Experiment set1S97 for Escherichia coli ECOR27

Compare to:

Bas09

200 most important genes:

  gene name fitness t score description  
NOLOHH_06715 wecA -4.7 -12.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
NOLOHH_07565 rfaL -4.4 -3.1 O-antigen ligase RfaL compare
NOLOHH_07555 rfaJ -4.2 -2.9 glucosyltransferase compare
NOLOHH_15730 -4.1 -3.9 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
NOLOHH_07560 rfaB -3.8 -3.7 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
NOLOHH_17440 astE -2.8 -1.9 succinylglutamate desuccinylase compare
NOLOHH_20250 ymiC -2.8 -1.9 Protein YmiC compare
NOLOHH_23145 galE -2.6 -2.5 UDP-glucose 4-epimerase GalE compare
NOLOHH_07545 waaO -2.3 -1.5 lipopolysaccharide 3-alpha-galactosyltransferase compare
NOLOHH_06665 wzyE -2.2 -4.9 ECA oligosaccharide polymerase compare
NOLOHH_12545 recA -2.2 -2.4 recombinase RecA compare
NOLOHH_18990 atoD -2.2 -2.7 succinyl-CoA--3-ketoacid-CoA transferase compare
NOLOHH_06675 wzxE -2.2 -3.7 lipid III flippase WzxE compare
NOLOHH_23480 pgm -2.1 -2.4 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_23485 seqA -2.1 -1.3 replication initiation negative regulator SeqA compare
NOLOHH_06520 -2.0 -1.8 DUF3289 domain-containing protein compare
NOLOHH_07535 rfaG -1.9 -4.2 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_17705 ydiO -1.8 -2.2 acyl-CoA dehydrogenase compare
NOLOHH_15585 pphC -1.8 -2.7 Serine/threonine-protein phosphatase 3 compare
NOLOHH_13415 guaA -1.8 -1.6 glutamine-hydrolyzing GMP synthase compare
NOLOHH_14490 nuoH -1.8 -3.3 NADH-quinone oxidoreductase subunit NuoH compare
NOLOHH_07125 -1.7 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_14500 nuoJ -1.7 -2.8 NADH-quinone oxidoreductase subunit J compare
NOLOHH_20460 galU -1.7 -1.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NOLOHH_15160 yohP -1.7 -1.6 protein YohP compare
NOLOHH_20915 phoP -1.7 -1.8 two-component system response regulator PhoP compare
NOLOHH_06395 rfaH -1.7 -6.0 transcription/translation regulatory transformer protein RfaH compare
NOLOHH_15110 mglA -1.6 -1.9 galactose/methyl galactoside ABC transporter ATP-binding protein MglA compare
NOLOHH_18185 ydgI -1.6 -2.4 Putative arginine/ornithine antiporter compare
NOLOHH_23250 tolR -1.6 -2.3 colicin uptake protein TolR compare
NOLOHH_19455 paaC -1.6 -1.9 3-hydroxyacyl-CoA dehydrogenase PaaC compare
NOLOHH_20845 pdeG -1.6 -1.2 putative cyclic di-GMP phosphodiesterase PdeG compare
NOLOHH_19520 -1.6 -1.4 YnbE family lipoprotein compare
NOLOHH_20895 nudJ -1.6 -1.5 phosphatase NudJ compare
NOLOHH_16505 ftnB -1.5 -1.4 non-heme ferritin-like protein compare
NOLOHH_06530 corA -1.5 -2.2 magnesium/cobalt transporter CorA compare
NOLOHH_04525 miaA -1.5 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_13055 rseA -1.5 -1.3 anti-sigma-E factor RseA compare
NOLOHH_20550 chaC -1.5 -1.6 glutathione-specific gamma-glutamylcyclotransferase compare
NOLOHH_23315 sucA -1.5 -1.3 2-oxoglutarate dehydrogenase E1 component compare
NOLOHH_09400 Thr_trna -1.4 -1.5 tRNA-Thr(ggt) compare
NOLOHH_14480 nuoF -1.4 -4.0 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_13070 rseC -1.4 -2.7 SoxR-reducing system protein RseC compare
NOLOHH_02175 yncI -1.4 -1.8 ISAs1 family transposase compare
NOLOHH_08720 glpD -1.4 -4.0 glycerol-3-phosphate dehydrogenase compare
NOLOHH_14200 sixA -1.4 -1.6 phosphohistidine phosphatase SixA compare
NOLOHH_17835 -1.3 -1.2 Ferredoxin compare
NOLOHH_03190 apaH -1.3 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_09835 obgE -1.3 -1.2 GTPase ObgE compare
NOLOHH_11790 yqeH -1.3 -2.4 Uncharacterized protein YqeH compare
NOLOHH_22635 ybiA -1.3 -2.4 N-glycosidase YbiA compare
NOLOHH_11495 xerD -1.3 -1.3 site-specific tyrosine recombinase XerD compare
NOLOHH_19515 ydbL -1.3 -1.8 Uncharacterized protein YdbL compare
NOLOHH_18730 marC -1.3 -1.3 NAAT family transporter MarC compare
NOLOHH_19485 paaB -1.3 -1.1 1,2-phenylacetyl-CoA epoxidase subunit B compare
NOLOHH_18115 hdhA -1.3 -1.3 7-alpha-hydroxysteroid dehydrogenase compare
NOLOHH_04085 rraB -1.3 -2.1 ribonuclease E inhibitor RraB compare
NOLOHH_09695 arcB -1.3 -2.4 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_18050 rsxE -1.3 -1.1 electron transport complex subunit RsxE compare
NOLOHH_15040 yeiL -1.3 -1.7 Regulatory protein YeiL compare
NOLOHH_15350 rcnR -1.3 -1.1 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
NOLOHH_17840 ydhU -1.2 -1.4 Putative cytochrome YdhU compare
NOLOHH_03360 nhaA -1.2 -1.9 Na+/H+ antiporter NhaA compare
NOLOHH_12165 -1.2 -1.1 LemA family compare
NOLOHH_06110 -1.2 -1.5 hypothetical protein compare
NOLOHH_20455 hns -1.2 -1.8 DNA-binding transcriptional regulator H-NS compare
NOLOHH_01270 clpP -1.2 -1.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_00940 -1.2 -1.1 RHS repeat protein compare
NOLOHH_24235 -1.2 -1.1 conjugal transfer protein TraM compare
NOLOHH_17185 dgcP -1.2 -2.6 diguanylate cyclase DgcP compare
NOLOHH_24505 -1.2 -1.9 type II secretion protein F compare
NOLOHH_12805 rnfH -1.2 -1.6 RnfH family protein compare
NOLOHH_17270 yeaC -1.2 -1.1 Uncharacterized protein YeaC compare
NOLOHH_19535 hslJ -1.2 -1.0 heat shock protein HslJ compare
NOLOHH_17810 pykF -1.2 -1.6 pyruvate kinase PykF compare
NOLOHH_16025 pocR -1.2 -1.6 regulatory protein PocR compare
NOLOHH_17755 menI -1.2 -1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
NOLOHH_06250 hemN -1.2 -5.2 oxygen-independent coproporphyrinogen III oxidase compare
NOLOHH_06550 xerC -1.2 -0.7 tyrosine recombinase XerC compare
NOLOHH_00445 -1.2 -1.1 peptidyl-arginine deiminase compare
NOLOHH_11490 fldB -1.1 -3.9 flavodoxin FldB compare
NOLOHH_13115 shoB -1.1 -1.2 Small toxic protein ShoB compare
NOLOHH_13585 -1.1 -1.4 hypothetical protein compare
NOLOHH_04470 yjfJ -1.1 -2.3 Uncharacterized protein YjfJ compare
NOLOHH_04005 Leu_trna -1.1 -1.4 tRNA-Leu(caa) compare
NOLOHH_20905 hflD -1.1 -1.1 high frequency lysogenization protein HflD compare
NOLOHH_06385 fre -1.1 -5.1 NAD(P)H-flavin reductase compare
NOLOHH_20440 ychT -1.1 -0.9 Protein YchT compare
NOLOHH_20110 puuB -1.1 -1.8 gamma-glutamylputrescine oxidase compare
NOLOHH_17065 pdeD -1.1 -2.1 putative cyclic di-GMP phosphodiesterase PdeD compare
NOLOHH_20785 ycgL -1.1 -1.5 Protein YcgL compare
NOLOHH_17815 fumD -1.1 -1.8 fumarate hydratase FumD compare
NOLOHH_24805 -1.1 -2.0 hypothetical protein compare
NOLOHH_21315 yceK -1.1 -1.3 YceK/YidQ family lipoprotein compare
NOLOHH_17845 ydhT -1.1 -1.7 protein YdhT compare
NOLOHH_13390 bamB -1.1 -3.1 outer membrane protein assembly factor BamB compare
NOLOHH_05830 metJ -1.1 -1.1 met regulon transcriptional regulator MetJ compare
NOLOHH_17400 ydjZ -1.1 -1.2 TVP38/TMEM64 family inner membrane protein YdjZ compare
NOLOHH_19420 ydbD -1.1 -1.2 Uncharacterized protein YdbD compare
NOLOHH_19330 ydcJ -1.1 -1.2 Uncharacterized protein YdcJ compare
NOLOHH_01380 pgpA -1.1 -0.9 phosphatidylglycerophosphatase A compare
NOLOHH_14475 nuoE -1.1 -1.4 NADH-quinone oxidoreductase subunit NuoE compare
NOLOHH_21360 csgA -1.1 -2.2 curlin major subunit CsgA compare
NOLOHH_20195 yciZ -1.1 -1.5 UPF0509 protein YciZ compare
NOLOHH_10290 exuR -1.1 -3.8 transcriptional regulator ExuR compare
NOLOHH_18955 ddpX -1.0 -1.0 D-alanyl-D-alanine dipeptidase compare
NOLOHH_20375 tonB -1.0 -1.6 TonB system transport protein TonB compare
NOLOHH_05815 metL -1.0 -6.7 bifunctional aspartate kinase/homoserine dehydrogenase II compare
NOLOHH_23825 -1.0 -1.9 citrate lyase acyl carrier protein 1 compare
NOLOHH_00050 -1.0 -1.3 hypothetical protein compare
NOLOHH_23980 fepE -1.0 -1.9 LPS O-antigen length regulator compare
NOLOHH_23245 tolA -1.0 -2.4 cell envelope integrity protein TolA compare
NOLOHH_15735 galF -1.0 -2.3 UTP--glucose-1-phosphate uridylyltransferase GalF compare
NOLOHH_01645 frmR -1.0 -1.7 formaldehyde-responsive transcriptional repressor FrmR compare
NOLOHH_11360 yqfE -1.0 -1.4 Putative protein YqfE compare
NOLOHH_18245 mlc -1.0 -0.8 DNA-binding transcriptional repressor Mlc compare
NOLOHH_23045 -1.0 -2.1 hypothetical protein compare
NOLOHH_20180 yciW -1.0 -2.4 Uncharacterized protein YciW compare
NOLOHH_11785 -1.0 -1.3 hypothetical protein compare
NOLOHH_09645 nanR -1.0 -2.5 transcriptional regulator NanR compare
NOLOHH_05490 hupA -1.0 -1.0 DNA-binding protein HU-alpha compare
NOLOHH_23025 -1.0 -3.8 DNA recombinase compare
NOLOHH_04460 -1.0 -1.3 DUF2491 domain-containing protein compare
NOLOHH_00625 ylcG -1.0 -2.9 Uncharacterized protein YlcG compare
NOLOHH_23160 galM -1.0 -1.9 galactose-1-epimerase compare
NOLOHH_09590 argR -1.0 -2.2 transcriptional regulator ArgR compare
NOLOHH_15995 pduD -1.0 -1.4 propanediol dehydratase compare
NOLOHH_06220 typA -1.0 -6.2 ribosome-dependent GTPase TypA compare
NOLOHH_18975 dppD -1.0 -1.2 ABC transporter ATP-binding protein compare
NOLOHH_14470 nuoC -1.0 -2.5 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_15145 yohK -1.0 -2.5 CidB/LrgB family autolysis modulator compare
NOLOHH_24675 finO -0.9 -3.4 Fertility inhibition protein compare
NOLOHH_04620 frdD -0.9 -2.5 fumarate reductase subunit FrdD compare
NOLOHH_00240 -0.9 -1.5 Entry exclusion protein compare
NOLOHH_20480 purU -0.9 -2.2 formyltetrahydrofolate deformylase compare
NOLOHH_17950 -0.9 -1.3 Lactoylglutathione lyase compare
NOLOHH_01255 lon_P403L -0.9 -3.7 Lon protease compare
NOLOHH_07540 rfaP -0.9 -3.0 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_16325 fliJ -0.9 -1.2 flagella biosynthesis chaperone FliJ compare
NOLOHH_15650 wcaB -0.9 -2.2 colanic acid biosynthesis acetyltransferase WcaB compare
NOLOHH_20865 bluF -0.9 -1.2 blue light-responsive regulator BluF compare
NOLOHH_03170 surA -0.9 -1.8 peptidylprolyl isomerase SurA compare
NOLOHH_15990 pduE -0.9 -1.9 propanediol dehydratase small subunit PduE compare
NOLOHH_16360 yedF -0.9 -1.3 sulfurtransferase-like selenium metabolism protein YedF compare
NOLOHH_18070 rsxB -0.9 -0.9 electron transport complex subunit RsxB compare
NOLOHH_15100 galS -0.9 -2.1 HTH-type transcriptional regulator GalS compare
NOLOHH_02640 -0.9 -1.6 Protein YadX compare
NOLOHH_13075 lepA -0.9 -1.7 translation elongation factor 4 compare
NOLOHH_14340 ubiX -0.9 -0.9 flavin prenyltransferase UbiX compare
NOLOHH_02485 rnhB -0.9 -1.5 ribonuclease HII compare
NOLOHH_16635 yecM -0.9 -1.3 VOC family protein compare
NOLOHH_19435 paaX -0.9 -0.9 phenylacetic acid degradation operon negative regulatory protein PaaX compare
NOLOHH_18060 rsxD -0.9 -1.4 electron transport complex subunit RsxD compare
NOLOHH_15950 pduO -0.9 -1.9 two-domain cob(I)yrinic acid a,c-diamide adenosyltransferase PduO compare
NOLOHH_05695 sthA -0.9 -2.8 Si-specific NAD(P)(+) transhydrogenase compare
NOLOHH_13240 hcaC -0.9 -1.4 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit compare
NOLOHH_17255 yeaD -0.9 -1.3 Putative glucose-6-phosphate 1-epimerase compare
NOLOHH_07575 rfaF -0.9 -0.6 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_13035 srmB -0.9 -3.4 ATP-dependent RNA helicase SrmB compare
NOLOHH_19840 -0.9 -2.1 exonuclease VIII compare
NOLOHH_14455 -0.8 -0.9 hypothetical protein compare
NOLOHH_17300 ydjG -0.8 -1.8 NADH-dependent methylglyoxal reductase compare
NOLOHH_06540 uvrD -0.8 -5.5 DNA helicase II compare
NOLOHH_14495 nuoI -0.8 -1.5 NADH-quinone oxidoreductase subunit NuoI compare
NOLOHH_22335 ybjN -0.8 -1.3 Uncharacterized protein YbjN compare
NOLOHH_18885 ydeP -0.8 -1.3 acid resistance putative oxidoreductase YdeP compare
NOLOHH_19780 -0.8 -0.7 hypothetical protein compare
NOLOHH_21145 rluC -0.8 -2.7 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
NOLOHH_03030 cra -0.8 -2.5 catabolite repressor/activator compare
NOLOHH_20710 nhaP2 -0.8 -1.5 potassium/proton antiporter compare
NOLOHH_13630 ypfN -0.8 -0.9 UPF0370 protein YpfN compare
NOLOHH_09905 nusA -0.8 -2.0 Transcription termination/antitermination protein NusA compare
NOLOHH_15245 yehR -0.8 -1.9 Uncharacterized lipoprotein YehR compare
NOLOHH_17955 nemA -0.8 -1.8 N-ethylmaleimide reductase compare
NOLOHH_23100 ybhD -0.8 -1.9 Uncharacterized HTH-type transcriptional regulator YbhD compare
NOLOHH_16095 -0.8 -1.6 integrase arm-type DNA-binding domain-containing protein compare
NOLOHH_18735 ydeA -0.8 -2.0 L-arabinose MFS transporter compare
NOLOHH_16580 tap -0.8 -1.9 methyl-accepting chemotaxis protein IV compare
NOLOHH_04510 hflK -0.8 -1.9 FtsH protease activity modulator HflK compare
NOLOHH_02620 yadS -0.8 -1.8 UPF0126 inner membrane protein YadS compare
NOLOHH_20425 -0.8 -1.1 hypothetical protein compare
NOLOHH_21095 fabF -0.8 -0.8 beta-ketoacyl-ACP synthase II compare
NOLOHH_17775 sufB -0.8 -1.6 Fe-S cluster assembly protein SufB compare
NOLOHH_16870 yebF -0.8 -1.2 Protein YebF compare
NOLOHH_20205 osmB -0.8 -0.6 osmotically-inducible lipoprotein OsmB compare
NOLOHH_18035 dtpA -0.8 -1.3 dipeptide/tripeptide permease DtpA compare
NOLOHH_23975 fepC -0.8 -1.8 ferrienterobactin ABC transporter ATPase compare
NOLOHH_08375 pitA -0.8 -2.2 inorganic phosphate transporter PitA compare
NOLOHH_07835 yiaL -0.8 -1.2 Protein YiaL compare
NOLOHH_00385 -0.8 -1.2 hypothetical protein compare
NOLOHH_20940 potB -0.8 -1.0 spermidine/putrescine ABC transporter permease PotB compare
NOLOHH_20510 narH -0.8 -1.3 nitrate reductase subunit beta compare
NOLOHH_21190 flgE -0.7 -2.1 flagellar hook protein FlgE compare
NOLOHH_24810 traV -0.7 -0.9 type IV conjugative transfer system lipoprotein TraV compare
NOLOHH_00605 essD -0.7 -1.3 phage lysis protein EssD compare
NOLOHH_22710 ybhL -0.7 -2.1 Inner membrane protein YbhL compare
NOLOHH_12715 yqaE -0.7 -1.9 UPF0057 membrane protein YqaE compare
NOLOHH_04915 phnH -0.7 -2.9 phosphonate C-P lyase system protein PhnH compare
NOLOHH_02825 acnB -0.7 -0.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
NOLOHH_09355 aroE -0.7 -2.5 shikimate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in phage experiments

For phage MOI 10 across organisms