Experiment set20IT005 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_2371 -5.7 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0293 -4.7 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0083 -4.6 -8.2 tryptophan synthase beta chain compare
PP_5075 -4.6 -13.3 glutamate synthase (NADPH) beta subunit compare
PP_0292 -4.5 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.5 -8.7 tryptophan synthase alpha chain compare
PP_1988 -4.3 -8.1 3-isopropylmalate dehydrogenase compare
PP_2402 -4.2 -2.8 putative Sensor histidine kinase compare
PP_1898 -4.1 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5155 -4.0 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4678 -4.0 -12.3 Ketol-acid reductoisomerase compare
PP_4122 -4.0 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4696 -4.0 -7.1 Nitrogen regulation protein NR(I) compare
PP_5097 -4.0 -11.9 homoserine O-acetyltransferase compare
PP_4679 -4.0 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5076 -3.9 -16.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_0967 -3.8 -8.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5347 -3.8 -10.5 pyruvate carboxylase subunit A compare
PP_0290 -3.7 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5015 -3.7 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -3.7 -7.7 Branched-chain-amino-acid aminotransferase compare
PP_3999 -3.7 -8.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4680 -3.6 -12.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.6 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -3.6 -10.5 Transaldolase compare
PP_1654 -3.5 -3.4 cysteine synthase B compare
PP_2001 -3.4 -7.9 O-succinylhomoserine sulfhydrylase compare
PP_5289 -3.4 -4.2 Acetylglutamate kinase compare
PP_5346 -3.4 -7.7 pyruvate carboxylase subunit B compare
PP_4994 -3.4 -4.9 conserved protein of unknown function compare
PP_5098 -3.4 -7.9 methionine biosynthesis protein MetW compare
PP_1025 -3.3 -10.7 2-isopropylmalate synthase compare
PP_0966 -3.3 -8.2 Histidinol dehydrogenase compare
PP_1079 -3.3 -4.3 Ornithine carbamoyltransferase compare
PP_4804 -3.3 -4.5 RlpA-like lipoprotein compare
PP_0965 -3.3 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4874 -3.2 -2.2 50S ribosomal protein L9 compare
PP_2378 -3.2 -3.7 Fe/S biogenesis protein NfuA compare
PP_1995 -3.1 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5128 -3.1 -5.8 Dihydroxy-acid dehydratase compare
PP_0184 -3.1 -6.0 Argininosuccinate lyase compare
PP_2370 -3.1 -5.3 conserved protein of unknown function compare
PP_4785 -3.0 -5.6 conserved exported protein of unknown function compare
PP_1088 -3.0 -8.8 Argininosuccinate synthase compare
PP_2327 -3.0 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5014 -3.0 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -2.9 -6.9 Anthranilate phosphoribosyltransferase compare
PP_5185 -2.9 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -2.9 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_5303 -2.8 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1985 -2.8 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_1022 -2.8 -6.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0422 -2.7 -4.3 Indole-3-glycerol phosphate synthase compare
PP_4909 -2.7 -6.9 phosphoserine phosphatase compare
PP_2328 -2.7 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_4890 -2.7 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_0420 -2.4 -7.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5348 -2.4 -5.7 Transcriptional regulator, LysR family compare
PP_5248 -2.3 -1.1 putative hydrolase compare
PP_0362 -2.3 -9.0 Biotin synthase compare
PP_0417 -2.2 -11.3 Anthranilate synthase component 1 compare
PP_1231 -2.0 -4.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1362 -2.0 -4.3 pyruvate kinase II compare
PP_0291 -1.9 -2.5 conserved protein of unknown function compare
PP_4700 -1.9 -2.8 pantothenate synthetase compare
PP_0001 -1.9 -2.4 probable chromosome-partitioning protein compare
PP_1673 -1.8 -5.8 cobyrinate a,c-diamide synthase compare
PP_0627 -1.8 -2.8 conserved protein of unknown function compare
PP_3505 -1.8 -2.5 conserved protein of unknown function compare
PP_4977 -1.8 -6.6 5,10-methylenetetrahydrofolate reductase compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4120 -1.7 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_0787 -1.7 -4.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1353 -1.7 -3.4 conserved membrane protein of unknown function compare
PP_0962 -1.6 -1.7 toluene-tolerance protein compare
PP_2302 -1.6 -4.8 DNA-binding, ATP-dependent protease compare
PP_4546 -1.6 -4.0 ATP-dependent helicase HrpA compare
PP_5203 -1.6 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_1055 -1.5 -1.5 Type II secretion pathway protein GspN compare
PP_1675 -1.5 -5.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4902 -1.5 -1.7 Oligoribonuclease compare
PP_3508 -1.5 -5.2 Protein CobW compare
PP_4126 -1.5 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_1656 -1.5 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_0547 -1.5 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3241 -1.5 -1.6 conserved exported protein of unknown function compare
PP_1783 -1.5 -1.9 dTDP-glucose pyrophosphorylase compare
PP_1678 -1.5 -1.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5217 -1.5 -6.6 Polyphosphate kinase compare
PP_2388 -1.5 -2.8 Transporter, LysE family compare
PP_0364 -1.5 -5.7 pimeloyl-[acp] methyl ester esterase compare
PP_4532 -1.4 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1664 -1.4 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_5267 -1.4 -2.3 putative cytochrome c5 compare
PP_2375 -1.4 -8.3 cobalamin-dependent methionine synthase compare
PP_0377 -1.4 -1.7 coenzyme PQQ synthesis protein D compare
PP_4238 -1.4 -2.4 conserved protein of unknown function compare
PP_3417 -1.4 -3.9 D-gluconate transporter compare
PP_1428 -1.4 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_5225 -1.4 -1.4 frataxin compare
PP_5000 -1.4 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_4782 -1.3 -3.4 Phosphomethylpyrimidine kinase compare
PP_5393 -1.3 -1.6 putative metal-binding chaperone compare
PP_3105 -1.3 -2.6 conserved membrane protein of unknown function compare
PP_1110 -1.3 -3.0 serine acetyltransferase compare
PP_1589 -1.3 -5.5 uridylyltransferase compare
PP_4268 -1.3 -1.5 nucleoid-associated broad specificity regulator compare
PP_0593 -1.3 -1.1 putative ribosome-binding factor compare
PP_1672 -1.3 -4.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4124 -1.3 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_4937 -1.3 -2.7 toluene tolerance protein compare
PP_1237 -1.3 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3821 -1.3 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1681 -1.2 -6.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0363 -1.2 -6.7 8-amino-7-oxononanoate synthase compare
PP_0630 -1.2 -1.1 DNA gyrase inhibitor YacG compare
PP_0164 -1.2 -3.4 conserved protein of unknown function compare
PP_4699 -1.2 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1111 -1.2 -4.6 putative Synthetase compare
PP_4129 -1.2 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3765 -1.2 -4.5 H-NS family protein MvaT compare
PP_0949 -1.2 -3.0 putative ATP-binding protein UPF0042 compare
PP_3810 -1.1 -2.2 conserved protein of unknown function compare
PP_t10 -1.1 -1.0 tRNA-Pro compare
PP_4131 -1.1 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_4364 -1.1 -2.4 putative Anti-sigma F factor antagonist compare
PP_4824 -1.1 -3.9 Sensor histidine kinase/response regulator compare
PP_2309 -1.1 -1.3 conserved protein of unknown function compare
PP_2880 -1.1 -2.6 Transcriptional regulator, TetR family compare
PP_1178 -1.1 -2.0 conserved protein of unknown function compare
PP_1109 -1.1 -7.3 Transcriptional regulator, GntR family compare
PP_1679 -1.1 -1.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4099 -1.1 -10.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4984 -1.1 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5025 -1.0 -5.3 Glucans biosynthesis glucosyltransferase H compare
PP_1994 -1.0 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1426 -1.0 -5.4 L-aspartate oxidase compare
PP_2140 -1.0 -4.1 conserved protein of unknown function compare
PP_1011 -1.0 -5.1 glucokinase compare
PP_1128 -1.0 -2.5 OmpA family protein compare
PP_2390 -1.0 -3.9 Transcriptional regulator, LysR family compare
PP_4832 -1.0 -2.4 Precorrin-6x reductase compare
PP_1366 -1.0 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_3884 -1.0 -3.1 Phage holin, lambda family compare
PP_4693 -1.0 -2.9 RNA polymerase-binding transcription factor DksA compare
PP_3506 -1.0 -1.9 Magnesium chelatase, subunit ChII compare
PP_2145 -1.0 -1.4 beta-N-acetylglucosaminidase compare
PP_5093 -1.0 -1.2 twitching motility protein compare
PP_0127 -1.0 -2.3 Thiol:disulfide interchange protein compare
PP_0735 -1.0 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_1650 -1.0 -8.1 Sensor protein GacS compare
PP_2640 -1.0 -2.3 Acetyltransferase, GNAT family compare
PP_4964 -1.0 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_3481 -1.0 -1.1 conserved exported protein of unknown function compare
PP_1987 -1.0 -1.8 Methlytransferase, UbiE/COQ5 family compare
PP_0405 -1.0 -4.1 conserved protein of unknown function compare
PP_2857 -1.0 -2.0 conserved exported protein of unknown function compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_2107 -1.0 -1.3 conserved protein of unknown function compare
PP_1216 -0.9 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4830 -0.9 -3.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_0888 -0.9 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1041 -0.9 -1.7 twin arginine protein export complex subunit compare
PP_2088 -0.9 -1.9 RNA polymerase sigma factor SigX compare
PP_2189 -0.9 -2.0 conserved protein of unknown function compare
PP_2931 -0.9 -1.9 conserved protein of unknown function compare
PP_1233 -0.9 -2.3 sulfurtransferase compare
PP_1269 -0.9 -1.0 Universal stress protein family compare
PP_5026 -0.9 -4.6 Glucans biosynthesis protein G compare
PP_4895 -0.9 -1.9 tRNA dimethylallyltransferase compare
PP_3507 -0.9 -5.3 Aerobic cobaltochelatase subunit CobN compare
PP_1826 -0.9 -1.8 Hydrolase, isochorismatase family compare
PP_3233 -0.9 -2.7 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_5104 -0.9 -4.0 thiazole synthase compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_3904 -0.9 -1.9 conserved protein of unknown function compare
PP_0827 -0.9 -1.6 putative phosphonate transport system permease protein PtxC compare
PP_3833 -0.9 -2.1 Response regulator compare
PP_0048 -0.9 -1.0 conserved protein of unknown function compare
PP_4285 -0.9 -2.2 5-hydroxyisourate hydrolase compare
PP_4826 -0.9 -3.6 Precorrin-3B C17-methyltransferase compare
PP_1812 -0.9 -1.1 conserved protein of unknown function compare
PP_1568 -0.9 -1.1 conserved protein of unknown function compare
PP_0025 -0.9 -1.0 hypothetical protein compare
PP_3434 -0.9 -1.0 conserved protein of unknown function compare
PP_0365 -0.9 -3.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0986 -0.8 -2.4 aminomethyltransferase compare
PP_1655 -0.8 -1.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3726 -0.8 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_5227 -0.8 -3.8 diaminopimelate decarboxylase compare
PP_2878 -0.8 -1.9 conserved protein of unknown function compare
PP_1355 -0.8 -4.0 Muropeptide permease AmpG compare
PP_1770 -0.8 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0938 -0.8 -4.2 conserved protein of unknown function compare
PP_0254 -0.8 -1.8 conserved protein of unknown function compare
PP_4419 -0.8 -1.9 transposase compare
PP_0989 -0.8 -2.0 glycine cleavage system H protein 1 compare
PP_5639 -0.8 -3.4 conserved exported protein of unknown function compare
PP_1677 -0.8 -2.4 Adenosyl-cobyric acid synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms