Experiment set20IT003 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -6.1 -7.3 Ornithine carbamoyltransferase compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_0292 -5.7 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2168 -5.5 -13.2 Transaldolase compare
PP_1985 -5.4 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_2001 -5.2 -12.4 O-succinylhomoserine sulfhydrylase compare
PP_5185 -5.0 -7.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_4909 -4.7 -6.4 phosphoserine phosphatase compare
PP_4678 -4.7 -14.0 Ketol-acid reductoisomerase compare
PP_1995 -4.6 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -4.5 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5289 -4.5 -6.1 Acetylglutamate kinase compare
PP_0966 -4.5 -10.0 Histidinol dehydrogenase compare
PP_0083 -4.4 -9.3 tryptophan synthase beta chain compare
PP_0422 -4.4 -4.5 Indole-3-glycerol phosphate synthase compare
PP_2371 -4.4 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1988 -4.4 -9.8 3-isopropylmalate dehydrogenase compare
PP_5128 -4.3 -8.4 Dihydroxy-acid dehydratase compare
PP_5097 -4.2 -12.6 homoserine O-acetyltransferase compare
PP_0289 -4.2 -7.1 Imidazoleglycerol-phosphate dehydratase compare
PP_4680 -4.2 -12.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4268 -4.1 -2.2 nucleoid-associated broad specificity regulator compare
PP_3946 -4.0 -2.1 HTH-type transcriptional repressor NicR compare
PP_0184 -4.0 -7.5 Argininosuccinate lyase compare
PP_1025 -4.0 -11.3 2-isopropylmalate synthase compare
PP_4679 -3.9 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -3.8 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_0967 -3.8 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -3.7 -7.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0417 -3.7 -14.0 Anthranilate synthase component 1 compare
PP_0421 -3.6 -6.4 Anthranilate phosphoribosyltransferase compare
PP_4804 -3.6 -3.5 RlpA-like lipoprotein compare
PP_1986 -3.6 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_1650 -3.6 -20.3 Sensor protein GacS compare
PP_4099 -3.5 -30.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4890 -3.4 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5303 -3.4 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5347 -3.3 -9.3 pyruvate carboxylase subunit A compare
PP_1237 -3.3 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0787 -3.3 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5346 -3.2 -7.6 pyruvate carboxylase subunit B compare
PP_1088 -3.2 -9.8 Argininosuccinate synthase compare
PP_5217 -3.2 -10.0 Polyphosphate kinase compare
PP_1022 -3.1 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4874 -3.1 -2.1 50S ribosomal protein L9 compare
PP_2328 -3.1 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_0957 -2.9 -2.6 D-arabinose 5-phosphate isomerase compare
PP_2370 -2.9 -3.0 conserved protein of unknown function compare
PP_5098 -2.9 -5.8 methionine biosynthesis protein MetW compare
PP_4785 -2.9 -6.1 conserved exported protein of unknown function compare
PP_0164 -2.9 -6.9 conserved protein of unknown function compare
PP_5155 -2.8 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4994 -2.8 -5.4 conserved protein of unknown function compare
PP_4364 -2.7 -3.7 putative Anti-sigma F factor antagonist compare
PP_0291 -2.7 -3.0 conserved protein of unknown function compare
PP_3999 -2.7 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5348 -2.6 -6.6 Transcriptional regulator, LysR family compare
PP_3417 -2.6 -5.4 D-gluconate transporter compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_4984 -2.5 -7.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_0406 -2.4 -3.7 Nucleotidyltransferase family protein compare
PP_0363 -2.4 -8.4 8-amino-7-oxononanoate synthase compare
PP_2327 -2.4 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1898 -2.3 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4699 -2.2 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0965 -2.2 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0362 -2.2 -7.8 Biotin synthase compare
PP_4693 -2.1 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_4122 -2.1 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2302 -2.1 -5.0 DNA-binding, ATP-dependent protease compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1826 -2.0 -2.6 Hydrolase, isochorismatase family compare
PP_4387 -2.0 -4.1 conserved exported protein of unknown function compare
PP_5350 -2.0 -3.3 Transcriptional regulator, RpiR family compare
PP_0364 -2.0 -5.9 pimeloyl-[acp] methyl ester esterase compare
PP_4977 -1.9 -7.6 5,10-methylenetetrahydrofolate reductase compare
PP_2375 -1.9 -9.2 cobalamin-dependent methionine synthase compare
PP_1764 -1.9 -2.8 Phosphoglycolate phosphatase 2 compare
PP_1097 -1.9 -1.6 Methionine--tRNA ligase compare
PP_4964 -1.9 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1676 -1.9 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1672 -1.9 -4.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1679 -1.9 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1783 -1.9 -1.7 dTDP-glucose pyrophosphorylase compare
PP_1362 -1.8 -3.3 pyruvate kinase II compare
PP_1656 -1.8 -7.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4902 -1.7 -2.8 Oligoribonuclease compare
PP_0833 -1.7 -1.2 queuine tRNA-ribosyltransferase compare
PP_1304 -1.7 -6.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5583 -1.7 -2.1 conserved protein of unknown function compare
PP_0719 -1.7 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4943 -1.7 -1.6 putative Glycosyl transferase compare
PP_1493 -1.7 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2378 -1.7 -2.4 Fe/S biogenesis protein NfuA compare
PP_0365 -1.6 -5.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4695 -1.6 -7.1 Sensory box histidine kinase compare
PP_0420 -1.6 -5.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1215 -1.6 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1733 -1.6 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_0366 -1.5 -2.9 dethiobiotin synthetase compare
PP_5039 -1.5 -2.6 conserved protein of unknown function compare
PP_1655 -1.4 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5104 -1.4 -5.5 thiazole synthase compare
PP_1012 -1.4 -6.0 DNA-binding response regulator compare
PP_1675 -1.4 -4.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0775 -1.4 -1.7 conserved protein of unknown function compare
PP_4738 -1.4 -3.9 conserved exported protein of unknown function compare
PP_0001 -1.4 -1.8 probable chromosome-partitioning protein compare
PP_2793 -1.4 -1.2 Acyl-CoA dehydrogenase family protein compare
PP_2341 -1.4 -2.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1011 -1.4 -6.0 glucokinase compare
PP_0914 -1.4 -5.6 GGDEF domain protein compare
PP_2231 -1.4 -3.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1231 -1.3 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3506 -1.3 -3.6 Magnesium chelatase, subunit ChII compare
PP_1664 -1.3 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0949 -1.3 -4.0 putative ATP-binding protein UPF0042 compare
PP_0122 -1.3 -2.5 conserved exported protein of unknown function compare
PP_0999 -1.3 -2.3 carbamate kinase compare
PP_3105 -1.3 -1.9 conserved membrane protein of unknown function compare
PP_4406 -1.3 -2.4 conserved protein of unknown function compare
PP_t12 -1.3 -1.1 tRNA-Thr compare
PP_4340 -1.3 -3.1 response regulator for chemotactic signal transduction compare
PP_2633 -1.3 -1.4 conserved protein of unknown function compare
PP_5486 -1.3 -1.8 conserved protein of unknown function compare
PP_1673 -1.2 -3.8 cobyrinate a,c-diamide synthase compare
PP_1681 -1.2 -5.4 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1013 -1.2 -3.8 Sensor histidine kinase compare
PP_3409 -1.2 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_1654 -1.2 -2.3 cysteine synthase B compare
PP_4094 -1.2 -1.7 conserved protein of unknown function compare
PP_1770 -1.2 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_3507 -1.2 -6.7 Aerobic cobaltochelatase subunit CobN compare
PP_1528 -1.2 -0.8 conserved protein of unknown function compare
PP_1015 -1.2 -4.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_1303 -1.2 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_0377 -1.2 -1.8 coenzyme PQQ synthesis protein D compare
PP_4482 -1.2 -2.7 Transcriptional regulator, AraC family compare
PP_4829 -1.2 -1.6 putative precorrin-3B synthase compare
PP_5267 -1.2 -1.9 putative cytochrome c5 compare
PP_1017 -1.2 -4.0 mannose/glucose ABC transporter, permease protein compare
PP_1444 -1.2 -6.8 quinoprotein glucose dehydrogenase compare
PP_4826 -1.1 -4.3 Precorrin-3B C17-methyltransferase compare
PP_5686 -1.1 -3.8 protein of unknown function compare
PP_1677 -1.1 -3.5 Adenosyl-cobyric acid synthase compare
PP_5310 -1.1 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_5639 -1.1 -5.2 conserved exported protein of unknown function compare
PP_4832 -1.1 -2.4 Precorrin-6x reductase compare
PP_4379 -1.1 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4827 -1.1 -4.9 Precorrin-2 C(20)-methyltransferase compare
PP_1812 -1.1 -1.6 conserved protein of unknown function compare
PP_1912 -1.1 -2.6 Phosphate acyltransferase compare
PP_1016 -1.1 -4.4 mannose/glucose ABC transporter, permease protein compare
PP_0547 -1.0 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1678 -1.0 -2.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0725 -1.0 -3.4 conserved hypothetical TPR repeat protein compare
PP_0888 -1.0 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_4828 -1.0 -1.4 Precorrin-8X methylmutase compare
PP_1353 -1.0 -1.7 conserved membrane protein of unknown function compare
PP_3730 -1.0 -1.8 Transcriptional regulatory protein AruR compare
PP_2336 -1.0 -2.4 aconitate hydratase 1 compare
PP_2903 -1.0 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5SB -1.0 -2.2 5S ribosomal RNA compare
PP_2087 -1.0 -1.6 CmpX protein compare
PP_0007 -1.0 -2.3 conserved hypothetical protein compare
PP_1534 -1.0 -2.2 conserved protein of unknown function compare
PP_0376 -1.0 -3.8 Coenzyme PQQ synthesis protein E compare
PP_2773 -1.0 -1.5 conserved protein of unknown function compare
PP_3883 -0.9 -2.2 putative Phage holin compare
PP_1553 -0.9 -0.9 conserved protein of unknown function compare
PP_2560 -0.9 -3.3 alkaline protease secretion transporter ATP-binding protein compare
PP_4004 -0.9 -2.2 DNA translocase FtsK compare
PP_5582 -0.9 -1.1 conserved protein of unknown function compare
PP_4556 -0.9 -2.3 conserved protein of unknown function compare
PP_2229 -0.9 -2.1 putative K(+)/H(+) antiporter subunit C compare
PP_1233 -0.9 -2.6 sulfurtransferase compare
PP_0516 -0.9 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5739 -0.9 -2.9 protein of unknown function compare
PP_3508 -0.9 -1.4 Protein CobW compare
PP_4782 -0.9 -3.1 Phosphomethylpyrimidine kinase compare
PP_2795 -0.9 -2.6 AMP-binding domain protein compare
PP_5552 -0.9 -1.8 conserved protein of unknown function compare
PP_2088 -0.9 -1.8 RNA polymerase sigma factor SigX compare
PP_4121 -0.9 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4477 -0.9 -3.6 N-succinylarginine dihydrolase compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4130 -0.9 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4560 -0.9 -1.5 putative Ribonuclease BN compare
PP_4830 -0.9 -3.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_5168 -0.9 -1.6 sulfate/thiosulfate import ATP-binding protein compare
PP_3919 -0.8 -1.1 conserved protein of unknown function compare
PP_1346 -0.8 -1.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5487 -0.8 -2.0 conserved protein of unknown function compare
PP_0065 -0.8 -1.5 NAD-binding component of TrK potassium transporter compare
PP_4989 -0.8 -2.7 Protein PilJ compare
PP_0958 -0.8 -3.3 phospholipid ABC transporter ATP-binding subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms