Experiment set1S78 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most important genes:

  gene name fitness t score description  
MPMX19_01495 -2.0 -2.8 hypothetical protein compare
MPMX19_03734 -1.9 -2.8 RutC family protein YjgH compare
MPMX19_06819 -1.8 -3.4 hypothetical protein compare
MPMX19_03806 -1.8 -4.0 hypothetical protein compare
MPMX19_02980 -1.8 -2.6 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_00705 -1.7 -3.3 Cell division coordinator CpoB compare
MPMX19_03722 -1.7 -2.7 hypothetical protein compare
MPMX19_04968 -1.6 -2.8 hypothetical protein compare
MPMX19_01883 -1.6 -7.0 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_01884 -1.6 -3.4 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_04205 -1.5 -4.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_01113 -1.5 -2.4 Adaptive-response sensory-kinase SasA compare
MPMX19_00020 -1.5 -2.2 hypothetical protein compare
MPMX19_02267 -1.5 -1.9 hypothetical protein compare
MPMX19_05680 -1.4 -3.9 Cell cycle response regulator CtrA compare
MPMX19_06777 -1.3 -2.1 hypothetical protein compare
MPMX19_00530 -1.3 -3.2 Orotate phosphoribosyltransferase compare
MPMX19_01499 -1.3 -3.9 hypothetical protein compare
MPMX19_00304 -1.3 -2.8 Phosphatidylcholine synthase compare
MPMX19_04952 -1.2 -2.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04000 -1.2 -3.0 Flagellar motor switch protein FliG compare
MPMX19_05252 -1.2 -2.0 Carbon monoxide dehydrogenase medium chain compare
MPMX19_02207 -1.2 -2.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_00680 -1.2 -2.2 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_00862 -1.2 -6.8 hypothetical protein compare
MPMX19_06743 -1.1 -3.2 Chemotaxis protein CheA compare
MPMX19_06579 -1.1 -2.2 Carnitine monooxygenase oxygenase subunit compare
MPMX19_00260 -1.1 -2.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_06580 -1.1 -4.8 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05727 -1.1 -5.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_00863 -1.1 -5.9 Flagellar basal-body rod protein FlgC compare
MPMX19_01822 -1.1 -4.8 2-isopropylmalate synthase compare
MPMX19_05505 -1.1 -2.3 Leucine-responsive regulatory protein compare
MPMX19_04092 -1.1 -5.2 Flagellar motor switch protein FliN compare
MPMX19_04094 -1.1 -6.9 Flagellar M-ring protein compare
MPMX19_00608 -1.1 -1.2 hypothetical protein compare
MPMX19_04408 -1.1 -2.2 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
MPMX19_04208 -1.0 -2.5 flagellum biosynthesis repressor protein FlbT compare
MPMX19_05687 -1.0 -4.0 Chemotaxis protein CheW compare
MPMX19_01585 -1.0 -2.4 Zinc uptake regulation protein compare
MPMX19_04326 -1.0 -3.1 Beta-hexosaminidase compare
MPMX19_00858 -1.0 -3.8 Flagellar biosynthetic protein FliP compare
MPMX19_00128 -1.0 -6.9 hypothetical protein compare
MPMX19_04087 -1.0 -2.8 Flagellum site-determining protein YlxH compare
MPMX19_01939 -1.0 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_04207 -1.0 -2.9 hypothetical protein compare
MPMX19_01483 -1.0 -6.5 Flagellar basal-body rod protein FlgG compare
MPMX19_01493 -1.0 -2.8 Flagellar assembly protein FliX compare
MPMX19_01376 -1.0 -2.3 hypothetical protein compare
MPMX19_04276 -1.0 -1.9 hypothetical protein compare
MPMX19_04222 -0.9 -7.7 hypothetical protein compare
MPMX19_01605 -0.9 -5.5 Chemotaxis protein CheY compare
MPMX19_00182 -0.9 -2.0 hypothetical protein compare
MPMX19_01201 -0.9 -2.3 hypothetical protein compare
MPMX19_04010 -0.9 -2.2 Isoaspartyl peptidase compare
MPMX19_03157 -0.9 -1.4 hypothetical protein compare
MPMX19_04492 -0.9 -2.5 hypothetical protein compare
MPMX19_01777 -0.9 -2.1 2-aminoadipate transaminase compare
MPMX19_00795 -0.9 -3.6 Adaptive-response sensory-kinase SasA compare
MPMX19_00061 -0.9 -2.4 L-lysine 2,3-aminomutase compare
MPMX19_05872 -0.9 -2.1 Redox-sensitive transcriptional activator SoxR compare
MPMX19_01283 -0.9 -2.4 hypothetical protein compare
MPMX19_05044 -0.9 -1.6 hypothetical protein compare
MPMX19_05901 -0.9 -2.4 Motility protein B compare
MPMX19_00050 -0.9 -3.2 Pyridoxal phosphate homeostasis protein compare
MPMX19_01054 -0.9 -3.5 Aspartate carbamoyltransferase compare
MPMX19_02601 -0.9 -5.0 hypothetical protein compare
MPMX19_00854 -0.9 -7.6 hypothetical protein compare
MPMX19_01400 -0.9 -1.8 hypothetical protein compare
MPMX19_00609 -0.9 -2.7 Chemotaxis protein CheY compare
MPMX19_04898 -0.9 -2.2 Transcriptional regulatory protein LnrK compare
MPMX19_01479 -0.9 -3.6 hypothetical protein compare
MPMX19_04225 -0.9 -3.5 hypothetical protein compare
MPMX19_04392 -0.9 -2.0 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_01494 -0.9 -5.4 Flagellar P-ring protein compare
MPMX19_04258 -0.9 -2.3 hypothetical protein compare
MPMX19_02664 -0.9 -1.3 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_01497 -0.9 -2.8 hypothetical protein compare
MPMX19_03747 -0.9 -2.9 Potassium-transporting ATPase KdpC subunit compare
MPMX19_03295 -0.9 -2.0 HTH-type transcriptional regulator McbR compare
MPMX19_06746 -0.8 -1.3 Chemotaxis protein CheW compare
MPMX19_06437 -0.8 -1.5 DNA-invertase hin compare
MPMX19_06979 -0.8 -2.1 hypothetical protein compare
MPMX19_00262 -0.8 -1.6 Thiazole synthase compare
MPMX19_02668 -0.8 -5.3 RNA polymerase sigma-54 factor 2 compare
MPMX19_03320 -0.8 -1.8 hypothetical protein compare
MPMX19_04090 -0.8 -5.4 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_00976 -0.8 -1.7 ATP-dependent RNA helicase RhlE compare
MPMX19_01481 -0.8 -6.2 Flagellar motor switch protein FliM compare
MPMX19_06545 -0.8 -6.6 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_05714 -0.8 -4.5 hypothetical protein compare
MPMX19_01235 -0.8 -1.7 hypothetical protein compare
MPMX19_04223 -0.8 -6.5 hypothetical protein compare
MPMX19_02759 -0.8 -3.0 Xanthine phosphoribosyltransferase compare
MPMX19_03575 -0.8 -2.0 HTH-type transcriptional regulator NimR compare
MPMX19_01247 -0.8 -1.8 Transcriptional regulatory protein DegU compare
MPMX19_01053 -0.8 -2.4 Dihydroorotase compare
MPMX19_03642 -0.8 -1.7 hypothetical protein compare
MPMX19_01718 -0.8 -1.6 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_04212 -0.8 -6.0 Photosystem I assembly protein Ycf3 compare
MPMX19_06202 -0.8 -0.9 hypothetical protein compare
MPMX19_03335 -0.8 -1.3 hypothetical protein compare
MPMX19_01304 -0.8 -5.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_00794 -0.8 -2.4 Transcriptional activator protein CopR compare
MPMX19_06315 -0.8 -1.7 ISL3 family transposase ISAli18 compare
MPMX19_06546 -0.8 -1.4 hypothetical protein compare
MPMX19_02303 -0.8 -1.8 hypothetical protein compare
MPMX19_01937 -0.8 -5.1 hypothetical protein compare
MPMX19_04089 -0.8 -6.1 Flagellar biosynthesis protein FlhA compare
MPMX19_04200 -0.8 -4.3 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_00236 -0.8 -2.2 HTH-type transcriptional regulator IscR compare
MPMX19_06569 -0.8 -1.9 hypothetical protein compare
MPMX19_03196 -0.8 -2.2 hypothetical protein compare
MPMX19_02268 -0.8 -2.6 hypothetical protein compare
MPMX19_00849 -0.8 -1.6 hypothetical protein compare
MPMX19_01297 -0.7 -1.5 hypothetical protein compare
MPMX19_03054 -0.7 -3.0 putative ABC transporter permease protein NosY compare
MPMX19_00748 -0.7 -2.5 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_05177 -0.7 -2.1 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_00906 -0.7 -5.5 Amidophosphoribosyltransferase compare
MPMX19_03184 -0.7 -3.0 hypothetical protein compare
MPMX19_03069 -0.7 -1.0 hypothetical protein compare
MPMX19_06581 -0.7 -4.7 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_02234 -0.7 -3.2 hypothetical protein compare
MPMX19_00100 -0.7 -2.9 hypothetical protein compare
MPMX19_05679 -0.7 -4.9 Flagellum-specific ATP synthase compare
MPMX19_00867 -0.7 -5.9 Flagellar biosynthetic protein FlhB compare
MPMX19_04058 -0.7 -2.0 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_06547 -0.7 -3.1 hypothetical protein compare
MPMX19_02973 -0.7 -2.1 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare
MPMX19_02171 -0.7 -3.5 putative ABC transporter ATP-binding protein YejF compare
MPMX19_04204 -0.7 -4.2 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_04198 -0.7 -5.5 hypothetical protein compare
MPMX19_04647 -0.7 -1.7 hypothetical protein compare
MPMX19_01486 -0.7 -4.4 Flagellar L-ring protein compare
MPMX19_02092 -0.7 -2.2 hypothetical protein compare
MPMX19_04199 -0.7 -4.2 Pseudaminic acid synthase compare
MPMX19_00933 -0.7 -2.2 hypothetical protein compare
MPMX19_00576 -0.7 -1.5 hypothetical protein compare
MPMX19_01654 -0.7 -4.5 HTH-type transcriptional regulator IscR compare
MPMX19_02981 -0.7 -3.0 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01630 -0.7 -2.3 Phosphoribosylamine--glycine ligase compare
MPMX19_04958 -0.7 -1.0 Methyl-accepting chemotaxis protein compare
MPMX19_04171 -0.7 -1.6 16S ribosomal RNA compare
MPMX19_01249 -0.7 -1.1 Periplasmic serine endoprotease DegP compare
MPMX19_05438 -0.7 -1.2 hypothetical protein compare
MPMX19_04224 -0.7 -6.1 hypothetical protein compare
MPMX19_02486 -0.7 -2.5 Chemotaxis protein CheY compare
MPMX19_02950 -0.7 -2.1 Deoxyribose operon repressor compare
MPMX19_00311 -0.7 -6.0 hypothetical protein compare
MPMX19_00846 -0.7 -1.1 hypothetical protein compare
MPMX19_06544 -0.7 -5.2 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_01652 -0.7 -2.0 hypothetical protein compare
MPMX19_01084 -0.7 -2.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_06508 -0.7 -1.8 Nitrilotriacetate monooxygenase component A compare
MPMX19_05144 -0.7 -1.0 hypothetical protein compare
MPMX19_01936 -0.7 -5.2 hypothetical protein compare
MPMX19_06426 -0.7 -2.4 hypothetical protein compare
MPMX19_02736 -0.7 -4.4 Tryptophan synthase beta chain compare
MPMX19_06260 -0.7 -2.5 hypothetical protein compare
MPMX19_01401 -0.7 -1.4 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_02460 -0.7 -5.7 Motility protein A compare
MPMX19_01482 -0.7 -4.6 hypothetical protein compare
MPMX19_01704 -0.7 -1.5 hypothetical protein compare
MPMX19_03649 -0.6 -3.9 Trehalose transport system permease protein SugA compare
MPMX19_03423 -0.6 -2.2 hypothetical protein compare
MPMX19_03653 -0.6 -3.1 Mannitol 2-dehydrogenase compare
MPMX19_02737 -0.6 -3.4 Tryptophan synthase alpha chain compare
MPMX19_02657 -0.6 -5.7 Glutamate synthase [NADPH] large chain compare
MPMX19_00996 -0.6 -2.7 Metalloprotease MmpA compare
MPMX19_02742 -0.6 -1.1 hypothetical protein compare
MPMX19_06926 -0.6 -2.1 hypothetical protein compare
MPMX19_00866 -0.6 -3.3 Flagellar biosynthetic protein FliR compare
MPMX19_05725 -0.6 -1.2 hypothetical protein compare
MPMX19_01014 -0.6 -2.2 Indole-3-glycerol phosphate synthase compare
MPMX19_02834 -0.6 -2.4 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_01365 -0.6 -1.4 hypothetical protein compare
MPMX19_04692 -0.6 -1.6 hypothetical protein compare
MPMX19_02658 -0.6 -4.7 Glutamate synthase [NADPH] small chain compare
MPMX19_03646 -0.6 -2.7 Histidinol-phosphate aminotransferase compare
MPMX19_02275 -0.6 -1.9 hypothetical protein compare
MPMX19_06808 -0.6 -1.2 HTH-type transcriptional regulator DmlR compare
MPMX19_03117 -0.6 -3.4 Catabolite control protein A compare
MPMX19_03790 -0.6 -1.5 hypothetical protein compare
MPMX19_00447 -0.6 -2.0 hypothetical protein compare
MPMX19_02551 -0.6 -1.8 hypothetical protein compare
MPMX19_00297 -0.6 -0.8 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_04622 -0.6 -3.9 hypothetical protein compare
MPMX19_01998 -0.6 -2.8 3-isopropylmalate dehydratase large subunit compare
MPMX19_01912 -0.6 -1.9 Acetyl-CoA acetyltransferase compare
MPMX19_04325 -0.6 -2.8 hypothetical protein compare
MPMX19_05387 -0.6 -1.6 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_06786 -0.6 -1.7 Formate dehydrogenase, mitochondrial compare
MPMX19_02511 -0.6 -1.2 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_06577 -0.6 -4.4 hypothetical protein compare
MPMX19_06417 -0.6 -2.5 Transcriptional regulatory protein OmpR compare
MPMX19_01485 -0.6 -3.9 hypothetical protein compare
MPMX19_05896 -0.6 -1.3 hypothetical protein compare
MPMX19_01911 -0.6 -4.3 Acetoacetyl-CoA reductase compare
MPMX19_03276 -0.6 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments