Experiment set1S78 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_04726 +1.1 4.3 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06197 +1.1 2.1 hypothetical protein compare
MPMX19_06044 +1.0 2.7 hypothetical protein compare
MPMX19_06519 +1.0 2.6 HTH-type transcriptional repressor NagR compare
MPMX19_01875 +1.0 4.9 hypothetical protein compare
MPMX19_05470 +1.0 4.3 hypothetical protein compare
MPMX19_05207 +0.9 1.7 Hemolysin secretion protein D, plasmid compare
MPMX19_06193 +0.9 2.7 Flagellar hook-basal body complex protein FliE compare
MPMX19_01864 +0.9 2.4 Regulatory protein AtoC compare
MPMX19_05358 +0.8 2.3 hypothetical protein compare
MPMX19_00208 +0.8 2.2 hypothetical protein compare
MPMX19_00206 +0.7 5.7 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_01243 +0.7 1.3 hypothetical protein compare
MPMX19_04687 +0.7 1.8 Atrazine chlorohydrolase compare
MPMX19_03939 +0.7 2.6 Enoyl-CoA-hydratase compare
MPMX19_05195 +0.7 3.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06488 +0.7 2.2 Taurine-binding periplasmic protein compare
MPMX19_03039 +0.7 2.0 Cyclic AMP receptor protein compare
MPMX19_03085 +0.7 1.8 Hydrogen peroxide-inducible genes activator compare
MPMX19_01766 +0.7 4.0 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_06106 +0.7 3.5 Bacteriohemerythrin compare
MPMX19_06028 +0.6 2.2 hypothetical protein compare
MPMX19_06230 +0.6 1.5 hypothetical protein compare
MPMX19_04508 +0.6 2.4 Phosphoglycolate phosphatase compare
MPMX19_00207 +0.6 3.3 hypothetical protein compare
MPMX19_06853 +0.6 1.9 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_06776 +0.6 2.4 hypothetical protein compare
MPMX19_05193 +0.6 1.0 Taurine-binding periplasmic protein compare
MPMX19_03123 +0.6 1.3 Citrate lyase acyl carrier protein compare
MPMX19_03262 +0.6 2.0 putative HTH-type transcriptional repressor ExuR compare
MPMX19_06223 +0.6 2.6 HTH-type transcriptional regulator GbpR compare
MPMX19_00544 +0.6 1.3 hypothetical protein compare
MPMX19_00475 +0.6 1.6 hypothetical protein compare
MPMX19_06933 +0.6 1.3 Manganese transport system ATP-binding protein MntB compare
MPMX19_05834 +0.6 1.7 Hydrogen peroxide-inducible genes activator compare
MPMX19_00725 +0.6 3.6 Transcriptional regulatory protein ros compare
MPMX19_04393 +0.6 1.5 hypothetical protein compare
MPMX19_05458 +0.6 2.4 hypothetical protein compare
MPMX19_05221 +0.6 1.7 hypothetical protein compare
MPMX19_01918 +0.6 0.9 tRNA-Ala compare
MPMX19_01342 +0.6 1.9 hypothetical protein compare
MPMX19_03527 +0.6 2.4 hypothetical protein compare
MPMX19_04551 +0.5 1.3 HTH-type transcriptional repressor RspR compare
MPMX19_06156 +0.5 1.9 hypothetical protein compare
MPMX19_05551 +0.5 1.6 Chemotaxis protein CheY compare
MPMX19_05379 +0.5 2.6 hypothetical protein compare
MPMX19_04449 +0.5 1.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_00210 +0.5 2.9 hypothetical protein compare
MPMX19_05442 +0.5 1.7 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_06807 +0.5 2.7 Solute-binding protein compare
MPMX19_00209 +0.5 3.2 Cbb3-type cytochrome c oxidase subunit FixP compare
MPMX19_06768 +0.5 1.8 hypothetical protein compare
MPMX19_02034 +0.5 1.6 Peptidoglycan-associated lipoprotein compare
MPMX19_01523 +0.5 2.5 Polar-differentiation response regulator DivK compare
MPMX19_03595 +0.5 3.4 C4-dicarboxylate transport protein 2 compare
MPMX19_04636 +0.5 1.4 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_06497 +0.5 2.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00064 +0.5 3.2 hypothetical protein compare
MPMX19_03757 +0.5 1.4 D-ribose pyranase compare
MPMX19_06785 +0.5 1.6 L-idonate 5-dehydrogenase (NAD(P)(+)) compare
MPMX19_02536 +0.5 1.8 hypothetical protein compare
MPMX19_03631 +0.5 1.1 hypothetical protein compare
MPMX19_06187 +0.5 2.4 hypothetical protein compare
MPMX19_03874 +0.5 1.7 hypothetical protein compare
MPMX19_04110 +0.5 2.3 Bifunctional protein PaaZ compare
MPMX19_05068 +0.5 1.7 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_00190 +0.5 2.0 hypothetical protein compare
MPMX19_02514 +0.5 1.1 hypothetical protein compare
MPMX19_06759 +0.5 1.5 Taurine import ATP-binding protein TauB compare
MPMX19_05990 +0.5 2.5 hypothetical protein compare
MPMX19_02816 +0.5 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04579 +0.5 1.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_05921 +0.5 1.4 hypothetical protein compare
MPMX19_02780 +0.5 2.4 hypothetical protein compare
MPMX19_04700 +0.5 1.8 Adaptive-response sensory-kinase SasA compare
MPMX19_06221 +0.5 2.4 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_05295 +0.5 0.9 hypothetical protein compare
MPMX19_02251 +0.5 1.3 hypothetical protein compare
MPMX19_00577 +0.5 2.3 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_05306 +0.5 2.7 RCS-specific HTH-type transcriptional activator RclR compare
MPMX19_05653 +0.5 2.4 Leucine-responsive regulatory protein compare
MPMX19_04095 +0.5 1.9 hypothetical protein compare
MPMX19_04985 +0.5 1.1 HTH-type transcriptional regulator DmlR compare
MPMX19_00664 +0.5 1.4 hypothetical protein compare
MPMX19_00878 +0.4 1.9 Guanidinium exporter compare
MPMX19_03667 +0.4 2.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00068 +0.4 2.2 hypothetical protein compare
MPMX19_04540 +0.4 2.4 hypothetical protein compare
MPMX19_04635 +0.4 2.0 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05853 +0.4 1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02809 +0.4 1.8 D-erythronate kinase compare
MPMX19_06646 +0.4 2.1 hypothetical protein compare
MPMX19_01702 +0.4 1.3 Inorganic triphosphatase compare
MPMX19_05234 +0.4 2.0 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06272 +0.4 0.8 hypothetical protein compare
MPMX19_06789 +0.4 1.0 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX19_02116 +0.4 1.3 Cold shock protein CspA compare
MPMX19_04120 +0.4 1.5 hypothetical protein compare
MPMX19_05181 +0.4 1.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_00423 +0.4 2.0 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_02787 +0.4 1.6 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_06610 +0.4 1.0 hypothetical protein compare
MPMX19_04680 +0.4 1.5 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_02415 +0.4 1.7 Transcriptional regulatory protein WalR compare
MPMX19_01358 +0.4 2.0 Electron transfer flavoprotein subunit alpha compare
MPMX19_06195 +0.4 1.2 hypothetical protein compare
MPMX19_00166 +0.4 1.1 hypothetical protein compare
MPMX19_05852 +0.4 2.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04681 +0.4 1.0 5-hydroxyisourate hydrolase compare
MPMX19_06917 +0.4 1.3 HTH-type transcriptional regulator PgrR compare
MPMX19_04565 +0.4 2.3 HTH-type transcriptional regulator PgrR compare
MPMX19_01617 +0.4 0.9 hypothetical protein compare
MPMX19_05313 +0.4 1.2 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_00957 +0.4 2.1 Phosphoribosyl-ATP pyrophosphatase compare
MPMX19_01940 +0.4 2.4 Ribosomal RNA large subunit methyltransferase H compare
MPMX19_01261 +0.4 3.1 Regulator of RpoS compare
MPMX19_03800 +0.4 1.2 hypothetical protein compare
MPMX19_05581 +0.4 0.9 hypothetical protein compare
MPMX19_06042 +0.4 2.3 hypothetical protein compare
MPMX19_06297 +0.4 0.8 hypothetical protein compare
MPMX19_00625 +0.4 1.8 hypothetical protein compare
MPMX19_02987 +0.4 1.1 hypothetical protein compare
MPMX19_05404 +0.4 1.8 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase compare
MPMX19_06341 +0.4 1.4 hypothetical protein compare
MPMX19_06635 +0.4 3.0 hypothetical protein compare
MPMX19_06374 +0.4 2.0 HTH-type transcriptional regulator HmrR compare
MPMX19_05621 +0.4 2.4 ABC transporter ATP-binding protein NatA compare
MPMX19_03934 +0.4 1.1 hypothetical protein compare
MPMX19_05337 +0.4 2.6 Inner membrane transport permease YhhJ compare
MPMX19_04099 +0.4 1.6 Chemotaxis protein CheY compare
MPMX19_04792 +0.4 1.6 hypothetical protein compare
MPMX19_06510 +0.4 1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05911 +0.4 1.2 hypothetical protein compare
MPMX19_03219 +0.4 1.9 putative ABC transporter ATP-binding protein YheS compare
MPMX19_04616 +0.4 1.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06691 +0.4 1.6 hypothetical protein compare
MPMX19_05043 +0.4 1.8 hypothetical protein compare
MPMX19_04531 +0.4 1.2 hypothetical protein compare
MPMX19_06456 +0.4 0.6 hypothetical protein compare
MPMX19_06830 +0.4 2.1 Maleate isomerase compare
MPMX19_02586 +0.4 2.7 Phosphate import ATP-binding protein PstB compare
MPMX19_06520 +0.4 1.2 Nitrate import ATP-binding protein NrtC compare
MPMX19_05656 +0.4 1.0 HTH-type transcriptional activator RhaR compare
MPMX19_01727 +0.4 1.5 hypothetical protein compare
MPMX19_01978 +0.4 0.9 hypothetical protein compare
MPMX19_04136 +0.4 2.4 sn-glycerol-3-phosphate import ATP-binding protein UgpC compare
MPMX19_03715 +0.4 1.6 Response regulator ArlR compare
MPMX19_00362 +0.4 1.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06897 +0.4 1.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04533 +0.4 1.3 HTH-type transcriptional regulator NimR compare
MPMX19_06843 +0.4 1.4 hypothetical protein compare
MPMX19_04677 +0.4 1.7 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_06471 +0.4 1.5 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03695 +0.4 2.0 hypothetical protein compare
MPMX19_00008 +0.4 1.3 hypothetical protein compare
MPMX19_02532 +0.4 0.8 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_06464 +0.4 1.3 Tryptophan synthase beta chain compare
MPMX19_02115 +0.4 1.6 hypothetical protein compare
MPMX19_04973 +0.4 1.6 hypothetical protein compare
MPMX19_05997 +0.4 1.2 hypothetical protein compare
MPMX19_06969 +0.4 0.7 hypothetical protein compare
MPMX19_02398 +0.4 2.7 hypothetical protein compare
MPMX19_05454 +0.4 1.1 hypothetical protein compare
MPMX19_03014 +0.4 1.8 Transcriptional activatory protein AadR compare
MPMX19_03026 +0.4 1.6 Fructose import ATP-binding protein FrcA compare
MPMX19_05201 +0.4 1.4 Hydroxycarboxylate dehydrogenase B compare
MPMX19_05686 +0.4 1.3 Chemotaxis protein CheY compare
MPMX19_03536 +0.3 1.5 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05015 +0.3 2.0 hypothetical protein compare
MPMX19_00669 +0.3 2.1 hypothetical protein compare
MPMX19_00268 +0.3 0.8 Transcriptional regulatory protein OmpR compare
MPMX19_03597 +0.3 1.8 C4-dicarboxylate transport transcriptional regulatory protein DctD compare
MPMX19_01355 +0.3 2.7 hypothetical protein compare
MPMX19_04914 +0.3 1.9 hypothetical protein compare
MPMX19_00112 +0.3 1.4 Multidrug transporter EmrE compare
MPMX19_05263 +0.3 2.2 hypothetical protein compare
MPMX19_05003 +0.3 1.7 NAD(P)H dehydrogenase (quinone) compare
MPMX19_03666 +0.3 1.4 hypothetical protein compare
MPMX19_06400 +0.3 2.4 Protease HtpX compare
MPMX19_06227 +0.3 1.7 L-arabinose 1-dehydrogenase (NAD(P)(+)) compare
MPMX19_06815 +0.3 1.1 hypothetical protein compare
MPMX19_03837 +0.3 1.5 HTH-type transcriptional regulator PgrR compare
MPMX19_04641 +0.3 2.6 hypothetical protein compare
MPMX19_01832 +0.3 1.1 hypothetical protein compare
MPMX19_06848 +0.3 2.1 hypothetical protein compare
MPMX19_05862 +0.3 1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_06281 +0.3 1.1 hypothetical protein compare
MPMX19_02686 +0.3 2.1 hypothetical protein compare
MPMX19_00923 +0.3 1.2 hypothetical protein compare
MPMX19_00708 +0.3 2.6 hypothetical protein compare
MPMX19_05342 +0.3 1.3 hypothetical protein compare
MPMX19_02181 +0.3 1.4 hypothetical protein compare
MPMX19_00875 +0.3 1.2 hypothetical protein compare
MPMX19_06901 +0.3 1.8 Alpha-ketoglutaric semialdehyde dehydrogenase compare
MPMX19_00266 +0.3 0.8 hypothetical protein compare
MPMX19_02865 +0.3 1.1 hypothetical protein compare
MPMX19_05585 +0.3 2.2 hypothetical protein compare
MPMX19_05472 +0.3 1.2 hypothetical protein compare
MPMX19_03287 +0.3 1.8 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_06700 +0.3 0.7 Copper-sensing transcriptional repressor RicR compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments