Experiment set20IT001 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.4 -5.1 Indole-3-glycerol phosphate synthase compare
PP_2168 -6.1 -11.8 Transaldolase compare
PP_1986 -6.1 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.8 -10.8 3-isopropylmalate dehydrogenase compare
PP_5098 -5.5 -9.6 methionine biosynthesis protein MetW compare
PP_2217 -5.4 -5.0 enoyl-CoA hydratase compare
PP_5097 -5.3 -14.5 homoserine O-acetyltransferase compare
PP_3511 -5.2 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_2371 -5.1 -8.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1826 -5.0 -4.1 Hydrolase, isochorismatase family compare
PP_4678 -5.0 -13.8 Ketol-acid reductoisomerase compare
PP_0967 -5.0 -11.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -5.0 -14.0 Argininosuccinate synthase compare
PP_0417 -4.8 -15.4 Anthranilate synthase component 1 compare
PP_5128 -4.7 -8.8 Dihydroxy-acid dehydratase compare
PP_0184 -4.7 -8.0 Argininosuccinate lyase compare
PP_1079 -4.6 -7.6 Ornithine carbamoyltransferase compare
PP_0083 -4.6 -9.2 tryptophan synthase beta chain compare
PP_0082 -4.5 -8.0 tryptophan synthase alpha chain compare
PP_0289 -4.5 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -4.4 -7.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -4.3 -14.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4804 -4.2 -2.9 RlpA-like lipoprotein compare
PP_5289 -4.2 -4.6 Acetylglutamate kinase compare
PP_0966 -4.1 -9.4 Histidinol dehydrogenase compare
PP_4696 -3.9 -7.0 Nitrogen regulation protein NR(I) compare
PP_2327 -3.9 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1985 -3.9 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0293 -3.9 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -3.8 -8.5 phosphoserine phosphatase compare
PP_1025 -3.8 -11.5 2-isopropylmalate synthase compare
PP_4902 -3.7 -3.6 Oligoribonuclease compare
PP_0292 -3.7 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2001 -3.7 -7.9 O-succinylhomoserine sulfhydrylase compare
PP_0965 -3.5 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4364 -3.4 -3.5 putative Anti-sigma F factor antagonist compare
PP_0421 -3.2 -6.5 Anthranilate phosphoribosyltransferase compare
PP_5014 -3.2 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_4099 -3.2 -29.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1995 -3.2 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1898 -3.2 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_5347 -3.2 -8.2 pyruvate carboxylase subunit A compare
PP_3999 -3.2 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1650 -3.1 -19.0 Sensor protein GacS compare
PP_0290 -3.1 -5.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1022 -3.1 -6.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5015 -3.1 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5303 -3.1 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0164 -3.1 -6.2 conserved protein of unknown function compare
PP_1231 -3.0 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2402 -3.0 -3.7 putative Sensor histidine kinase compare
PP_4890 -3.0 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -2.9 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5348 -2.9 -5.7 Transcriptional regulator, LysR family compare
PP_2328 -2.8 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_4994 -2.7 -3.9 conserved protein of unknown function compare
PP_1362 -2.7 -4.6 pyruvate kinase II compare
PP_3417 -2.7 -4.8 D-gluconate transporter compare
PP_0888 -2.7 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_0291 -2.6 -2.5 conserved protein of unknown function compare
PP_4785 -2.5 -6.9 conserved exported protein of unknown function compare
PP_5217 -2.4 -7.6 Polyphosphate kinase compare
PP_5346 -2.4 -5.3 pyruvate carboxylase subunit B compare
PP_0630 -2.4 -1.5 DNA gyrase inhibitor YacG compare
PP_0735 -2.4 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_0962 -2.3 -2.3 toluene-tolerance protein compare
PP_1468 -2.2 -3.1 Tyrosine recombinase XerD compare
PP_0566 -2.2 -1.6 translation-related factor compare
PP_4693 -2.2 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_4977 -2.1 -6.9 5,10-methylenetetrahydrofolate reductase compare
PP_4122 -2.1 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0362 -2.1 -7.2 Biotin synthase compare
PP_0775 -2.0 -2.4 conserved protein of unknown function compare
PP_5216 -2.0 -1.4 exopolyphosphatase compare
PP_0855 -2.0 -2.9 conserved protein of unknown function compare
PP_0363 -1.9 -7.6 8-amino-7-oxononanoate synthase compare
PP_2370 -1.9 -2.5 conserved protein of unknown function compare
PP_0914 -1.9 -7.6 GGDEF domain protein compare
PP_0420 -1.8 -3.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4964 -1.8 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0653 -1.8 -1.6 conserved protein of unknown function compare
PP_5155 -1.8 -2.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0393 -1.8 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2378 -1.8 -2.7 Fe/S biogenesis protein NfuA compare
PP_1673 -1.8 -5.1 cobyrinate a,c-diamide synthase compare
PP_4124 -1.8 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_4787 -1.8 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4340 -1.7 -2.8 response regulator for chemotactic signal transduction compare
PP_1672 -1.7 -4.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4695 -1.7 -7.1 Sensory box histidine kinase compare
PP_1656 -1.7 -7.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_2375 -1.7 -8.6 cobalamin-dependent methionine synthase compare
PP_0364 -1.7 -4.0 pimeloyl-[acp] methyl ester esterase compare
PP_0366 -1.7 -4.6 dethiobiotin synthetase compare
PP_1678 -1.6 -3.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0365 -1.6 -5.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1764 -1.6 -2.3 Phosphoglycolate phosphatase 2 compare
PP_3035 -1.6 -2.5 conserved protein of unknown function compare
PP_0122 -1.6 -3.0 conserved exported protein of unknown function compare
PP_1632 -1.6 -2.0 conserved protein of unknown function compare
PP_3649 -1.6 -2.5 Transcriptional regulator, GntR family compare
PP_5054 -1.6 -1.7 glutaredoxin 3 compare
PP_3637 -1.6 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3892 -1.5 -1.4 conserved protein of unknown function compare
PP_1676 -1.5 -4.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4984 -1.5 -6.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4738 -1.5 -1.4 conserved exported protein of unknown function compare
PP_1493 -1.5 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4830 -1.5 -3.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_5583 -1.5 -1.9 conserved protein of unknown function compare
PP_1655 -1.4 -3.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1011 -1.4 -6.7 glucokinase compare
PP_2568 -1.4 -1.3 Ring-cleaving dioxygenase compare
PP_0593 -1.4 -1.0 putative ribosome-binding factor compare
PP_0801 -1.4 -1.2 conserved exported protein of unknown function compare
PP_2044 -1.3 -1.7 conserved inner membrane protein of unknown function compare
PP_4131 -1.3 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_1304 -1.3 -6.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1681 -1.3 -5.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5203 -1.3 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_1664 -1.3 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4045 -1.3 -2.0 conserved protein of unknown function compare
PP_0949 -1.3 -3.1 putative ATP-binding protein UPF0042 compare
PP_0958 -1.2 -3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_4121 -1.2 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1675 -1.2 -4.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0948 -1.2 -1.5 Phosphocarrier protein HPr compare
PP_1679 -1.2 -3.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1739 -1.2 -3.1 conserved membrane protein of unknown function compare
PP_1017 -1.2 -3.6 mannose/glucose ABC transporter, permease protein compare
PP_3715 -1.2 -1.9 Muconate cycloisomerase 1 compare
PP_4782 -1.2 -2.4 Phosphomethylpyrimidine kinase compare
PP_3508 -1.2 -3.4 Protein CobW compare
PP_3034 -1.2 -2.2 putative Regulator protein compare
PP_1654 -1.2 -2.3 cysteine synthase B compare
PP_2785 -1.2 -3.5 conserved exported protein of unknown function compare
PP_4874 -1.2 -0.8 50S ribosomal protein L9 compare
PP_1018 -1.2 -3.3 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5083 -1.2 -2.9 putative Type IV pili biogenesis protein PilM compare
PP_1912 -1.1 -2.5 Phosphate acyltransferase compare
PP_0086 -1.1 -0.7 conserved protein of unknown function compare
PP_4701 -1.1 -0.9 glucose-6-phosphate isomerase compare
PP_4826 -1.1 -3.0 Precorrin-3B C17-methyltransferase compare
PP_4681 -1.1 -1.9 conserved protein of unknown function compare
PP_4832 -1.1 -1.7 Precorrin-6x reductase compare
PP_5090 -1.1 -0.6 putative cell division protein compare
PP_4130 -1.1 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1016 -1.1 -4.7 mannose/glucose ABC transporter, permease protein compare
PP_4546 -1.1 -2.9 ATP-dependent helicase HrpA compare
PP_1002 -1.1 -2.8 arginine/ornithine antiporter compare
PP_2929 -1.1 -5.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3507 -1.1 -5.5 Aerobic cobaltochelatase subunit CobN compare
PP_0434 -1.1 -2.3 Anhydro-N-acetylmuramic acid kinase compare
PP_4699 -1.1 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1534 -1.1 -3.0 conserved protein of unknown function compare
PP_1026 -1.0 -1.8 Peptidase, M23/M37 family compare
PP_5423 -1.0 -1.1 conserved membrane protein of unknown function compare
PP_1054 -1.0 -1.4 Type II secretion pathway protein XcpZ compare
PP_2302 -1.0 -2.2 DNA-binding, ATP-dependent protease compare
PP_1142 -1.0 -0.9 conserved protein of unknown function compare
PP_1012 -1.0 -4.6 DNA-binding response regulator compare
PP_0640 -1.0 -1.8 conserved protein of unknown function compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_3002 -1.0 -2.0 shikimate dehydrogenase-related enzyme compare
PP_4560 -1.0 -1.7 putative Ribonuclease BN compare
PP_3346 -1.0 -1.4 Nickel transporter ATP-binding protein compare
PP_t10 -1.0 -1.3 tRNA-Pro compare
PP_2229 -1.0 -2.1 putative K(+)/H(+) antiporter subunit C compare
PP_4528 -1.0 -1.6 conserved protein of unknown function compare
PP_1186 -1.0 -1.1 two component system DNA-binding transcriptional dual regulator compare
PP_1131 -1.0 -3.4 outer membrane lipoprotein compare
PP_5644 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_0787 -1.0 -1.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0152 -0.9 -1.8 conserved exported protein of unknown function compare
PP_0834 -0.9 -0.6 Sec translocation complex subunit YajC compare
PP_2373 -0.9 -1.8 conserved protein of unknown function compare
PP_0789 -0.9 -2.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2032 -0.9 -3.2 putative ATPase compare
PP_0719 -0.9 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1293 -0.9 -1.6 molybdopterin synthase small subunit compare
PP_4156 -0.9 -2.2 Transcriptional regulator, LysR family compare
PP_4925 -0.9 -2.2 conserved protein of unknown function compare
PP_1734 -0.9 -1.8 Probable septum site-determining protein MinC compare
PP_3110 -0.9 -1.3 protein of unknown function compare
PP_3506 -0.9 -1.7 Magnesium chelatase, subunit ChII compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_2681 -0.9 -0.9 coenzyme PQQ synthesis protein D compare
PP_2225 -0.9 -2.7 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_2163 -0.9 -3.2 VacJ lipoprotein compare
PP_0368 -0.9 -5.6 putative Acyl-CoA dehydrogenase compare
PP_2504 -0.9 -1.9 putative tautomerase K2 compare
PP_2152 -0.9 -1.9 glycerophosphoryl diester phosphodiesterase compare
PP_0377 -0.9 -1.0 coenzyme PQQ synthesis protein D compare
PP_4895 -0.9 -1.8 tRNA dimethylallyltransferase compare
PP_2585 -0.9 -2.9 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PP_2442 -0.9 -0.9 conserved protein of unknown function, DUF480 family compare
PP_1015 -0.9 -4.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5114 -0.9 -2.0 putative adenine methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms