehydratase large subunit compare
PP_5097 -3.8 -12.0 homoserine O-acetyltransferase compare
PP_4909 -3.7 -8.3 phosphoserine phosphatase compare
PP_4696 -3.6 -7.4 Nitrogen regulation protein NR(I) compare
PP_1986 -3.5 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_1079 -3.5 -5.9 Ornithine carbamoyltransferase compare
PP_0293 -3.4 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5347 -3.4 -9.1 pyruvate carboxylase subunit A compare
PP_2327 -3.4 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -3.3 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -3.2 -3.9 Acetylglutamate kinase compare
PP_0292 -3.2 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5098 -3.1 -5.8 methionine biosynthesis protein MetW compare
PP_4680 -3.1 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -2.9 -9.1 Histidinol dehydrogenase compare
PP_4785 -2.9 -6.0 conserved exported protein of unknown function compare
PP_0289 -2.9 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -2.9 -9.0 Transaldolase compare
PP_5185 -2.9 -7.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -2.9 -10.1 Ketol-acid reductoisomerase compare
PP_4994 -2.9 -4.1 conserved protein of unknown function compare
PP_0967 -2.9 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4679 -2.9 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -2.9 -7.7 pyruvate carboxylase subunit B compare
PP_4829 -2.8 -5.9 putative precorrin-3B synthase compare
PP_2001 -2.8 -8.6 O-succinylhomoserine sulfhydrylase compare
PP_4890 -2.8 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -2.7 -8.1 Dihydroxy-acid dehydratase compare
PP_0420 -2.7 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1231 -2.7 -7.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -2.7 -1.9 pantothenate synthetase compare
PP_1995 -2.7 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0965 -2.7 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4122 -2.7 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_0184 -2.6 -6.2 Argininosuccinate lyase compare
PP_1088 -2.6 -9.3 Argininosuccinate synthase compare
PP_5303 -2.5 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1025 -2.5 -9.6 2-isopropylmalate synthase compare
PP_3511 -2.4 -5.4 Branched-chain-amino-acid aminotransferase compare
PP_0421 -2.3 -5.7 Anthranilate phosphoribosyltransferase compare
PP_5348 -2.3 -6.0 Transcriptional regulator, LysR family compare
PP_0422 -2.3 -5.7 Indole-3-glycerol phosphate synthase compare
PP_1664 -2.2 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_4693 -2.1 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_t29 -2.0 -3.0 tRNA-Ala compare
PP_0417 -2.0 -10.5 Anthranilate synthase component 1 compare
PP_1022 -2.0 -4.8 glucose 6-phosphate-1-dehydrogenase compare
PP_1654 -2.0 -3.8 cysteine synthase B compare
PP_5015 -1.9 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0362 -1.9 -7.8 Biotin synthase compare
PP_2328 -1.9 -3.8 Phosphoadenosine phosphosulfate reductase compare
PP_4804 -1.9 -3.4 RlpA-like lipoprotein compare
PP_0719 -1.9 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2378 -1.8 -2.5 Fe/S biogenesis protein NfuA compare
PP_0291 -1.8 -1.7 conserved protein of unknown function compare
PP_3411 -1.8 -2.1 conserved protein of unknown function compare
PP_0787 -1.7 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0725 -1.7 -5.0 conserved hypothetical TPR repeat protein compare
PP_2375 -1.7 -8.9 cobalamin-dependent methionine synthase compare
PP_4121 -1.7 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_3365 -1.7 -1.5 Acetolactate synthase compare
PP_1912 -1.6 -4.5 Phosphate acyltransferase compare
PP_4964 -1.6 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5028 -1.6 -3.4 proline iminopeptidase compare
PP_3508 -1.6 -3.2 Protein CobW compare
PP_1673 -1.6 -4.1 cobyrinate a,c-diamide synthase compare
PP_4546 -1.5 -4.0 ATP-dependent helicase HrpA compare
PP_2681 -1.5 -2.3 coenzyme PQQ synthesis protein D compare
PP_5217 -1.5 -6.0 Polyphosphate kinase compare
PP_1681 -1.5 -6.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3245 -1.5 -2.0 conserved protein of unknown function compare
PP_1428 -1.5 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_5203 -1.4 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_1678 -1.4 -4.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1672 -1.4 -4.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4977 -1.4 -6.0 5,10-methylenetetrahydrofolate reductase compare
PP_4832 -1.4 -2.9 Precorrin-6x reductase compare
PP_1426 -1.4 -7.4 L-aspartate oxidase compare
PP_0364 -1.4 -6.4 pimeloyl-[acp] methyl ester esterase compare
PP_0547 -1.4 -3.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2880 -1.3 -2.5 Transcriptional regulator, TetR family compare
PP_4828 -1.3 -1.5 Precorrin-8X methylmutase compare
PP_4984 -1.3 -5.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1733 -1.3 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0365 -1.3 -5.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1764 -1.3 -2.4 Phosphoglycolate phosphatase 2 compare
PP_2137 -1.3 -1.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_1011 -1.3 -6.1 glucokinase compare
PP_1679 -1.3 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4824 -1.3 -5.1 Sensor histidine kinase/response regulator compare
PP_3506 -1.2 -2.5 Magnesium chelatase, subunit ChII compare
PP_1110 -1.2 -2.1 serine acetyltransferase compare
PP_3507 -1.2 -6.8 Aerobic cobaltochelatase subunit CobN compare
PP_1675 -1.2 -5.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1826 -1.2 -2.3 Hydrolase, isochorismatase family compare
PP_5202 -1.2 -2.1 putative cell division protein compare
PP_0393 -1.2 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4480 -1.1 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_1656 -1.1 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1362 -1.1 -1.8 pyruvate kinase II compare
PP_3821 -1.1 -5.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0405 -1.1 -5.4 conserved protein of unknown function compare
PP_5026 -1.1 -5.2 Glucans biosynthesis protein G compare
PP_1677 -1.1 -3.9 Adenosyl-cobyric acid synthase compare
PP_4120 -1.1 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_2402 -1.1 -1.5 putative Sensor histidine kinase compare
PP_2140 -1.1 -3.8 conserved protein of unknown function compare
PP_0363 -1.1 -5.4 8-amino-7-oxononanoate synthase compare
PP_1938 -1.1 -2.0 conserved protein of unknown function compare
PP_5232 -1.1 -1.8 conserved protein of unknown function compare
PP_5104 -1.1 -4.4 thiazole synthase compare
PP_5310 -1.0 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_5350 -1.0 -2.3 Transcriptional regulator, RpiR family compare
PP_0846 -1.0 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_4830 -1.0 -3.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_0938 -1.0 -5.2 conserved protein of unknown function compare
PP_1366 -1.0 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_3726 -1.0 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_1655 -1.0 -2.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0378 -1.0 -4.6 Pyrroloquinoline-quinone synthase compare
PP_1589 -1.0 -4.8 uridylyltransferase compare
PP_0735 -1.0 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_1860 -1.0 -3.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_4204 -1.0 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4910 -1.0 -1.0 conserved protein of unknown function compare
PP_3409 -1.0 -1.8 putative Cobalamin biosynthesis protein cobE compare
PP_0246 -1.0 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_4827 -1.0 -5.1 Precorrin-2 C(20)-methyltransferase compare
PP_0151 -1.0 -1.7 conserved exported protein of unknown function compare
PP_1553 -0.9 -0.8 conserved protein of unknown function compare
PP_1293 -0.9 -1.3 molybdopterin synthase small subunit compare
PP_4826 -0.9 -3.0 Precorrin-3B C17-methyltransferase compare
PP_0366 -0.9 -3.5 dethiobiotin synthetase compare
PP_4356 -0.9 -2.4 Flagellar protein FliO compare
PP_3449 -0.9 -1.9 conserved exported protein of unknown function compare
PP_1109 -0.9 -6.3 Transcriptional regulator, GntR family compare
PP_1355 -0.9 -4.4 Muropeptide permease AmpG compare
PP_1111 -0.9 -3.3 putative Synthetase compare
PP_4131 -0.9 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_2756 -0.9 -2.0 conserved protein of unknown function compare
PP_5025 -0.9 -4.7 Glucans biosynthesis glucosyltransferase H compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4263 -0.9 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5SB -0.9 -2.7 5S ribosomal RNA compare
PP_0138 -0.9 -5.9 conserved membrane protein of unknown function compare
PP_2341 -0.9 -1.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0789 -0.9 -2.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3730 -0.9 -1.6 Transcriptional regulatory protein AruR compare
PP_2764 -0.9 -2.4 FMN reductase (NADPH) compare
PP_5546 -0.9 -1.8 conserved protein of unknown function compare
PP_4477 -0.9 -3.2 N-succinylarginine dihydrolase compare
PP_1304 -0.9 -4.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2631 -0.9 -1.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2999 -0.9 -1.1 Glyoxalase family protein compare
PP_4874 -0.9 -1.0 50S ribosomal protein L9 compare
PP_2032 -0.9 -3.1 putative ATPase compare
PP_2388 -0.9 -1.5 Transporter, LysE family compare
PP_1729 -0.9 -1.5 conserved protein of unknown function compare
PP_2087 -0.9 -2.0 CmpX protein compare
PP_5639 -0.8 -3.7 conserved exported protein of unknown function compare
PP_1303 -0.8 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_1528 -0.8 -0.9 conserved protein of unknown function compare
PP_2187 -0.8 -2.9 Universal stress protein family compare
PP_3417 -0.8 -2.0 D-gluconate transporter compare
PP_4268 -0.8 -1.1 nucleoid-associated broad specificity regulator compare
PP_1739 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_1454 -0.8 -1.9 conserved protein of unknown function compare
PP_0406 -0.8 -1.5 Nucleotidyltransferase family protein compare
PP_2390 -0.8 -3.0 Transcriptional regulator, LysR family compare
PP_3434 -0.8 -1.7 conserved protein of unknown function compare
PP_3946 -0.8 -1.2 HTH-type transcriptional repressor NicR compare
PP_1566 -0.8 -2.4 Peptidase U35 compare
PP_4782 -0.8 -2.3 Phosphomethylpyrimidine kinase compare
PP_1233 -0.8 -2.5 sulfurtransferase compare
PP_3790 -0.8 -3.6 diaminopimelate epimerase compare
PP_4699 -0.8 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4481 -0.8 -4.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5248 -0.8 -1.1 putative hydrolase compare
PP_2129 -0.8 -2.8 conserved protein of unknown function compare
PP_1018 -0.8 -3.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_2929 -0.8 -4.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2336 -0.8 -2.3 aconitate hydratase 1 compare
PP_4066 -0.8 -1.8 methylglutaconyl-CoA hydratase compare
PP_4126 -0.8 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_1124 -0.8 -2.1 conserved membrane protein of unknown function compare
PP_2088 -0.8 -1.5 RNA polymerase sigma factor SigX compare
PP_3649 -0.8 -1.7 Transcriptional regulator, GntR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms