Experiment set1S83 for Methylophilus sp. DMC18

Compare to:

Methanol and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF2578 -3.0 -2.8 putative glycosyltransferase compare
GFF2339 -2.9 -3.3 tRNA (guanine-N(1)-)-methyltransferase compare
GFF2313 -2.8 -6.1 hypothetical protein compare
GFF620 -2.7 -3.2 Exoribonuclease 2 compare
GFF2310 -2.5 -3.8 Glycine cleavage system H protein compare
GFF1638 -2.5 -2.4 Putative glucose-6-phosphate 1-epimerase compare
GFF2312 -2.4 -3.6 hypothetical protein compare
GFF2790 -2.4 -3.6 hypothetical protein compare
GFF293 -2.4 -3.2 hypothetical protein compare
GFF2175 -2.3 -2.7 hypothetical protein compare
GFF2177 -2.3 -8.6 Octanoyltransferase compare
GFF2105 -2.3 -2.6 tRNA modification GTPase MnmE compare
GFF1302 -2.3 -2.2 Trigger factor compare
GFF1191 -2.1 -3.5 Dual-specificity RNA methyltransferase RlmN compare
GFF1727 -2.1 -2.9 hypothetical protein compare
GFF313 -2.1 -2.4 Transcription elongation factor GreA compare
GFF2442 -2.1 -3.3 hypothetical protein compare
GFF330 -2.1 -7.4 Soluble pyridine nucleotide transhydrogenase compare
GFF2323 -2.0 -3.2 putative cystine transporter YijE compare
GFF2602 -2.0 -3.4 Glutamate racemase compare
GFF2748 -1.9 -2.2 Bifunctional PGK/TIM compare
GFF1305 -1.9 -2.5 Lon protease compare
GFF291 -1.9 -2.2 hypothetical protein compare
GFF2327 -1.8 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF712 -1.8 -3.7 LL-diaminopimelate aminotransferase compare
GFF2777 -1.8 -5.1 RNA polymerase sigma-54 factor compare
GFF858 -1.8 -3.1 Thiamine-phosphate synthase compare
GFF688 -1.8 -3.4 hypothetical protein compare
GFF2024 -1.7 -5.0 DNA-binding transcriptional regulator NtrC compare
GFF2566 -1.7 -6.4 Arginine biosynthesis bifunctional protein ArgJ compare
GFF1086 -1.7 -5.9 hypothetical protein compare
GFF229 -1.7 -2.5 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase compare
GFF1966 -1.7 -2.2 hypothetical protein compare
GFF2176 -1.7 -4.3 Lipoyl synthase compare
GFF842 -1.7 -2.4 Regulatory protein RecX compare
GFF767 -1.6 -6.0 Ferredoxin compare
GFF1685 -1.6 -2.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
GFF1628 -1.6 -4.8 Deoxyuridine 5'-triphosphate nucleotidohydrolase compare
GFF2762 -1.6 -4.7 Maltodextrin phosphorylase compare
GFF580 -1.6 -5.7 dTDP-glucose 4,6-dehydratase compare
GFF589 -1.6 -3.4 hypothetical protein compare
GFF1328 -1.6 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
GFF689 -1.5 -2.2 hypothetical protein compare
GFF290 -1.5 -2.2 hypothetical protein compare
GFF1213 -1.5 -3.1 Ribosomal large subunit pseudouridine synthase D compare
GFF1126 -1.5 -2.5 Hypoxanthine-guanine phosphoribosyltransferase compare
GFF1503 -1.4 -2.2 hypothetical protein compare
GFF287 -1.4 -2.1 hypothetical protein compare
GFF691 -1.4 -2.5 hypothetical protein compare
GFF579 -1.4 -5.2 Acetolactate synthase isozyme 3 large subunit compare
GFF2735 -1.4 -4.9 Elongation factor 4 compare
GFF292 -1.4 -2.5 hypothetical protein compare
GFF1170 -1.3 -2.4 Small ribosomal subunit biogenesis GTPase RsgA compare
GFF1904 -1.3 -4.3 Ribosome-binding ATPase YchF compare
GFF1301 -1.3 -3.7 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF1749 -1.3 -3.3 Cytochrome c biogenesis protein CcsA compare
GFF683 -1.3 -3.4 tRNA dimethylallyltransferase compare
GFF2796 -1.3 -4.2 Carboxymethylenebutenolidase compare
GFF2522 -1.2 -1.4 hypothetical protein compare
GFF1744 -1.2 -4.5 Queuine tRNA-ribosyltransferase compare
GFF1626 -1.2 -1.9 50S ribosomal protein L33 compare
GFF690 -1.2 -3.1 hypothetical protein compare
GFF2174 -1.2 -4.3 Glutathione synthetase compare
GFF2126 -1.2 -2.0 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
GFF2023 -1.2 -4.1 Sensory histidine kinase/phosphatase NtrB compare
GFF2324 -1.1 -2.6 Transcriptional regulatory protein PmpR compare
GFF123 -1.1 -2.3 Ferredoxin-like protein FixX compare
GFF2178 -1.1 -4.9 hypothetical protein compare
GFF321 -1.1 -4.2 Amylosucrase compare
GFF281 -1.1 -2.7 Protein InaA compare
GFF1034 -1.1 -2.7 Molybdopterin synthase sulfur carrier subunit compare
GFF1238 -1.1 -2.4 Nucleoid-associated protein YbaB compare
GFF2191 -1.1 -8.1 Phosphomethylpyrimidine synthase compare
GFF357 -1.1 -2.9 hypothetical protein compare
GFF1281 -1.1 -6.1 ATP-dependent RNA helicase RhlE compare
GFF1805 -1.0 -3.9 HTH-type transcriptional repressor ComR compare
GFF2133 -1.0 -2.7 hypothetical protein compare
GFF799 -1.0 -2.9 hypothetical protein compare
GFF1244 -1.0 -4.7 1,4-alpha-glucan branching enzyme GlgB compare
GFF1325 -1.0 -2.9 hypothetical protein compare
GFF676 -1.0 -3.4 hypothetical protein compare
GFF1035 -1.0 -2.6 hypothetical protein compare
GFF2457 -1.0 -1.9 Transcriptional regulator MraZ compare
GFF654 -1.0 -3.7 tRNA pseudouridine synthase A compare
GFF1435 -1.0 -2.2 hypothetical protein compare
GFF924 -1.0 -2.9 Beta-hexosaminidase compare
GFF687 -0.9 -1.8 hypothetical protein compare
GFF2843 -0.9 -1.8 Diacylglycerol kinase compare
GFF1282 -0.9 -4.9 GTP-binding protein TypA/BipA compare
GFF360 -0.9 -2.7 RecBCD enzyme subunit RecB compare
GFF1231 -0.9 -4.9 hypothetical protein compare
GFF1946 -0.9 -1.4 hypothetical protein compare
GFF2334 -0.9 -4.3 Cell division coordinator CpoB compare
GFF685 -0.9 -2.8 hypothetical protein compare
GFF2569 -0.9 -4.1 hypothetical protein compare
GFF1949 -0.9 -2.2 hypothetical protein compare
GFF571 -0.9 -4.8 hypothetical protein compare
GFF2447 -0.9 -3.1 hypothetical protein compare
GFF1293 -0.8 -2.5 hypothetical protein compare
GFF2326 -0.8 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF1193 -0.8 -4.1 hypothetical protein compare
GFF27 -0.8 -1.2 Tol-Pal system protein TolR compare
GFF1194 -0.8 -4.7 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF1322 -0.8 -2.3 Glucose-1-phosphate thymidylyltransferase compare
GFF584 -0.8 -4.9 CDP-glucose 4,6-dehydratase compare
GFF2282 -0.8 -4.5 Cyclic pyranopterin monophosphate synthase compare
GFF2737 -0.8 -2.5 hypothetical protein compare
GFF639 -0.8 -3.2 Malate:quinone oxidoreductase compare
GFF2090 -0.8 -1.9 ATP synthase epsilon chain compare
GFF1451 -0.8 -2.2 hypothetical protein compare
GFF1196 -0.8 -4.2 Formyltransferase/hydrolase complex Fhc subunit C compare
GFF888 -0.8 -2.5 hypothetical protein compare
GFF1693 -0.8 -2.1 Chaperone protein DnaJ compare
GFF339 -0.8 -6.4 Pyruvate dehydrogenase E1 component compare
GFF2342 -0.8 -2.5 Tyrosine recombinase XerD compare
GFF1292 -0.8 -3.2 hypothetical protein compare
GFF2571 -0.8 -1.9 Peptidyl-prolyl cis-trans isomerase cyp18 compare
GFF1133 -0.8 -3.9 putative ABC transporter ATP-binding protein YbiT compare
GFF2276 -0.8 -7.1 Efflux pump membrane transporter BepE compare
GFF2275 -0.8 -6.5 Toluene efflux pump outer membrane protein TtgF compare
GFF938 -0.7 -4.1 Triosephosphate isomerase compare
GFF2738 -0.7 -2.0 Ribonuclease 3 compare
GFF90 -0.7 -1.6 hypothetical protein compare
GFF1639 -0.7 -2.4 hypothetical protein compare
GFF2695 -0.7 -1.5 Outer membrane lipoprotein pcp compare
GFF2746 -0.7 -2.3 Fructose-1,6-bisphosphatase class 1 compare
GFF1491 -0.7 -2.8 hypothetical protein compare
GFF361 -0.7 -1.2 ATP-dependent helicase/deoxyribonuclease subunit B compare
GFF1141 -0.7 -2.0 Persistence and stress-resistance toxin PasT compare
GFF835 -0.7 -2.6 Molybdopterin adenylyltransferase compare
GFF1535 -0.7 -2.1 Tyrosine recombinase XerC compare
GFF49 -0.7 -1.1 hypothetical protein compare
GFF2325 -0.7 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
GFF962 -0.7 -3.1 Cadmium-induced protein CadI compare
GFF2162 -0.7 -2.8 hypothetical protein compare
GFF668 -0.7 -1.9 Coenzyme PQQ synthesis protein B compare
GFF168 -0.7 -1.2 hypothetical protein compare
GFF338 -0.7 -4.7 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
GFF636 -0.7 -2.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
GFF1878 -0.7 -2.7 Protein tas compare
GFF1789 -0.7 -1.7 hypothetical protein compare
GFF1480 -0.7 -5.8 Vitamin B12 transporter BtuB compare
GFF137 -0.7 -1.3 Ferredoxin-3 compare
GFF891 -0.6 -1.7 hypothetical protein compare
GFF214 -0.6 -3.8 Nitrate regulatory protein compare
GFF2436 -0.6 -3.7 GTP 3',8-cyclase compare
GFF88 -0.6 -1.5 Response regulator UvrY compare
GFF770 -0.6 -1.7 hypothetical protein compare
GFF2055 -0.6 -2.5 putative protein YhaZ compare
GFF2277 -0.6 -5.3 Efflux pump periplasmic linker BepD compare
GFF382 -0.6 -4.3 hypothetical protein compare
GFF201 -0.6 -4.2 Periplasmic nitrate reductase compare
GFF901 -0.6 -3.6 Low affinity potassium transport system protein kup compare
GFF678 -0.6 -3.2 hypothetical protein compare
GFF1294 -0.6 -2.9 hypothetical protein compare
GFF2296 -0.6 -2.2 hypothetical protein compare
GFF2358 -0.6 -1.6 hypothetical protein compare
GFF1050 -0.6 -1.3 15-cis-phytoene synthase compare
GFF1728 -0.6 -3.1 Endonuclease III compare
GFF981 -0.6 -1.1 Protein SphX compare
GFF995 -0.6 -2.8 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
GFF2283 -0.6 -1.8 Beta-barrel assembly-enhancing protease compare
GFF1527 -0.6 -1.4 hypothetical protein compare
GFF2795 -0.6 -2.7 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating compare
GFF2054 -0.6 -1.5 hypothetical protein compare
GFF585 -0.6 -3.6 Glucose-1-phosphate cytidylyltransferase compare
GFF1056 -0.6 -3.3 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF453 -0.6 -2.0 NAD(P)H dehydrogenase (quinone) compare
GFF738 -0.6 -1.4 hypothetical protein compare
GFF669 -0.6 -2.1 Pyrroloquinoline-quinone synthase compare
GFF309 -0.6 -2.4 Outer membrane protein assembly factor BamE compare
GFF103 -0.6 -1.9 hypothetical protein compare
GFF489 -0.5 -0.9 Cadmium, cobalt and zinc/H(+)-K(+) antiporter compare
GFF30 -0.5 -1.9 hypothetical protein compare
GFF2260 -0.5 -2.9 hypothetical protein compare
GFF680 -0.5 -1.8 hypothetical protein compare
GFF624 -0.5 -1.5 hypothetical protein compare
GFF130 -0.5 -2.7 Molybdate-binding protein ModA compare
GFF1514 -0.5 -1.4 Cytosol aminopeptidase compare
GFF1558 -0.5 -1.9 DNA-binding transcriptional regulator BolA compare
GFF2824 -0.5 -2.6 Outer membrane protein TolC compare
GFF1924 -0.5 -2.2 hypothetical protein compare
GFF2266 -0.5 -1.7 RNase adapter protein RapZ compare
GFF615 -0.5 -1.4 Peroxide operon regulator compare
GFF67 -0.5 -1.5 hypothetical protein compare
GFF133 -0.5 -1.8 hypothetical protein compare
GFF1246 -0.5 -2.7 hypothetical protein compare
GFF2482 -0.5 -2.6 hypothetical protein compare
GFF2067 -0.5 -2.7 hypothetical protein compare
GFF765 -0.5 -1.4 Ribosomal RNA small subunit methyltransferase D compare
GFF625 -0.5 -2.4 hypothetical protein compare
GFF1128 -0.5 -1.6 hypothetical protein compare
GFF1190 -0.5 -2.6 hypothetical protein compare
GFF1306 -0.5 -1.1 DNA-binding protein HU-beta compare
GFF2137 -0.5 -1.4 dITP/XTP pyrophosphatase compare
GFF1882 -0.5 -1.3 hypothetical protein compare
GFF568 -0.5 -2.1 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
GFF207 -0.5 -2.7 hypothetical protein compare
GFF2568 -0.5 -2.7 Cell division coordinator CpoB compare
GFF57 -0.5 -1.3 Response regulator UvrY compare


Specific Phenotypes

None in this experiment

For Methylophilus sp. DMC18 in carbon source experiments

For carbon source Methanol across organisms