Experiment set20IT004 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source D-Glucose

200 most detrimental genes:

  gene name fitness t score description  
PP_5051 +1.3 2.5 conserved protein of unknown function compare
PP_0855 +1.1 2.5 conserved protein of unknown function compare
PP_2280 +1.1 2.8 conserved protein of unknown function compare
PP_5528 +1.0 0.9 conserved protein of unknown function compare
PP_2341 +1.0 1.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1186 +1.0 1.7 two component system DNA-binding transcriptional dual regulator compare
PP_1824 +1.0 2.3 Smr domain protein compare
PP_1055 +1.0 0.8 Type II secretion pathway protein GspN compare
PP_2387 +0.9 2.8 conserved protein of unknown function compare
PP_1455 +0.9 2.2 conserved protein of unknown function compare
PP_5338 +0.9 2.3 aspartate ammonia-lyase compare
PP_0574 +0.9 7.1 DNA-binding response regulator, LuxR family compare
PP_1113 +0.8 6.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4720 +0.8 2.6 putative RNA binding protein compare
PP_2122 +0.8 2.8 molybdenum cofactor biosynthesis protein B compare
PP_5054 +0.8 1.5 glutaredoxin 3 compare
PP_5329 +0.8 2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2858 +0.8 2.4 conserved exported protein of unknown function compare
PP_5000 +0.8 1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_2718 +0.8 2.7 arsenic resistance transcriptional regulator compare
PP_1783 +0.8 1.6 dTDP-glucose pyrophosphorylase compare
PP_4808 +0.8 2.7 23S rRNA m3psi1915 methyltransferase compare
PP_4406 +0.8 1.1 conserved protein of unknown function compare
PP_4373 +0.8 6.8 Transcriptional regulator FleQ compare
PP_0628 +0.8 2.7 conserved protein of unknown function compare
PP_5580 +0.8 1.3 protein of unknown function compare
PP_5473 +0.8 2.0 putative transcriptional regulator, LuxR family compare
PP_0274 +0.8 1.9 putative transcriptional regulator containing HTH domain compare
PP_3496 +0.8 3.7 Endoribonuclease L-PSP compare
PP_1623 +0.8 4.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_2046 +0.8 2.7 Transcriptional regulator, LysR family compare
PP_0166 +0.8 6.2 HlyD family secretion protein compare
PP_0806 +0.7 6.9 putative Surface adhesion protein compare
PP_5654 +0.7 0.8 putative phosphotriesterase compare
PP_0803 +0.7 4.8 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5327 +0.7 2.4 putative phosphate ABC transporter, permease subunit compare
PP_4581 +0.7 2.8 putative amidotransferase compare
PP_1855 +0.7 3.8 conserved exported protein of unknown function compare
PP_0848 +0.7 1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0168 +0.7 6.5 putative surface adhesion protein compare
PP_4424 +0.7 1.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2725 +0.7 2.7 Protease PfpI compare
PP_5621 +0.7 1.3 protein of unknown function compare
PP_2330 +0.7 2.5 conserved protein of unknown function compare
PP_0167 +0.7 6.0 Toxin secretion ATP-binding protein compare
PP_5486 +0.7 1.0 conserved protein of unknown function compare
PP_0903 +0.7 2.5 conserved protein of unknown function compare
PP_2568 +0.7 1.1 Ring-cleaving dioxygenase compare
PP_0566 +0.7 1.1 translation-related factor compare
PP_1571 +0.7 2.0 conserved protein of unknown function compare
PP_1008 +0.6 1.8 RNA polymerase subunit sigma-24 compare
PP_1729 +0.6 1.6 conserved protein of unknown function compare
PP_0804 +0.6 3.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_5658 +0.6 2.5 protein of unknown function compare
PP_0401 +0.6 1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_0805 +0.6 3.9 Outer membrane efflux protein compare
PP_1690 +0.6 2.1 conserved protein of unknown function compare
PP_2403 +0.6 1.3 Chemotaxis protein CheY compare
PP_0901 +0.6 2.9 DNA-binding response regulator compare
PP_3808 +0.6 1.4 Antibiotic synthesis protein MbtH compare
PP_1096 +0.6 1.6 putative electron transport complex protein compare
PP_0711 +0.6 1.3 putative hydrolase compare
PP_2979 +0.6 3.1 conserved protein of unknown function compare
PP_1713 +0.6 1.5 Transcriptional regulator PcaQ compare
PP_1002 +0.6 2.1 arginine/ornithine antiporter compare
PP_1523 +0.6 2.4 conserved protein of unknown function compare
PP_0333 +0.6 3.1 conserved exported protein of unknown function compare
PP_3519 +0.6 0.9 putative Lipoprotein compare
PP_3866 +0.6 1.4 conserved protein of unknown function compare
PP_1947 +0.6 2.6 conserved protein of unknown function compare
PP_0998 +0.6 2.7 conserved protein of unknown function compare
PP_1241 +0.6 2.4 conserved protein of unknown function compare
PP_5533 +0.6 1.2 conserved protein of unknown function compare
PP_1408 +0.6 3.1 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_2723 +0.6 2.6 Uncharacterized oxidoreductase YhdF compare
PP_0685 +0.6 0.8 conserved protein of unknown function compare
PP_0117 +0.6 2.3 Zn(2+) ABC transporter - permease subunit compare
PP_3185 +0.6 1.4 Pet18 protein compare
PP_4396 +0.6 2.6 conserved protein of unknown function compare
PP_0984 +0.6 2.1 conserved membrane protein of unknown function compare
PP_5480 +0.6 2.1 conserved exported protein of unknown function compare
PP_2847 +0.5 1.0 Urease accessory protein UreJ compare
PP_5328 +0.5 0.7 putative phosphate transport system permease protein compare
PP_4787 +0.5 1.7 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4705 +0.5 2.1 Glyoxalase compare
PP_2318 +0.5 1.7 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_0262 +0.5 2.5 conserved protein of unknown function compare
PP_3864 +0.5 1.7 putative Phage FluMu DNA circulation protein compare
PP_3559 +0.5 1.6 glycine betaine ABC transporter (permease) compare
PP_2759 +0.5 0.8 ribose ABC transporter - ATP-binding subunit compare
PP_5520 +0.5 1.5 conserved protein of unknown function compare
PP_2791 +0.5 2.1 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_1084 +0.5 2.2 putative peroxiredoxin compare
PP_3726 +0.5 0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_2214 +0.5 1.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3480 +0.5 1.6 conserved protein of unknown function compare
PP_5713 +0.5 2.6 conserved protein of unknown function compare
PP_0834 +0.5 1.3 Sec translocation complex subunit YajC compare
PP_5745 +0.5 2.6 paraquat-inducible protein A compare
PP_1344 +0.5 1.0 conserved protein of unknown function compare
PP_2245 +0.5 2.2 Transcriptional regulator, Cro/CI family compare
PP_2836 +0.5 2.3 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_2802 +0.5 2.3 Amino acid permease family protein compare
PP_5110 +0.5 1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0839 +0.5 2.1 tRNA Cm32/Um32 methyltransferase compare
PP_5224 +0.5 2.2 conserved protein of unknown function compare
PP_3201 +0.5 1.4 BNR domain protein compare
PP_4844 +0.5 1.2 putative Urea ABC transporter, ATP-binding protein compare
PP_2434 +0.5 2.6 conserved protein of unknown function compare
PP_5119 +0.5 2.8 Transcriptional regulator, TetR family compare
PP_2633 +0.5 1.0 conserved protein of unknown function compare
PP_2160 +0.5 1.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1445 +0.5 2.9 carbohydrate-selective porin compare
PP_1178 +0.5 1.6 conserved protein of unknown function compare
PP_2972 +0.5 1.5 conserved protein of unknown function compare
PP_0411 +0.5 1.7 Polyamine ABC transporter, ATP-binding protein compare
PP_3304 +0.5 2.9 Multidrug resistance transporter, Bcr/CflA family compare
PP_4627 +0.5 1.3 transcriptional regulator, LysR family compare
PP_4162 +0.5 1.5 conserved membrane protein of unknown function compare
PP_4470 +0.5 1.6 putative transcriptional regulator (Arc domain-containing) compare
PP_0355 +0.5 1.9 Response regulator compare
PP_4171 +0.5 4.1 conserved exported protein of unknown function compare
PP_1268 +0.5 1.1 putative HtrA suppressor protein sohA compare
PP_4317 +0.4 1.2 conserved protein of unknown function compare
PP_1368 +0.4 1.5 putative membrane protein containing a glycosyltransferase domain compare
PP_3353 +0.4 1.6 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_4953 +0.4 1.6 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_0287 +0.4 2.6 conserved exported protein of unknown function compare
PP_3075 +0.4 1.4 putative transcriptional regulator compare
PP_4556 +0.4 1.6 conserved protein of unknown function compare
PP_1208 +0.4 0.8 conserved protein of unknown function, SlyX family compare
PP_2700 +0.4 1.4 AhpC/TSA family protein compare
PP_2864 +0.4 1.4 conserved protein of unknown function compare
PP_1415 +0.4 1.9 putative membrane associated enzyme subunit compare
PP_4820 +0.4 1.9 tRNA-dihydrouridine synthase B compare
PP_1099 +0.4 0.7 Cold shock protein CapB compare
PP_5053 +0.4 2.4 Protein-export protein SecB compare
PP_3906 +0.4 1.6 conserved protein of unknown function compare
PP_2439 +0.4 1.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_5381 +0.4 1.3 hypothetical protein compare
PP_4337 +0.4 2.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5186 +0.4 2.7 acetylornithine deacetylase compare
PP_1512 +0.4 1.0 conserved protein of unknown function compare
PP_4817 +0.4 1.7 MaoC domain protein compare
PP_5428 +0.4 1.4 conserved exported protein of unknown function compare
PP_3576 +0.4 1.9 putative Transmembrane sensor compare
PP_3449 +0.4 0.9 conserved exported protein of unknown function compare
PP_1536 +0.4 1.3 conserved protein of unknown function compare
PP_2716 +0.4 1.3 arsenate reductase compare
PP_1489 +0.4 1.5 CheW domain protein compare
PP_4836 +0.4 1.5 conserved exported protein of unknown function compare
PP_4901 +0.4 1.4 conserved inner membrane protein compare
PP_4875 +0.4 1.7 conserved membrane protein of unknown function compare
PP_3454 +0.4 2.0 putative transcriptional regulatory protein compare
PP_0412 +0.4 2.5 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0902 +0.4 2.5 integral membrane sensor signal transduction histidine kinase compare
PP_1454 +0.4 0.8 conserved protein of unknown function compare
PP_0246 +0.4 1.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_0351 +0.4 1.7 putative Transmembrane sensor protein compare
PP_3243 +0.4 1.4 Acetyltransferase, GNAT family compare
PP_2704 +0.4 2.0 Peptidase, M20/M25/M40 family compare
PP_3050 +0.4 1.9 conserved protein of unknown function compare
PP_0162 +0.4 2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3989 +0.4 1.5 DNA-cytosine methyltransferase compare
PP_4528 +0.4 0.8 conserved protein of unknown function compare
PP_4598 +0.4 2.3 conserved membrane protein of unknown function compare
PP_4208 +0.4 2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0905 +0.4 1.0 conserved exported protein of unknown function compare
PP_5241 +0.4 1.4 DNA-binding response regulator, LuxR family compare
PP_0629 +0.4 1.9 conserved membrane protein of unknown function compare
PP_3488 +0.4 1.6 Sco1/SenC family protein compare
PP_3799 +0.4 1.0 conserved exported protein of unknown function compare
PP_3089 +0.4 1.5 conserved protein of unknown function compare
PP_1020 +0.4 1.0 putative glucose-6-phosphate 1-epimerase compare
PP_2437 +0.4 2.4 putative Acyl-CoA dehydrogenase compare
PP_3346 +0.4 1.5 Nickel transporter ATP-binding protein compare
PP_0546 +0.4 2.3 sigma-54 dependent transcriptional regulator compare
PP_2650 +0.4 1.0 putative 4-hydroxybutyrate dehydrogenase compare
PP_1168 +0.4 1.9 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_4268 +0.4 0.8 nucleoid-associated broad specificity regulator compare
PP_1000 +0.4 1.2 ornithine carbamoyltransferase, catabolic compare
PP_3116 +0.4 2.0 transcriptional repressor compare
PP_3810 +0.4 0.7 conserved protein of unknown function compare
PP_5198 +0.4 1.1 conserved protein of unknown function compare
PP_5586 +0.4 1.4 exported protein of unknown function compare
PP_3773 +0.4 0.8 conserved protein of unknown function compare
PP_3901 +0.4 1.6 conserved protein of unknown function compare
PP_5572 +0.4 0.9 protein of unknown function compare
PP_1142 +0.4 0.5 conserved protein of unknown function compare
PP_2504 +0.4 1.2 putative tautomerase K2 compare
PP_0508 +0.4 1.0 conserved exported protein of unknown function compare
PP_4904 +0.4 2.2 Flagellar motor rotation protein compare
PP_4385 +0.4 2.0 flagellar basal-body rod protein FlgG compare
PP_1300 +0.4 2.1 putative amino acid ABC transporter - ATP-binding subunit compare
PP_4452 +0.4 1.4 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_1364 +0.4 2.3 conserved exported protein of unknown function compare
PP_1999 +0.4 0.6 membrane protein required for colicin V production compare
PP_1736 +0.4 1.0 conserved protein of unknown function compare
PP_5530 +0.4 2.1 protein of unknown function compare
PP_4345 +0.4 2.1 Transcriptional regulator, GntR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms