Experiment set20IT003 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source D-Glucose

200 most detrimental genes:

  gene name fitness t score description  
PP_4373 +1.2 9.7 Transcriptional regulator FleQ compare
PP_3447 +1.1 1.9 conserved membrane protein of unknown function compare
PP_4642 +1.1 2.0 Cyclic diguanosine monophosphate-binding protein compare
PP_4517 +1.1 3.8 conserved protein of unknown function compare
PP_1623 +1.1 6.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_1410 +1.1 1.4 conserved protein of unknown function compare
PP_0804 +1.0 6.7 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2976 +1.0 2.2 putative transposase compare
PP_3551 +1.0 2.3 DNA-binding response regulator, LuxR family compare
PP_1045 +1.0 2.2 Type II secretion pathway protein XcpP compare
PP_0846 +1.0 1.2 DnaK-like molecular chaperone specific for IscU compare
PP_0276 +1.0 1.6 Transcriptional regulator, Cro/CI family compare
PP_3892 +1.0 1.8 conserved protein of unknown function compare
PP_0440 +1.0 4.4 Elongation factor Tu-A compare
PP_4273 +0.9 2.2 Transcriptional regulator, MerR family compare
PP_5705 +0.9 1.7 protein of unknown function compare
PP_4581 +0.9 2.7 putative amidotransferase compare
PP_5051 +0.9 2.5 conserved protein of unknown function compare
PP_5572 +0.9 2.6 protein of unknown function compare
PP_5528 +0.9 1.7 conserved protein of unknown function compare
PP_2718 +0.9 2.9 arsenic resistance transcriptional regulator compare
PP_4271 +0.9 1.2 conserved protein of unknown function compare
PP_5597 +0.8 3.9 conserved protein of unknown function compare
PP_5666 +0.8 2.6 putative microcin B17-like processing protein, McbB family compare
PP_2847 +0.8 1.5 Urease accessory protein UreJ compare
PP_0806 +0.8 7.6 putative Surface adhesion protein compare
PP_4136 +0.8 0.7 Transcriptional regulator, LuxR family compare
PP_4942 +0.8 1.5 conserved protein of unknown function compare
PP_5324 +0.8 2.0 Response regulator compare
PP_5093 +0.8 1.6 twitching motility protein compare
PP_1513 +0.8 1.7 Ribosomal RNA small subunit methyltransferase J compare
PP_3017 +0.8 2.9 O6-methylguanine-DNA methyltransferase compare
PP_5328 +0.8 1.9 putative phosphate transport system permease protein compare
PP_4227 +0.8 1.5 conserved protein of unknown function compare
PP_5445 +0.8 1.6 conserved protein of unknown function compare
PP_1186 +0.8 1.5 two component system DNA-binding transcriptional dual regulator compare
PP_5604 +0.8 1.7 putative subtilisin-like serine protease compare
PP_2403 +0.8 1.6 Chemotaxis protein CheY compare
PP_3328 +0.8 2.0 putative Ring-cleaving dioxygenase compare
PP_0574 +0.7 6.1 DNA-binding response regulator, LuxR family compare
PP_2160 +0.7 2.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_3460 +0.7 2.9 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1113 +0.7 5.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3693 +0.7 2.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3926 +0.7 1.5 short-chain dehydrogenase compare
PP_5017 +0.7 1.1 Sec-independent protein translocase protein TatB compare
PP_4917 +0.7 2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5198 +0.7 1.6 conserved protein of unknown function compare
PP_2907 +0.7 1.7 DNA-binding response regulator compare
PP_0803 +0.7 3.6 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4196 +0.7 1.4 conserved exported protein of unknown function compare
PP_0711 +0.7 1.7 putative hydrolase compare
PP_0805 +0.7 4.1 Outer membrane efflux protein compare
PP_0633 +0.7 1.5 Type 4 fimbrial assembly protein PilC compare
PP_4342 +0.7 1.4 flagellar synthesis regulator, putative ATPase compare
PP_2826 +0.7 2.2 Transcriptional regulator MexT compare
PP_1633 +0.7 2.5 conserved exported protein of unknown function compare
PP_3637 +0.7 1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4946 +0.7 4.4 sodium/L-proline transporter compare
PP_1122 +0.7 1.5 OmpA family protein compare
PP_1001 +0.7 1.6 arginine deiminase compare
PP_0319 +0.7 1.3 conserved protein of unknown function compare
PP_2500 +0.7 2.7 conserved protein of unknown function compare
PP_4365 +0.7 3.4 Flagellar protein FliJ compare
PP_2031 +0.7 1.9 conserved protein of unknown function compare
PP_5224 +0.7 2.0 conserved protein of unknown function compare
PP_1319 +0.6 1.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0274 +0.6 1.5 putative transcriptional regulator containing HTH domain compare
PP_0306 +0.6 1.5 conserved protein of unknown function compare
PP_1325 +0.6 3.4 putative lipoprotein compare
PP_2387 +0.6 2.1 conserved protein of unknown function compare
PP_5687 +0.6 2.3 putative permease of the major facilitator superfamily compare
PP_5514 +0.6 2.6 conserved protein of unknown function compare
PP_3810 +0.6 1.7 conserved protein of unknown function compare
PP_4792 +0.6 1.5 conserved exported protein of unknown function compare
PP_1466 +0.6 1.9 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_3201 +0.6 3.3 BNR domain protein compare
PP_4814 +0.6 1.4 ATP-dependent protease La domain protein compare
PP_0607 +0.6 1.5 putative Type IV pili biogenesis protein FimT compare
PP_5594 +0.6 1.6 conserved protein of unknown function compare
PP_0770 +0.6 1.2 PemI-like protein compare
PP_4844 +0.6 1.9 putative Urea ABC transporter, ATP-binding protein compare
PP_1096 +0.6 1.9 putative electron transport complex protein compare
PP_0066 +0.6 3.4 Ribosomal RNA small subunit methyltransferase B compare
PP_2510 +0.6 1.4 conserved protein of unknown function compare
PP_3043 +0.6 1.3 conserved protein of unknown function compare
PP_1269 +0.6 1.0 Universal stress protein family compare
PP_4905 +0.6 3.1 Flagellar motor rotation protein compare
PP_5337 +0.6 2.5 LysR family transcriptional regulator compare
PP_0126 +0.6 2.0 Cytochrome c4 compare
PP_2655 +0.6 1.4 conserved protein of unknown function compare
PP_0774 +0.6 2.8 Phosphate acetyltransferase compare
PP_4875 +0.6 2.2 conserved membrane protein of unknown function compare
PP_2572 +0.6 2.3 conserved protein of unknown function compare
PP_5580 +0.6 1.0 protein of unknown function compare
PP_0137 +0.6 3.1 glutamate/aspartate-proton DAACS transporter compare
PP_3052 +0.6 0.9 conserved protein of unknown function compare
PP_3307 +0.6 1.0 conserved protein of unknown function compare
PP_3874 +0.6 1.2 conserved protein of unknown function compare
PP_4720 +0.6 1.8 putative RNA binding protein compare
PP_2071 +0.6 2.5 conserved protein of unknown function compare
PP_3237 +0.6 1.8 Universal stress protein family compare
PP_2340 +0.6 1.5 conserved protein of unknown function compare
PP_4383 +0.6 2.9 Flagellar P-ring protein compare
PP_1512 +0.6 1.5 conserved protein of unknown function compare
PP_4584 +0.6 1.4 putative endonuclease compare
PP_5566 +0.6 2.1 protein of unknown function compare
PP_4162 +0.6 1.8 conserved membrane protein of unknown function compare
PP_1021 +0.6 2.8 DNA-binding transcriptional regulator compare
PP_2030 +0.6 2.5 conserved protein of unknown function compare
PP_5279 +0.6 1.3 conserved protein of unknown function compare
PP_2319 +0.6 1.9 conserved protein of unknown function compare
PP_1397 +0.6 2.1 conserved protein of unknown function compare
PP_3258 +0.6 1.9 conserved protein of unknown function compare
PP_3559 +0.6 1.5 glycine betaine ABC transporter (permease) compare
PP_4820 +0.6 2.3 tRNA-dihydrouridine synthase B compare
PP_1692 +0.6 1.3 conserved protein of unknown function compare
PP_0048 +0.5 0.9 conserved protein of unknown function compare
PP_0642 +0.5 2.0 conserved membrane protein of unknown function compare
PP_2078 +0.5 2.5 transcriptional activator protein LysR compare
PP_4396 +0.5 2.7 conserved protein of unknown function compare
PP_5191 +0.5 1.2 conserved exported protein of unknown function compare
PP_3359 +0.5 1.3 putative Hydroxycinnamic acid degradation regulator compare
PP_0355 +0.5 2.2 Response regulator compare
PP_4449 +0.5 1.6 conserved protein of unknown function compare
PP_5053 +0.5 3.1 Protein-export protein SecB compare
PP_1447 +0.5 2.4 conserved protein of unknown function compare
PP_3989 +0.5 1.9 DNA-cytosine methyltransferase compare
PP_0512 +0.5 1.5 hypothetical protein compare
PP_0903 +0.5 2.6 conserved protein of unknown function compare
PP_4980 +0.5 2.4 ATP-dependent RNA helicase compare
PP_3964 +0.5 2.9 transposase compare
PP_1824 +0.5 0.8 Smr domain protein compare
PP_3014 +0.5 1.0 conserved exported protein of unknown function compare
PP_0825 +0.5 1.7 phosphonates import ATP-binding protein compare
PP_5240 +0.5 1.0 Response regulator compare
PP_4904 +0.5 3.1 Flagellar motor rotation protein compare
PP_3763 +0.5 2.0 putative CobF protein compare
PP_4849 +0.5 2.6 putative DnaK protein compare
PP_2181 +0.5 1.5 Transcriptional regulator, Cro/CI family compare
PP_2848 +0.5 1.4 urease accessory protein compare
PP_4386 +0.5 2.1 flagellar basal-body rod protein FlgF compare
PP_3679 +0.5 2.2 conserved protein of unknown function compare
PP_4697 +0.5 1.3 poly(A) polymerase compare
PP_0294 +0.5 2.6 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_0978 +0.5 1.5 conserved protein of unknown function compare
PP_1573 +0.5 2.3 putative Major tail protein compare
PP_2144 +0.5 1.8 Transcriptional regulator, TetR family compare
PP_1828 +0.5 1.6 conserved protein of unknown function compare
PP_0425 +0.5 1.9 conserved protein of unknown function compare
PP_1935 +0.5 1.2 Transcriptional regulator, Cro/CI family compare
PP_1048 +0.5 1.2 putative protein secretion protein for export compare
PP_3110 +0.5 1.0 protein of unknown function compare
PP_4470 +0.5 1.3 putative transcriptional regulator (Arc domain-containing) compare
PP_4391 +0.5 3.0 flagellar basal-body rod protein FlgB compare
PP_2556 +0.5 2.3 Chromate transporter compare
PP_4985 +0.5 2.5 16S rRNA m3U1498 methyltransferase compare
PP_4390 +0.5 3.3 flagellar basal-body rod protein FlgC compare
PP_1218 +0.5 1.4 putative acyl-CoA thioesterase compare
PP_2689 +0.5 2.5 putative Endoribonuclease compare
PP_0313 +0.5 1.8 putative electron transfer flavoprotein beta subunit compare
PP_3412 +0.5 2.1 DNA-binding response regulator, LuxR family compare
PP_1956 +0.5 2.6 conserved exported protein of unknown function compare
PP_1455 +0.5 1.3 conserved protein of unknown function compare
PP_1635 +0.5 1.3 DNA-binding response regulator compare
PP_0113 +0.5 2.2 methionine ABC transporter, permease protein compare
PP_1055 +0.5 0.6 Type II secretion pathway protein GspN compare
PP_1480 +0.5 1.6 conserved protein of unknown function compare
PP_4945 +0.5 2.4 23S rRNA m(6)A2030 methyltransferase compare
PP_5084 +0.5 3.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0189 +0.5 1.9 putative heme biosynthesis protein compare
PP_3589 +0.5 1.6 serine:H+ symport permease, threonine-insensitive compare
PP_2759 +0.5 0.8 ribose ABC transporter - ATP-binding subunit compare
PP_3055 +0.5 1.9 Pyocin R2_PP, tail formation protein compare
PP_3907 +0.5 1.7 conserved protein of unknown function compare
PP_2574 +0.5 2.3 Transcriptional regulator, LysR family compare
PP_1364 +0.5 2.9 conserved exported protein of unknown function compare
PP_2029 +0.5 1.2 von Willebrand factor type A domain protein compare
PP_3028 +0.5 2.0 conserved protein of unknown function compare
PP_5646 +0.5 3.2 protein of unknown function compare
PP_2889 +0.5 2.1 putative Transmembrane regulator PrtR compare
PP_2720 +0.5 0.8 conserved protein of unknown function compare
PP_0166 +0.5 3.6 HlyD family secretion protein compare
PP_2526 +0.5 1.0 conserved membrane protein of unknown function compare
PP_4385 +0.5 2.6 flagellar basal-body rod protein FlgG compare
PP_5586 +0.5 1.2 exported protein of unknown function compare
PP_5430 +0.5 1.4 protein of unknown function compare
PP_4361 +0.5 3.1 Flagellar hook-length control protein FliK compare
PP_2950 +0.5 1.4 conserved protein of unknown function compare
PP_3265 +0.5 1.5 putative phosphohydrolase of unknown function compare
PP_1071 +0.5 2.4 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3685 +0.5 1.3 conserved protein of unknown function compare
PP_3292 +0.5 2.2 conserved membrane protein of unknown function compare
PP_1067 +0.5 2.5 Sensor histidine kinase compare
PP_1112 +0.5 2.9 conserved membrane protein of unknown function compare
PP_1109 +0.5 3.4 Transcriptional regulator, GntR family compare
PP_3519 +0.5 0.6 putative Lipoprotein compare
PP_3625 +0.4 1.1 Transporter, LysE family compare
PP_2055 +0.4 1.7 putative isomerase compare
PP_2871 +0.4 2.5 Class II aldolase/adducin domain protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms