Experiment set1S79 for Methylophilus sp. DMC18

Compare to:

D-Glucose and Methanol carbon source

200 most important genes:

  gene name fitness t score description  
GFF2602 -3.3 -5.5 Glutamate racemase compare
GFF2023 -3.0 -3.5 Sensory histidine kinase/phosphatase NtrB compare
GFF2313 -2.8 -5.9 hypothetical protein compare
GFF2777 -2.8 -2.7 RNA polymerase sigma-54 factor compare
GFF2312 -2.7 -3.2 hypothetical protein compare
GFF2024 -2.6 -3.6 DNA-binding transcriptional regulator NtrC compare
GFF1638 -2.6 -1.8 Putative glucose-6-phosphate 1-epimerase compare
GFF858 -2.6 -1.8 Thiamine-phosphate synthase compare
GFF2762 -2.5 -4.1 Maltodextrin phosphorylase compare
GFF2310 -2.4 -3.7 Glycine cleavage system H protein compare
GFF620 -2.1 -3.9 Exoribonuclease 2 compare
GFF1302 -2.1 -2.4 Trigger factor compare
GFF2442 -2.1 -3.1 hypothetical protein compare
GFF2748 -2.1 -2.4 Bifunctional PGK/TIM compare
GFF2323 -2.1 -2.8 putative cystine transporter YijE compare
GFF2175 -2.0 -2.4 hypothetical protein compare
GFF214 -2.0 -8.9 Nitrate regulatory protein compare
GFF1086 -1.9 -6.2 hypothetical protein compare
GFF2339 -1.9 -2.8 tRNA (guanine-N(1)-)-methyltransferase compare
GFF685 -1.9 -4.1 hypothetical protein compare
GFF361 -1.9 -2.5 ATP-dependent helicase/deoxyribonuclease subunit B compare
GFF683 -1.9 -4.2 tRNA dimethylallyltransferase compare
GFF712 -1.9 -4.0 LL-diaminopimelate aminotransferase compare
GFF1305 -1.9 -2.7 Lon protease compare
GFF688 -1.9 -3.6 hypothetical protein compare
GFF981 -1.8 -2.4 Protein SphX compare
GFF1767 -1.8 -2.1 Glutamate 5-kinase compare
GFF580 -1.8 -6.1 dTDP-glucose 4,6-dehydratase compare
GFF330 -1.8 -6.7 Soluble pyridine nucleotide transhydrogenase compare
GFF2746 -1.8 -4.2 Fructose-1,6-bisphosphatase class 1 compare
GFF1191 -1.7 -3.5 Dual-specificity RNA methyltransferase RlmN compare
GFF291 -1.7 -2.2 hypothetical protein compare
GFF293 -1.7 -3.5 hypothetical protein compare
GFF2176 -1.7 -3.7 Lipoyl synthase compare
GFF483 -1.7 -2.9 hypothetical protein compare
GFF208 -1.7 -2.2 Bicarbonate transport ATP-binding protein CmpD compare
GFF1213 -1.7 -3.3 Ribosomal large subunit pseudouridine synthase D compare
GFF2105 -1.7 -2.5 tRNA modification GTPase MnmE compare
GFF691 -1.7 -2.9 hypothetical protein compare
GFF2177 -1.6 -6.9 Octanoyltransferase compare
GFF1503 -1.6 -2.1 hypothetical protein compare
GFF674 -1.6 -5.9 Phosphoenolpyruvate synthase regulatory protein compare
GFF2322 -1.6 -3.3 hypothetical protein compare
GFF2790 -1.6 -3.3 hypothetical protein compare
GFF192 -1.6 -3.2 hypothetical protein compare
GFF229 -1.6 -2.5 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase compare
GFF281 -1.6 -3.4 Protein InaA compare
GFF1328 -1.5 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
GFF2178 -1.5 -5.6 hypothetical protein compare
GFF689 -1.5 -2.3 hypothetical protein compare
GFF2578 -1.5 -2.5 putative glycosyltransferase compare
GFF1535 -1.5 -3.7 Tyrosine recombinase XerC compare
GFF2576 -1.5 -5.5 Phosphate regulon transcriptional regulatory protein PhoB compare
GFF1056 -1.5 -7.4 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF2324 -1.5 -2.8 Transcriptional regulatory protein PmpR compare
GFF589 -1.4 -3.7 hypothetical protein compare
GFF207 -1.4 -6.5 hypothetical protein compare
GFF131 -1.4 -5.6 Sulfate transport system permease protein CysT compare
GFF579 -1.4 -5.7 Acetolactate synthase isozyme 3 large subunit compare
GFF1514 -1.3 -2.8 Cytosol aminopeptidase compare
GFF2735 -1.3 -4.6 Elongation factor 4 compare
GFF2566 -1.3 -5.3 Arginine biosynthesis bifunctional protein ArgJ compare
GFF841 -1.3 -3.7 Protein RecA compare
GFF568 -1.3 -5.0 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
GFF767 -1.3 -5.6 Ferredoxin compare
GFF2435 -1.3 -2.1 Molybdenum cofactor guanylyltransferase compare
GFF1966 -1.3 -1.8 hypothetical protein compare
GFF2325 -1.3 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
GFF2283 -1.3 -3.2 Beta-barrel assembly-enhancing protease compare
GFF2265 -1.3 -3.0 PTS system mannose-specific EIIAB component compare
GFF1170 -1.2 -2.2 Small ribosomal subunit biogenesis GTPase RsgA compare
GFF2126 -1.2 -2.1 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
GFF88 -1.2 -2.7 Response regulator UvrY compare
GFF292 -1.2 -2.4 hypothetical protein compare
GFF2174 -1.2 -3.9 Glutathione synthetase compare
GFF1628 -1.2 -4.1 Deoxyuridine 5'-triphosphate nucleotidohydrolase compare
GFF2282 -1.2 -6.1 Cyclic pyranopterin monophosphate synthase compare
GFF2334 -1.2 -5.0 Cell division coordinator CpoB compare
GFF200 -1.2 -6.9 Nitrite reductase [NAD(P)H] compare
GFF123 -1.2 -2.3 Ferredoxin-like protein FixX compare
GFF2327 -1.2 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF2326 -1.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF2796 -1.1 -3.5 Carboxymethylenebutenolidase compare
GFF1744 -1.1 -4.2 Queuine tRNA-ribosyltransferase compare
GFF1034 -1.1 -2.6 Molybdopterin synthase sulfur carrier subunit compare
GFF1949 -1.1 -2.7 hypothetical protein compare
GFF1190 -1.1 -4.0 hypothetical protein compare
GFF1435 -1.1 -2.4 hypothetical protein compare
GFF57 -1.1 -2.5 Response regulator UvrY compare
GFF2718 -1.1 -6.0 Phosphate regulon sensor protein PhoR compare
GFF2266 -1.1 -2.9 RNase adapter protein RapZ compare
GFF2191 -1.0 -7.5 Phosphomethylpyrimidine synthase compare
GFF1193 -1.0 -5.2 hypothetical protein compare
GFF1050 -1.0 -2.1 15-cis-phytoene synthase compare
GFF1126 -1.0 -2.2 Hypoxanthine-guanine phosphoribosyltransferase compare
GFF1458 -1.0 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
GFF2436 -1.0 -5.4 GTP 3',8-cyclase compare
GFF571 -1.0 -5.4 hypothetical protein compare
GFF687 -1.0 -2.2 hypothetical protein compare
GFF1685 -1.0 -1.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
GFF382 -1.0 -6.5 hypothetical protein compare
GFF1749 -1.0 -2.7 Cytochrome c biogenesis protein CcsA compare
GFF2843 -1.0 -1.8 Diacylglycerol kinase compare
GFF1248 -1.0 -3.9 N-acetyl-D-glucosamine kinase compare
GFF1511 -1.0 -2.8 hypothetical protein compare
GFF313 -0.9 -1.4 Transcription elongation factor GreA compare
GFF1244 -0.9 -4.3 1,4-alpha-glucan branching enzyme GlgB compare
GFF203 -0.9 -5.4 Serine/threonine-protein kinase PknD compare
GFF2695 -0.9 -1.7 Outer membrane lipoprotein pcp compare
GFF321 -0.9 -3.4 Amylosucrase compare
GFF1431 -0.9 -2.2 hypothetical protein compare
GFF338 -0.9 -6.3 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
GFF901 -0.9 -4.8 Low affinity potassium transport system protein kup compare
GFF130 -0.9 -4.1 Molybdate-binding protein ModA compare
GFF201 -0.9 -5.8 Periplasmic nitrate reductase compare
GFF287 -0.9 -1.5 hypothetical protein compare
GFF360 -0.9 -2.3 RecBCD enzyme subunit RecB compare
GFF1301 -0.9 -2.6 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF1727 -0.9 -1.6 hypothetical protein compare
GFF199 -0.8 -1.7 Nitrite reductase (NADH) small subunit compare
GFF1325 -0.8 -2.8 hypothetical protein compare
GFF2022 -0.8 -3.0 hypothetical protein compare
GFF2457 -0.8 -1.6 Transcriptional regulator MraZ compare
GFF1987 -0.8 -1.5 hypothetical protein compare
GFF331 -0.8 -6.1 hypothetical protein compare
GFF864 -0.8 -3.2 Pyridoxal phosphate homeostasis protein compare
GFF1281 -0.8 -5.0 ATP-dependent RNA helicase RhlE compare
GFF680 -0.8 -3.1 hypothetical protein compare
GFF1035 -0.8 -2.3 hypothetical protein compare
GFF1036 -0.8 -4.6 Lon protease compare
GFF2171 -0.8 -2.8 Peptide methionine sulfoxide reductase MsrB compare
GFF156 -0.8 -1.8 Ferredoxin-1 compare
GFF615 -0.8 -2.0 Peroxide operon regulator compare
GFF1491 -0.8 -2.8 hypothetical protein compare
GFF2136 -0.8 -2.7 Ribonuclease PH compare
GFF2434 -0.8 -3.0 Molybdopterin molybdenumtransferase compare
GFF654 -0.8 -3.1 tRNA pseudouridine synthase A compare
GFF1053 -0.7 -2.4 Peptide deformylase compare
GFF1946 -0.7 -1.2 hypothetical protein compare
GFF1194 -0.7 -4.4 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF1246 -0.7 -3.8 hypothetical protein compare
GFF1725 -0.7 -3.4 ECF RNA polymerase sigma factor SigM compare
GFF1134 -0.7 -2.5 Protein DrgA compare
GFF1878 -0.7 -2.9 Protein tas compare
GFF339 -0.7 -6.1 Pyruvate dehydrogenase E1 component compare
GFF2090 -0.7 -1.6 ATP synthase epsilon chain compare
GFF1451 -0.7 -1.8 hypothetical protein compare
GFF1322 -0.7 -2.1 Glucose-1-phosphate thymidylyltransferase compare
GFF1292 -0.7 -2.9 hypothetical protein compare
GFF788 -0.7 -4.7 hypothetical protein compare
GFF1907 -0.7 -1.2 50S ribosomal protein L25 compare
GFF2342 -0.6 -2.1 Tyrosine recombinase XerD compare
GFF1231 -0.6 -3.7 hypothetical protein compare
GFF1196 -0.6 -3.6 Formyltransferase/hydrolase complex Fhc subunit C compare
GFF1855 -0.6 -1.5 hypothetical protein compare
GFF2027 -0.6 -2.2 hypothetical protein compare
GFF678 -0.6 -3.4 hypothetical protein compare
GFF1296 -0.6 -3.1 hypothetical protein compare
GFF132 -0.6 -2.7 Vitamin B12 import ATP-binding protein BtuD compare
GFF888 -0.6 -2.2 hypothetical protein compare
GFF2157 -0.6 -1.2 hypothetical protein compare
GFF1247 -0.6 -1.6 4-alpha-glucanotransferase compare
GFF386 -0.6 -2.0 Adaptive-response sensory-kinase SasA compare
GFF209 -0.6 -2.8 Nitrate import permease protein NrtB compare
GFF2449 -0.6 -2.3 hypothetical protein compare
GFF1282 -0.6 -3.4 GTP-binding protein TypA/BipA compare
GFF1826 -0.6 -1.6 Allophanate hydrolase compare
GFF2737 -0.6 -2.0 hypothetical protein compare
GFF995 -0.6 -3.0 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
GFF938 -0.6 -3.4 Triosephosphate isomerase compare
GFF1639 -0.6 -2.0 hypothetical protein compare
GFF807 -0.6 -1.2 Cytochrome subunit of sulfide dehydrogenase compare
GFF204 -0.6 -3.7 Nitrate transporter compare
GFF407 -0.6 -2.8 hypothetical protein compare
GFF1505 -0.6 -2.2 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF585 -0.6 -3.7 Glucose-1-phosphate cytidylyltransferase compare
GFF835 -0.6 -2.1 Molybdopterin adenylyltransferase compare
GFF668 -0.6 -1.5 Coenzyme PQQ synthesis protein B compare
GFF2658 -0.6 -2.0 GTP pyrophosphokinase compare
GFF1060 -0.5 -2.1 Peroxiredoxin compare
GFF690 -0.5 -1.7 hypothetical protein compare
GFF333 -0.5 -4.9 hypothetical protein compare
GFF2618 -0.5 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
GFF1141 -0.5 -1.7 Persistence and stress-resistance toxin PasT compare
GFF2583 -0.5 -1.3 Nickel and cobalt resistance protein CnrB compare
GFF2311 -0.5 -1.3 hypothetical protein compare
GFF842 -0.5 -1.0 Regulatory protein RecX compare
GFF600 -0.5 -1.9 hypothetical protein compare
GFF103 -0.5 -1.7 hypothetical protein compare
GFF925 -0.5 -2.5 hypothetical protein compare
GFF2842 -0.5 -3.2 putative Fe(2+)-trafficking protein compare
GFF2825 -0.5 -1.6 hypothetical protein compare
GFF351 -0.5 -3.1 Replication-associated recombination protein A compare
GFF2568 -0.5 -2.7 Cell division coordinator CpoB compare
GFF584 -0.5 -3.2 CDP-glucose 4,6-dehydratase compare
GFF684 -0.5 -2.2 hypothetical protein compare
GFF2795 -0.5 -2.2 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating compare
GFF959 -0.5 -1.2 Translation initiation factor IF-1 compare
GFF2440 -0.5 -2.3 Sulfur carrier protein FdhD compare
GFF1306 -0.5 -0.9 DNA-binding protein HU-beta compare


Specific Phenotypes

None in this experiment

For Methylophilus sp. DMC18 in carbon source experiments

For carbon source D-Glucose across organisms