Experiment set1S77 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most important genes:

  gene name fitness t score description  
MPMX19_04010 -2.0 -3.4 Isoaspartyl peptidase compare
MPMX19_00304 -2.0 -3.7 Phosphatidylcholine synthase compare
MPMX19_06272 -1.9 -1.8 hypothetical protein compare
MPMX19_06490 -1.9 -2.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01884 -1.9 -3.8 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_02267 -1.8 -2.0 hypothetical protein compare
MPMX19_04208 -1.7 -4.5 flagellum biosynthesis repressor protein FlbT compare
MPMX19_04205 -1.6 -3.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05680 -1.5 -4.2 Cell cycle response regulator CtrA compare
MPMX19_06819 -1.5 -2.5 hypothetical protein compare
MPMX19_05044 -1.4 -2.3 hypothetical protein compare
MPMX19_00976 -1.4 -2.7 ATP-dependent RNA helicase RhlE compare
MPMX19_06546 -1.4 -2.9 hypothetical protein compare
MPMX19_04968 -1.4 -2.1 hypothetical protein compare
MPMX19_01497 -1.4 -4.2 hypothetical protein compare
MPMX19_04258 -1.4 -4.0 hypothetical protein compare
MPMX19_05023 -1.3 -1.4 hypothetical protein compare
MPMX19_02207 -1.3 -3.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_04115 -1.3 -2.0 Sensor histidine kinase RcsC compare
MPMX19_04210 -1.2 -1.9 hypothetical protein compare
MPMX19_06547 -1.2 -5.4 hypothetical protein compare
MPMX19_01304 -1.2 -7.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_06880 -1.2 -2.0 Validamycin A dioxygenase compare
MPMX19_01113 -1.2 -2.4 Adaptive-response sensory-kinase SasA compare
MPMX19_01483 -1.1 -7.8 Flagellar basal-body rod protein FlgG compare
MPMX19_01495 -1.1 -2.1 hypothetical protein compare
MPMX19_02735 -1.1 -2.6 Sensor histidine kinase RcsC compare
MPMX19_05065 -1.1 -2.2 Farnesyl diphosphate synthase compare
MPMX19_06353 -1.1 -1.9 hypothetical protein compare
MPMX19_02543 -1.1 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_00705 -1.1 -2.8 Cell division coordinator CpoB compare
MPMX19_04094 -1.1 -6.9 Flagellar M-ring protein compare
MPMX19_04615 -1.1 -2.1 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00794 -1.1 -3.3 Transcriptional activator protein CopR compare
MPMX19_03798 -1.0 -2.9 hypothetical protein compare
MPMX19_04087 -1.0 -2.9 Flagellum site-determining protein YlxH compare
MPMX19_03822 -1.0 -1.9 Sulfur carrier protein FdhD compare
MPMX19_01883 -1.0 -5.1 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_04092 -1.0 -5.7 Flagellar motor switch protein FliN compare
MPMX19_06090 -1.0 -2.0 Pyruvate dehydrogenase complex repressor compare
MPMX19_00152 -1.0 -1.8 hypothetical protein compare
MPMX19_03635 -1.0 -1.5 DNA-binding transcriptional activator DecR compare
MPMX19_04200 -1.0 -5.3 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_03141 -1.0 -2.3 hypothetical protein compare
MPMX19_00089 -1.0 -2.4 hypothetical protein compare
MPMX19_00061 -1.0 -2.7 L-lysine 2,3-aminomutase compare
MPMX19_01485 -1.0 -7.1 hypothetical protein compare
MPMX19_02980 -1.0 -1.8 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_01499 -1.0 -3.7 hypothetical protein compare
MPMX19_00128 -1.0 -7.0 hypothetical protein compare
MPMX19_00863 -1.0 -5.6 Flagellar basal-body rod protein FlgC compare
MPMX19_04218 -1.0 -4.4 Protein phosphatase PrpC compare
MPMX19_04000 -1.0 -2.6 Flagellar motor switch protein FliG compare
MPMX19_05714 -0.9 -5.7 hypothetical protein compare
MPMX19_01484 -0.9 -4.0 Flagellar basal-body rod protein FlgG compare
MPMX19_04223 -0.9 -7.8 hypothetical protein compare
MPMX19_04276 -0.9 -2.3 hypothetical protein compare
MPMX19_01365 -0.9 -2.0 hypothetical protein compare
MPMX19_01283 -0.9 -2.4 hypothetical protein compare
MPMX19_00862 -0.9 -5.8 hypothetical protein compare
MPMX19_04199 -0.9 -5.5 Pseudaminic acid synthase compare
MPMX19_01777 -0.9 -2.4 2-aminoadipate transaminase compare
MPMX19_00608 -0.9 -1.1 hypothetical protein compare
MPMX19_04090 -0.9 -6.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_02714 -0.9 -2.4 hypothetical protein compare
MPMX19_02674 -0.9 -1.7 NADH:quinone reductase compare
MPMX19_00687 -0.9 -1.7 hypothetical protein compare
MPMX19_04222 -0.9 -7.5 hypothetical protein compare
MPMX19_04206 -0.9 -3.7 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_06123 -0.9 -1.9 hypothetical protein compare
MPMX19_00854 -0.9 -7.9 hypothetical protein compare
MPMX19_04212 -0.9 -6.8 Photosystem I assembly protein Ycf3 compare
MPMX19_00167 -0.9 -1.5 hypothetical protein compare
MPMX19_01486 -0.9 -5.2 Flagellar L-ring protein compare
MPMX19_00866 -0.9 -5.0 Flagellar biosynthetic protein FliR compare
MPMX19_06777 -0.9 -2.0 hypothetical protein compare
MPMX19_00864 -0.9 -3.1 Flagellar hook-basal body complex protein FliE compare
MPMX19_05387 -0.9 -2.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_05727 -0.9 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_01585 -0.9 -2.2 Zinc uptake regulation protein compare
MPMX19_06700 -0.9 -1.7 Copper-sensing transcriptional repressor RicR compare
MPMX19_00234 -0.9 -2.6 hypothetical protein compare
MPMX19_04952 -0.9 -1.5 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00867 -0.9 -7.1 Flagellar biosynthetic protein FlhB compare
MPMX19_02235 -0.8 -2.9 tRNA-Ala compare
MPMX19_04089 -0.8 -6.6 Flagellar biosynthesis protein FlhA compare
MPMX19_01605 -0.8 -4.8 Chemotaxis protein CheY compare
MPMX19_02668 -0.8 -5.3 RNA polymerase sigma-54 factor 2 compare
MPMX19_03128 -0.8 -3.0 hypothetical protein compare
MPMX19_06746 -0.8 -1.0 Chemotaxis protein CheW compare
MPMX19_03752 -0.8 -1.6 hypothetical protein compare
MPMX19_06581 -0.8 -5.2 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_02551 -0.8 -2.4 hypothetical protein compare
MPMX19_03870 -0.8 -1.8 L-aspartate dehydrogenase compare
MPMX19_04198 -0.8 -6.3 hypothetical protein compare
MPMX19_01014 -0.8 -3.4 Indole-3-glycerol phosphate synthase compare
MPMX19_04354 -0.8 -1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06577 -0.8 -5.8 hypothetical protein compare
MPMX19_03085 -0.8 -2.0 Hydrogen peroxide-inducible genes activator compare
MPMX19_03618 -0.8 -3.9 hypothetical protein compare
MPMX19_06544 -0.8 -6.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_01243 -0.8 -1.5 hypothetical protein compare
MPMX19_02664 -0.8 -1.3 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_02772 -0.8 -2.1 N-acetylcysteine deacetylase compare
MPMX19_01481 -0.8 -5.9 Flagellar motor switch protein FliM compare
MPMX19_04204 -0.8 -4.5 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_05144 -0.8 -1.6 hypothetical protein compare
MPMX19_04325 -0.8 -3.6 hypothetical protein compare
MPMX19_00311 -0.8 -6.8 hypothetical protein compare
MPMX19_01748 -0.8 -1.9 hypothetical protein compare
MPMX19_01494 -0.8 -4.7 Flagellar P-ring protein compare
MPMX19_00478 -0.8 -1.5 putative protein RP812 compare
MPMX19_03281 -0.8 -2.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_01277 -0.8 -3.8 hypothetical protein compare
MPMX19_03096 -0.8 -1.6 hypothetical protein compare
MPMX19_06580 -0.8 -3.8 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04225 -0.8 -3.3 hypothetical protein compare
MPMX19_04093 -0.7 -2.5 hypothetical protein compare
MPMX19_01704 -0.7 -1.7 hypothetical protein compare
MPMX19_00236 -0.7 -2.3 HTH-type transcriptional regulator IscR compare
MPMX19_00530 -0.7 -1.8 Orotate phosphoribosyltransferase compare
MPMX19_01616 -0.7 -1.7 hypothetical protein compare
MPMX19_02234 -0.7 -3.3 hypothetical protein compare
MPMX19_02657 -0.7 -6.6 Glutamate synthase [NADPH] large chain compare
MPMX19_04207 -0.7 -2.4 hypothetical protein compare
MPMX19_00838 -0.7 -1.8 GTP pyrophosphokinase rsh compare
MPMX19_03654 -0.7 -1.8 Fructokinase compare
MPMX19_00996 -0.7 -3.3 Metalloprotease MmpA compare
MPMX19_04224 -0.7 -6.5 hypothetical protein compare
MPMX19_06967 -0.7 -1.3 hypothetical protein compare
MPMX19_03425 -0.7 -1.6 hypothetical protein compare
MPMX19_06545 -0.7 -6.0 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_02486 -0.7 -2.7 Chemotaxis protein CheY compare
MPMX19_02769 -0.7 -2.4 Ribokinase compare
MPMX19_06322 -0.7 -2.1 hypothetical protein compare
MPMX19_05872 -0.7 -1.8 Redox-sensitive transcriptional activator SoxR compare
MPMX19_05684 -0.7 -4.2 Chemotaxis protein methyltransferase 1 compare
MPMX19_05217 -0.7 -1.4 Flagellin compare
MPMX19_00262 -0.7 -1.4 Thiazole synthase compare
MPMX19_03586 -0.7 -1.9 HTH-type transcriptional repressor ComR compare
MPMX19_00319 -0.7 -1.1 hypothetical protein compare
MPMX19_02653 -0.7 -2.9 cytosol aminopeptidase compare
MPMX19_06519 -0.7 -1.2 HTH-type transcriptional repressor NagR compare
MPMX19_05590 -0.7 -2.2 HTH-type transcriptional regulator SyrM 1 compare
MPMX19_00050 -0.7 -2.1 Pyridoxal phosphate homeostasis protein compare
MPMX19_03771 -0.7 -2.4 hypothetical protein compare
MPMX19_01117 -0.7 -2.3 GTPase HflX compare
MPMX19_01729 -0.7 -1.3 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_04701 -0.7 -1.7 Transcriptional regulatory protein FixJ compare
MPMX19_01480 -0.7 -2.5 hypothetical protein compare
MPMX19_06985 -0.7 -1.4 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_05679 -0.7 -4.5 Flagellum-specific ATP synthase compare
MPMX19_01936 -0.7 -5.2 hypothetical protein compare
MPMX19_00846 -0.7 -1.5 hypothetical protein compare
MPMX19_00841 -0.7 -1.2 Holo-[acyl-carrier-protein] synthase compare
MPMX19_06422 -0.7 -2.1 hypothetical protein compare
MPMX19_01822 -0.7 -3.2 2-isopropylmalate synthase compare
MPMX19_04681 -0.7 -1.4 5-hydroxyisourate hydrolase compare
MPMX19_02460 -0.6 -5.8 Motility protein A compare
MPMX19_03976 -0.6 -2.8 hypothetical protein compare
MPMX19_00131 -0.6 -1.9 hypothetical protein compare
MPMX19_04353 -0.6 -3.4 hypothetical protein compare
MPMX19_00832 -0.6 -2.7 hypothetical protein compare
MPMX19_04913 -0.6 -1.2 hypothetical protein compare
MPMX19_01496 -0.6 -4.2 hypothetical protein compare
MPMX19_02085 -0.6 -2.2 hypothetical protein compare
MPMX19_02031 -0.6 -1.4 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_00868 -0.6 -5.7 Sensor kinase CckA compare
MPMX19_00695 -0.6 -1.8 putative transcriptional regulatory protein compare
MPMX19_00906 -0.6 -4.7 Amidophosphoribosyltransferase compare
MPMX19_00237 -0.6 -2.2 Cysteine synthase compare
MPMX19_06111 -0.6 -2.8 Non-motile and phage-resistance protein compare
MPMX19_06926 -0.6 -2.2 hypothetical protein compare
MPMX19_06340 -0.6 -2.4 hypothetical protein compare
MPMX19_00860 -0.6 -1.9 hypothetical protein compare
MPMX19_01085 -0.6 -2.4 hypothetical protein compare
MPMX19_04280 -0.6 -1.7 hypothetical protein compare
MPMX19_02320 -0.6 -1.2 HTH-type transcriptional regulator GltR compare
MPMX19_05678 -0.6 -3.5 hypothetical protein compare
MPMX19_05496 -0.6 -1.9 hypothetical protein compare
MPMX19_04903 -0.6 -2.0 hypothetical protein compare
MPMX19_00978 -0.6 -1.7 hypothetical protein compare
MPMX19_02402 -0.6 -0.9 hypothetical protein compare
MPMX19_01141 -0.6 -2.3 hypothetical protein compare
MPMX19_05874 -0.6 -2.1 2-keto-4-pentenoate hydratase compare
MPMX19_03795 -0.6 -2.7 hypothetical protein compare
MPMX19_02177 -0.6 -2.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_06337 -0.6 -1.7 Arsenic resistance transcriptional regulator ArsR1 compare
MPMX19_05652 -0.6 -1.6 hypothetical protein compare
MPMX19_05606 -0.6 -1.3 hypothetical protein compare
MPMX19_03948 -0.6 -1.0 tRNA-Ser compare
MPMX19_02658 -0.6 -4.5 Glutamate synthase [NADPH] small chain compare
MPMX19_01937 -0.6 -4.4 hypothetical protein compare
MPMX19_06448 -0.6 -2.6 hypothetical protein compare
MPMX19_02450 -0.6 -3.2 hypothetical protein compare
MPMX19_00904 -0.6 -3.4 DNA repair protein RadA compare
MPMX19_02105 -0.6 -1.7 hypothetical protein compare
MPMX19_00074 -0.6 -1.7 Electron transfer flavoprotein subunit beta compare
MPMX19_04289 -0.6 -3.2 hypothetical protein compare
MPMX19_05658 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments