Experiment set1S82 for Azospirillum sp. SherDot2

Compare to:

NL-CCM_agar

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -3.4 -17.2 Pca regulon regulatory protein compare
MPMX19_01884 -3.0 -4.5 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_00530 -2.6 -4.3 Orotate phosphoribosyltransferase compare
MPMX19_02980 -2.4 -3.3 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_04208 -2.4 -4.8 flagellum biosynthesis repressor protein FlbT compare
MPMX19_01304 -2.3 -11.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_00182 -2.3 -3.1 hypothetical protein compare
MPMX19_02657 -2.3 -17.4 Glutamate synthase [NADPH] large chain compare
MPMX19_01084 -2.3 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_00705 -2.2 -3.3 Cell division coordinator CpoB compare
MPMX19_02658 -2.2 -13.1 Glutamate synthase [NADPH] small chain compare
MPMX19_01054 -2.1 -6.5 Aspartate carbamoyltransferase compare
MPMX19_01053 -2.1 -5.1 Dihydroorotase compare
MPMX19_00126 -2.1 -3.2 hypothetical protein compare
MPMX19_00128 -2.1 -12.6 hypothetical protein compare
MPMX19_00260 -2.0 -3.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_05727 -2.0 -8.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_06275 -2.0 -11.7 Argininosuccinate lyase compare
MPMX19_04449 -2.0 -2.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_02981 -1.9 -6.3 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01883 -1.9 -8.1 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_00838 -1.9 -3.6 GTP pyrophosphokinase rsh compare
MPMX19_06277 -1.9 -10.6 hypothetical protein compare
MPMX19_02267 -1.8 -1.7 hypothetical protein compare
MPMX19_05896 -1.8 -2.7 hypothetical protein compare
MPMX19_06230 -1.7 -2.8 hypothetical protein compare
MPMX19_00129 -1.7 -1.6 hypothetical protein compare
MPMX19_05387 -1.6 -3.4 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_05016 -1.6 -2.4 Sensor histidine kinase RcsC compare
MPMX19_03787 -1.6 -1.4 hypothetical protein compare
MPMX19_00266 -1.6 -2.6 hypothetical protein compare
MPMX19_00858 -1.6 -5.3 Flagellar biosynthetic protein FliP compare
MPMX19_00906 -1.6 -10.4 Amidophosphoribosyltransferase compare
MPMX19_01014 -1.5 -5.2 Indole-3-glycerol phosphate synthase compare
MPMX19_02303 -1.5 -2.9 hypothetical protein compare
MPMX19_02668 -1.5 -8.2 RNA polymerase sigma-54 factor 2 compare
MPMX19_01560 -1.4 -2.8 3'-5' exonuclease DinG compare
MPMX19_04218 -1.4 -5.6 Protein phosphatase PrpC compare
MPMX19_03455 -1.4 -2.1 HTH-type transcriptional repressor NagR compare
MPMX19_00005 -1.4 -3.4 hypothetical protein compare
MPMX19_01111 -1.4 -2.3 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_04276 -1.4 -2.8 hypothetical protein compare
MPMX19_04623 -1.4 -4.3 hypothetical protein compare
MPMX19_02675 -1.3 -10.0 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_02268 -1.3 -3.3 hypothetical protein compare
MPMX19_05680 -1.3 -3.8 Cell cycle response regulator CtrA compare
MPMX19_00976 -1.3 -2.4 ATP-dependent RNA helicase RhlE compare
MPMX19_06969 -1.3 -2.4 hypothetical protein compare
MPMX19_01486 -1.3 -7.2 Flagellar L-ring protein compare
MPMX19_04092 -1.2 -5.6 Flagellar motor switch protein FliN compare
MPMX19_02979 -1.2 -3.7 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_04225 -1.2 -3.4 hypothetical protein compare
MPMX19_04694 -1.2 -2.6 Na(+)/H(+) antiporter subunit E1 compare
MPMX19_01015 -1.2 -4.0 Anthranilate phosphoribosyltransferase compare
MPMX19_02202 -1.2 -2.2 hypothetical protein compare
MPMX19_02300 -1.2 -2.9 Transcription elongation factor GreA compare
MPMX19_06044 -1.2 -1.8 hypothetical protein compare
MPMX19_01113 -1.2 -2.2 Adaptive-response sensory-kinase SasA compare
MPMX19_01480 -1.2 -3.8 hypothetical protein compare
MPMX19_03165 -1.2 -2.5 hypothetical protein compare
MPMX19_03450 -1.2 -1.3 hypothetical protein compare
MPMX19_02674 -1.2 -2.0 NADH:quinone reductase compare
MPMX19_05678 -1.1 -5.6 hypothetical protein compare
MPMX19_01630 -1.1 -3.2 Phosphoribosylamine--glycine ligase compare
MPMX19_02207 -1.1 -2.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_00478 -1.1 -2.0 putative protein RP812 compare
MPMX19_05119 -1.1 -7.8 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_04087 -1.1 -2.6 Flagellum site-determining protein YlxH compare
MPMX19_00854 -1.1 -9.1 hypothetical protein compare
MPMX19_04258 -1.1 -3.7 hypothetical protein compare
MPMX19_05438 -1.1 -2.6 hypothetical protein compare
MPMX19_02737 -1.1 -4.6 Tryptophan synthase alpha chain compare
MPMX19_01485 -1.1 -7.3 hypothetical protein compare
MPMX19_01494 -1.1 -6.1 Flagellar P-ring protein compare
MPMX19_04362 -1.0 -1.5 Cytidine deaminase compare
MPMX19_00867 -1.0 -8.1 Flagellar biosynthetic protein FlhB compare
MPMX19_01998 -1.0 -4.2 3-isopropylmalate dehydratase large subunit compare
MPMX19_00795 -1.0 -3.7 Adaptive-response sensory-kinase SasA compare
MPMX19_03196 -1.0 -2.9 hypothetical protein compare
MPMX19_04958 -1.0 -2.0 Methyl-accepting chemotaxis protein compare
MPMX19_06907 -1.0 -2.9 L-talarate/galactarate dehydratase compare
MPMX19_01481 -1.0 -7.6 Flagellar motor switch protein FliM compare
MPMX19_00311 -1.0 -8.5 hypothetical protein compare
MPMX19_04200 -1.0 -5.4 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_02460 -1.0 -8.5 Motility protein A compare
MPMX19_00912 -1.0 -6.7 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
MPMX19_00862 -1.0 -5.9 hypothetical protein compare
MPMX19_03421 -1.0 -2.3 hypothetical protein compare
MPMX19_00236 -1.0 -2.6 HTH-type transcriptional regulator IscR compare
MPMX19_05679 -1.0 -6.3 Flagellum-specific ATP synthase compare
MPMX19_05818 -1.0 -2.0 hypothetical protein compare
MPMX19_00714 -1.0 -5.0 Ferrous-iron efflux pump FieF compare
MPMX19_00504 -1.0 -2.9 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_06253 -1.0 -2.0 hypothetical protein compare
MPMX19_02742 -0.9 -1.5 hypothetical protein compare
MPMX19_03976 -0.9 -3.3 hypothetical protein compare
MPMX19_03586 -0.9 -2.3 HTH-type transcriptional repressor ComR compare
MPMX19_01297 -0.9 -1.7 hypothetical protein compare
MPMX19_04090 -0.9 -5.9 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_06892 -0.9 -2.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01936 -0.9 -7.0 hypothetical protein compare
MPMX19_06009 -0.9 -2.3 hypothetical protein compare
MPMX19_05432 -0.9 -3.1 hypothetical protein compare
MPMX19_01495 -0.9 -1.5 hypothetical protein compare
MPMX19_06821 -0.9 -2.6 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_04204 -0.9 -5.2 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_03924 -0.9 -1.8 hypothetical protein compare
MPMX19_06581 -0.9 -5.6 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_06579 -0.9 -2.3 Carnitine monooxygenase oxygenase subunit compare
MPMX19_00868 -0.9 -7.5 Sensor kinase CckA compare
MPMX19_06508 -0.9 -2.9 Nitrilotriacetate monooxygenase component A compare
MPMX19_04088 -0.9 -3.0 Signal recognition particle 54 kDa protein compare
MPMX19_04222 -0.9 -7.0 hypothetical protein compare
MPMX19_00503 -0.9 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_02234 -0.9 -3.5 hypothetical protein compare
MPMX19_00234 -0.8 -2.3 hypothetical protein compare
MPMX19_04391 -0.8 -4.7 Homoserine O-acetyltransferase compare
MPMX19_04149 -0.8 -1.8 hypothetical protein compare
MPMX19_01720 -0.8 -2.7 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
MPMX19_02736 -0.8 -5.3 Tryptophan synthase beta chain compare
MPMX19_00607 -0.8 -5.5 3-isopropylmalate dehydrogenase compare
MPMX19_01479 -0.8 -3.6 hypothetical protein compare
MPMX19_06001 -0.8 -3.2 hypothetical protein compare
MPMX19_06580 -0.8 -3.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00304 -0.8 -2.1 Phosphatidylcholine synthase compare
MPMX19_06419 -0.8 -2.1 IS110 family transposase ISHne3 compare
MPMX19_01937 -0.8 -5.4 hypothetical protein compare
MPMX19_04198 -0.8 -6.1 hypothetical protein compare
MPMX19_00694 -0.8 -1.9 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_00904 -0.8 -4.7 DNA repair protein RadA compare
MPMX19_01483 -0.8 -5.6 Flagellar basal-body rod protein FlgG compare
MPMX19_06099 -0.8 -5.4 hypothetical protein compare
MPMX19_04000 -0.8 -2.8 Flagellar motor switch protein FliG compare
MPMX19_05207 -0.8 -1.1 Hemolysin secretion protein D, plasmid compare
MPMX19_00813 -0.8 -1.1 HTH-type transcriptional regulator CysL compare
MPMX19_04094 -0.8 -4.9 Flagellar M-ring protein compare
MPMX19_02951 -0.8 -1.6 Deoxyribose-phosphate aldolase 1 compare
MPMX19_00149 -0.8 -3.5 hypothetical protein compare
MPMX19_06506 -0.8 -2.0 hypothetical protein compare
MPMX19_04115 -0.8 -1.5 Sensor histidine kinase RcsC compare
MPMX19_04968 -0.8 -1.9 hypothetical protein compare
MPMX19_05687 -0.8 -3.1 Chemotaxis protein CheW compare
MPMX19_01484 -0.8 -4.0 Flagellar basal-body rod protein FlgG compare
MPMX19_05409 -0.8 -3.4 hypothetical protein compare
MPMX19_01349 -0.8 -5.0 hypothetical protein compare
MPMX19_00142 -0.8 -1.1 hypothetical protein compare
MPMX19_00635 -0.8 -5.4 5,10-methylenetetrahydrofolate reductase compare
MPMX19_05714 -0.8 -4.2 hypothetical protein compare
MPMX19_05719 -0.8 -1.4 hypothetical protein compare
MPMX19_06236 -0.8 -1.6 hypothetical protein compare
MPMX19_01076 -0.8 -1.6 Molybdopterin synthase catalytic subunit compare
MPMX19_00863 -0.8 -3.7 Flagellar basal-body rod protein FlgC compare
MPMX19_03335 -0.8 -1.9 hypothetical protein compare
MPMX19_01777 -0.8 -2.0 2-aminoadipate transaminase compare
MPMX19_02579 -0.8 -1.6 hypothetical protein compare
MPMX19_05070 -0.8 -3.0 hypothetical protein compare
MPMX19_04903 -0.8 -2.4 hypothetical protein compare
MPMX19_05023 -0.7 -1.3 hypothetical protein compare
MPMX19_01545 -0.7 -1.1 Lon protease compare
MPMX19_04577 -0.7 -2.7 putative glycosyltransferase compare
MPMX19_06276 -0.7 -3.1 hypothetical protein compare
MPMX19_05282 -0.7 -2.1 1,3,6,8-tetrahydroxynaphthalene synthase compare
MPMX19_04948 -0.7 -1.5 HTH-type transcriptional regulator GltR compare
MPMX19_04199 -0.7 -4.1 Pseudaminic acid synthase compare
MPMX19_00262 -0.7 -1.2 Thiazole synthase compare
MPMX19_02223 -0.7 -5.3 Ammonia channel compare
MPMX19_00996 -0.7 -3.1 Metalloprotease MmpA compare
MPMX19_04610 -0.7 -1.9 putative enoyl-CoA hydratase 1 compare
MPMX19_04289 -0.7 -3.9 hypothetical protein compare
MPMX19_01497 -0.7 -2.5 hypothetical protein compare
MPMX19_00846 -0.7 -1.3 hypothetical protein compare
MPMX19_02177 -0.7 -2.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_04223 -0.7 -5.7 hypothetical protein compare
MPMX19_01597 -0.7 -1.5 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_03635 -0.7 -1.1 DNA-binding transcriptional activator DecR compare
MPMX19_02511 -0.7 -1.4 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_05872 -0.7 -1.5 Redox-sensitive transcriptional activator SoxR compare
MPMX19_04963 -0.7 -0.9 Cysteine desulfurase IscS compare
MPMX19_01822 -0.7 -3.2 2-isopropylmalate synthase compare
MPMX19_06014 -0.7 -3.8 Histidinol-phosphate aminotransferase compare
MPMX19_01353 -0.7 -1.8 hypothetical protein compare
MPMX19_03907 -0.7 -2.4 Short-chain-enoyl-CoA hydratase compare
MPMX19_05410 -0.7 -4.8 Dipeptide transport system permease protein DppB compare
MPMX19_02815 -0.7 -1.5 2-keto-4-pentenoate hydratase compare
MPMX19_04089 -0.7 -5.5 Flagellar biosynthesis protein FlhA compare
MPMX19_06585 -0.7 -5.9 hypothetical protein compare
MPMX19_05065 -0.7 -1.3 Farnesyl diphosphate synthase compare
MPMX19_02536 -0.7 -1.9 hypothetical protein compare
MPMX19_00851 -0.7 -3.7 hypothetical protein compare
MPMX19_00748 -0.7 -2.4 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_03184 -0.7 -2.8 hypothetical protein compare
MPMX19_03646 -0.7 -2.9 Histidinol-phosphate aminotransferase compare
MPMX19_02607 -0.7 -2.3 hypothetical protein compare
MPMX19_00370 -0.6 -1.8 hypothetical protein compare
MPMX19_01314 -0.6 -2.9 hypothetical protein compare
MPMX19_02646 -0.6 -1.7 hypothetical protein compare
MPMX19_06448 -0.6 -2.6 hypothetical protein compare
MPMX19_02031 -0.6 -1.3 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_06577 -0.6 -4.4 hypothetical protein compare
MPMX19_02973 -0.6 -2.0 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm_agar experiments