Experiment set1S85 for Methylophilus sp. DMC18

Compare to:

D-Glucose and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF1638 -2.6 -1.8 Putative glucose-6-phosphate 1-epimerase compare
GFF1946 -2.6 -2.8 hypothetical protein compare
GFF1302 -2.4 -2.3 Trigger factor compare
GFF2748 -2.4 -2.2 Bifunctional PGK/TIM compare
GFF2313 -2.4 -5.8 hypothetical protein compare
GFF1749 -2.4 -3.5 Cytochrome c biogenesis protein CcsA compare
GFF1246 -2.2 -8.0 hypothetical protein compare
GFF2746 -2.2 -3.8 Fructose-1,6-bisphosphatase class 1 compare
GFF2276 -2.2 -19.6 Efflux pump membrane transporter BepE compare
GFF2275 -2.1 -15.5 Toluene efflux pump outer membrane protein TtgF compare
GFF1305 -2.1 -2.8 Lon protease compare
GFF2762 -2.0 -5.0 Maltodextrin phosphorylase compare
GFF2277 -2.0 -15.9 Efflux pump periplasmic linker BepD compare
GFF1245 -1.9 -10.1 Glucose-1-phosphate adenylyltransferase compare
GFF290 -1.8 -2.4 hypothetical protein compare
GFF1247 -1.8 -3.7 4-alpha-glucanotransferase compare
GFF1727 -1.8 -2.9 hypothetical protein compare
GFF1248 -1.8 -5.8 N-acetyl-D-glucosamine kinase compare
GFF690 -1.8 -3.9 hypothetical protein compare
GFF615 -1.7 -3.7 Peroxide operon regulator compare
GFF2326 -1.7 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF2175 -1.7 -2.8 hypothetical protein compare
GFF291 -1.7 -2.2 hypothetical protein compare
GFF680 -1.7 -5.6 hypothetical protein compare
GFF2442 -1.7 -3.0 hypothetical protein compare
GFF2126 -1.6 -2.4 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
GFF1503 -1.6 -2.1 hypothetical protein compare
GFF2310 -1.6 -3.2 Glycine cleavage system H protein compare
GFF1195 -1.6 -4.5 Formyltransferase/hydrolase complex subunit D compare
GFF691 -1.6 -2.9 hypothetical protein compare
GFF229 -1.6 -2.5 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase compare
GFF2602 -1.6 -4.6 Glutamate racemase compare
GFF2266 -1.5 -3.5 RNase adapter protein RapZ compare
GFF858 -1.5 -3.1 Thiamine-phosphate synthase compare
GFF1194 -1.5 -8.0 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF2105 -1.5 -2.6 tRNA modification GTPase MnmE compare
GFF1966 -1.5 -1.9 hypothetical protein compare
GFF589 -1.5 -3.8 hypothetical protein compare
GFF981 -1.5 -2.3 Protein SphX compare
GFF1124 -1.5 -5.0 Sugar transporter SemiSWEET compare
GFF2177 -1.5 -6.7 Octanoyltransferase compare
GFF1685 -1.5 -2.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
GFF360 -1.5 -3.6 RecBCD enzyme subunit RecB compare
GFF2027 -1.5 -4.1 hypothetical protein compare
GFF1193 -1.4 -6.6 hypothetical protein compare
GFF1294 -1.4 -6.0 hypothetical protein compare
GFF361 -1.4 -2.2 ATP-dependent helicase/deoxyribonuclease subunit B compare
GFF2323 -1.4 -3.0 putative cystine transporter YijE compare
GFF2024 -1.4 -4.3 DNA-binding transcriptional regulator NtrC compare
GFF1231 -1.4 -6.9 hypothetical protein compare
GFF1296 -1.4 -5.8 hypothetical protein compare
GFF1196 -1.4 -6.7 Formyltransferase/hydrolase complex Fhc subunit C compare
GFF2324 -1.4 -2.8 Transcriptional regulatory protein PmpR compare
GFF2176 -1.4 -3.4 Lipoyl synthase compare
GFF2023 -1.4 -4.4 Sensory histidine kinase/phosphatase NtrB compare
GFF2696 -1.4 -8.5 Adenosine kinase compare
GFF480 -1.3 -5.8 hypothetical protein compare
GFF2174 -1.3 -4.1 Glutathione synthetase compare
GFF2843 -1.3 -2.2 Diacylglycerol kinase compare
GFF685 -1.3 -3.8 hypothetical protein compare
GFF1668 -1.3 -3.6 hypothetical protein compare
GFF321 -1.3 -4.4 Amylosucrase compare
GFF1542 -1.3 -2.5 hypothetical protein compare
GFF1050 -1.3 -2.7 15-cis-phytoene synthase compare
GFF2735 -1.3 -4.6 Elongation factor 4 compare
GFF674 -1.3 -5.2 Phosphoenolpyruvate synthase regulatory protein compare
GFF293 -1.3 -3.2 hypothetical protein compare
GFF891 -1.3 -3.0 hypothetical protein compare
GFF474 -1.3 -5.4 NADP-dependent malic enzyme compare
GFF1058 -1.2 -6.5 hypothetical protein compare
GFF678 -1.2 -6.1 hypothetical protein compare
GFF1904 -1.2 -4.1 Ribosome-binding ATPase YchF compare
GFF2322 -1.2 -2.8 hypothetical protein compare
GFF2667 -1.2 -5.3 Thermostable monoacylglycerol lipase compare
GFF1647 -1.2 -5.6 HTH-type transcriptional regulator TtgR compare
GFF994 -1.2 -8.8 Acetyl-coenzyme A synthetase compare
GFF2578 -1.2 -2.3 putative glycosyltransferase compare
GFF1514 -1.1 -2.5 Cytosol aminopeptidase compare
GFF2278 -1.1 -2.0 hypothetical protein compare
GFF2337 -1.1 -1.7 hypothetical protein compare
GFF2569 -1.1 -4.9 hypothetical protein compare
GFF2487 -1.1 -6.9 Cyclopropane-fatty-acyl-phospholipid synthase compare
GFF2000 -1.1 -4.7 hypothetical protein compare
GFF264 -1.1 -5.5 N-acetylmuramate/N-acetylglucosamine kinase compare
GFF1052 -1.1 -5.1 S-methyl-5'-thioinosine phosphorylase compare
GFF473 -1.1 -3.8 putative HTH-type transcriptional regulator YurK compare
GFF478 -1.1 -5.7 Succinate dehydrogenase iron-sulfur subunit compare
GFF2327 -1.1 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF620 -1.0 -3.0 Exoribonuclease 2 compare
GFF807 -1.0 -2.2 Cytochrome subunit of sulfide dehydrogenase compare
GFF1293 -1.0 -2.9 hypothetical protein compare
GFF2283 -1.0 -2.7 Beta-barrel assembly-enhancing protease compare
GFF1123 -1.0 -8.1 UvrABC system protein B compare
GFF472 -1.0 -3.7 (3S)-malyl-CoA thioesterase compare
GFF88 -1.0 -2.3 Response regulator UvrY compare
GFF1435 -1.0 -1.8 hypothetical protein compare
GFF2663 -1.0 -2.6 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase compare
GFF2624 -1.0 -3.7 Cytochrome c oxidase assembly protein CtaG compare
GFF1213 -0.9 -2.3 Ribosomal large subunit pseudouridine synthase D compare
GFF689 -0.9 -1.5 hypothetical protein compare
GFF2325 -0.9 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
GFF1704 -0.9 -2.0 hypothetical protein compare
GFF712 -0.9 -2.8 LL-diaminopimelate aminotransferase compare
GFF477 -0.9 -6.6 Succinate dehydrogenase flavoprotein subunit compare
GFF1648 -0.9 -3.9 Multidrug efflux pump subunit AcrA compare
GFF2832 -0.9 -2.4 Polyribonucleotide nucleotidyltransferase compare
GFF1866 -0.9 -1.6 Biopolymer transport protein ExbD compare
GFF580 -0.9 -3.3 dTDP-glucose 4,6-dehydratase compare
GFF2595 -0.9 -4.9 putative HTH-type transcriptional regulator YxaF compare
GFF1292 -0.9 -3.9 hypothetical protein compare
GFF1304 -0.9 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF392 -0.9 -2.0 hypothetical protein compare
GFF2162 -0.9 -3.7 hypothetical protein compare
GFF1318 -0.9 -5.9 hypothetical protein compare
GFF2796 -0.9 -3.0 Carboxymethylenebutenolidase compare
GFF330 -0.9 -4.4 Soluble pyridine nucleotide transhydrogenase compare
GFF1805 -0.9 -3.5 HTH-type transcriptional repressor ComR compare
GFF292 -0.9 -1.8 hypothetical protein compare
GFF1999 -0.9 -2.6 hypothetical protein compare
GFF770 -0.9 -2.4 hypothetical protein compare
GFF475 -0.9 -4.2 Succinate dehydrogenase cytochrome b556 subunit compare
GFF1086 -0.9 -4.1 hypothetical protein compare
GFF476 -0.9 -2.6 hypothetical protein compare
GFF901 -0.9 -4.8 Low affinity potassium transport system protein kup compare
GFF800 -0.8 -6.5 Sensor histidine kinase RcsC compare
GFF164 -0.8 -2.0 hypothetical protein compare
GFF90 -0.8 -1.5 hypothetical protein compare
GFF1168 -0.8 -1.3 hypothetical protein compare
GFF2265 -0.8 -2.2 PTS system mannose-specific EIIAB component compare
GFF1650 -0.8 -3.0 Outer membrane protein OprM compare
GFF1282 -0.7 -4.2 GTP-binding protein TypA/BipA compare
GFF2606 -0.7 -4.4 Thymidylate kinase compare
GFF1649 -0.7 -4.4 Efflux pump membrane transporter BepE compare
GFF2664 -0.7 -4.0 Ornithine aminotransferase compare
GFF2312 -0.7 -1.4 hypothetical protein compare
GFF1451 -0.7 -1.9 hypothetical protein compare
GFF2666 -0.7 -3.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
GFF654 -0.7 -2.9 tRNA pseudouridine synthase A compare
GFF2178 -0.7 -3.2 hypothetical protein compare
GFF1301 -0.7 -2.3 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF378 -0.7 -4.4 L-fucose-proton symporter compare
GFF924 -0.7 -2.3 Beta-hexosaminidase compare
GFF799 -0.7 -2.3 hypothetical protein compare
GFF1191 -0.7 -2.0 Dual-specificity RNA methyltransferase RlmN compare
GFF688 -0.7 -1.8 hypothetical protein compare
GFF419 -0.7 -1.1 hypothetical protein compare
GFF1350 -0.7 -4.7 hypothetical protein compare
GFF382 -0.7 -4.7 hypothetical protein compare
GFF197 -0.7 -1.6 hypothetical protein compare
GFF2568 -0.7 -3.6 Cell division coordinator CpoB compare
GFF2566 -0.7 -3.0 Arginine biosynthesis bifunctional protein ArgJ compare
GFF1233 -0.7 -4.6 5-methylthioadenosine/S-adenosylhomocysteine deaminase compare
GFF668 -0.7 -1.8 Coenzyme PQQ synthesis protein B compare
GFF1744 -0.6 -2.5 Queuine tRNA-ribosyltransferase compare
GFF192 -0.6 -1.7 hypothetical protein compare
GFF983 -0.6 -3.4 hypothetical protein compare
GFF2339 -0.6 -1.3 tRNA (guanine-N(1)-)-methyltransferase compare
GFF1626 -0.6 -1.1 50S ribosomal protein L33 compare
GFF660 -0.6 -3.4 Colicin V production protein compare
GFF671 -0.6 -1.5 PqqA peptide cyclase compare
GFF1788 -0.6 -4.4 Chaperone protein ClpB compare
GFF2691 -0.6 -4.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF1409 -0.6 -2.5 hypothetical protein compare
GFF1455 -0.6 -2.5 hypothetical protein compare
GFF130 -0.6 -3.0 Molybdate-binding protein ModA compare
GFF2625 -0.6 -3.8 Cytochrome c oxidase subunit 3 compare
GFF1126 -0.6 -1.4 Hypoxanthine-guanine phosphoribosyltransferase compare
GFF651 -0.6 -1.6 hypothetical protein compare
GFF2733 -0.6 -2.7 Periplasmic serine endoprotease DegP compare
GFF451 -0.6 -2.8 hypothetical protein compare
GFF2157 -0.6 -1.1 hypothetical protein compare
GFF1535 -0.6 -1.9 Tyrosine recombinase XerC compare
GFF2292 -0.6 -3.4 hypothetical protein compare
GFF156 -0.6 -1.6 Ferredoxin-1 compare
GFF2436 -0.6 -3.3 GTP 3',8-cyclase compare
GFF1658 -0.6 -2.4 DNA polymerase I compare
GFF1328 -0.6 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
GFF1785 -0.6 -3.6 Cyclic di-GMP phosphodiesterase compare
GFF131 -0.6 -2.7 Sulfate transport system permease protein CysT compare
GFF2435 -0.5 -1.1 Molybdenum cofactor guanylyltransferase compare
GFF2457 -0.5 -1.1 Transcriptional regulator MraZ compare
GFF161 -0.5 -1.4 hypothetical protein compare
GFF2622 -0.5 -4.2 Cytochrome c oxidase subunit 1 compare
GFF989 -0.5 -2.4 hypothetical protein compare
GFF1170 -0.5 -1.2 Small ribosomal subunit biogenesis GTPase RsgA compare
GFF2133 -0.5 -1.6 hypothetical protein compare
GFF1036 -0.5 -3.3 Lon protease compare
GFF861 -0.5 -3.3 Ribonuclease G compare
GFF1907 -0.5 -0.8 50S ribosomal protein L25 compare
GFF925 -0.5 -2.8 hypothetical protein compare
GFF1285 -0.5 -3.8 hypothetical protein compare
GFF2695 -0.5 -1.1 Outer membrane lipoprotein pcp compare
GFF535 -0.5 -2.0 hypothetical protein compare
GFF2665 -0.5 -3.1 hypothetical protein compare
GFF2620 -0.5 -1.9 hypothetical protein compare
GFF1262 -0.5 -1.8 hypothetical protein compare
GFF2571 -0.5 -1.4 Peptidyl-prolyl cis-trans isomerase cyp18 compare
GFF1180 -0.5 -3.0 hypothetical protein compare
GFF2790 -0.5 -1.3 hypothetical protein compare
GFF1056 -0.5 -3.1 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare


Specific Phenotypes

None in this experiment

For Methylophilus sp. DMC18 in carbon source experiments

For carbon source D-Glucose across organisms