Experiment set1S77 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06202 +1.1 1.8 hypothetical protein compare
MPMX19_04551 +1.1 2.9 HTH-type transcriptional repressor RspR compare
MPMX19_05207 +1.0 2.0 Hemolysin secretion protein D, plasmid compare
MPMX19_01864 +0.9 2.9 Regulatory protein AtoC compare
MPMX19_01978 +0.9 2.3 hypothetical protein compare
MPMX19_02120 +0.9 2.9 hypothetical protein compare
MPMX19_02218 +0.9 1.5 hypothetical protein compare
MPMX19_00207 +0.9 4.9 hypothetical protein compare
MPMX19_05068 +0.8 3.2 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_00209 +0.8 5.2 Cbb3-type cytochrome c oxidase subunit FixP compare
MPMX19_01545 +0.8 1.6 Lon protease compare
MPMX19_00206 +0.8 6.0 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_06297 +0.8 1.9 hypothetical protein compare
MPMX19_05798 +0.8 1.6 HTH-type transcriptional repressor NanR compare
MPMX19_00725 +0.7 4.5 Transcriptional regulatory protein ros compare
MPMX19_04700 +0.7 2.9 Adaptive-response sensory-kinase SasA compare
MPMX19_02424 +0.7 2.6 hypothetical protein compare
MPMX19_00210 +0.7 4.0 hypothetical protein compare
MPMX19_01050 +0.7 1.8 hypothetical protein compare
MPMX19_06765 +0.7 2.1 Hydrogen peroxide-inducible genes activator compare
MPMX19_00577 +0.7 3.6 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_01875 +0.6 2.5 hypothetical protein compare
MPMX19_05162 +0.6 2.9 Ferrous-iron efflux pump FieF compare
MPMX19_06106 +0.6 3.6 Bacteriohemerythrin compare
MPMX19_01454 +0.6 1.9 hypothetical protein compare
MPMX19_03676 +0.6 2.6 hypothetical protein compare
MPMX19_06193 +0.6 1.8 Flagellar hook-basal body complex protein FliE compare
MPMX19_06327 +0.6 1.6 hypothetical protein compare
MPMX19_01766 +0.6 3.8 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_00544 +0.6 1.7 hypothetical protein compare
MPMX19_03262 +0.6 2.1 putative HTH-type transcriptional repressor ExuR compare
MPMX19_06696 +0.6 1.8 hypothetical protein compare
MPMX19_04791 +0.6 2.0 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_06467 +0.6 3.2 hypothetical protein compare
MPMX19_04963 +0.6 1.6 Cysteine desulfurase IscS compare
MPMX19_05014 +0.6 1.7 Cytochrome c1 compare
MPMX19_06989 +0.6 1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05686 +0.6 2.3 Chemotaxis protein CheY compare
MPMX19_01059 +0.6 1.3 hypothetical protein compare
MPMX19_05195 +0.6 2.4 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05430 +0.6 2.0 HTH-type transcriptional regulator DmlR compare
MPMX19_01217 +0.6 2.3 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_05175 +0.6 2.7 hypothetical protein compare
MPMX19_00186 +0.6 1.2 hypothetical protein compare
MPMX19_04937 +0.6 2.1 Mannosyl-D-glycerate transport/metabolism system repressor MngR compare
MPMX19_01423 +0.6 1.6 hypothetical protein compare
MPMX19_01523 +0.5 2.5 Polar-differentiation response regulator DivK compare
MPMX19_05458 +0.5 2.6 hypothetical protein compare
MPMX19_06888 +0.5 2.0 hypothetical protein compare
MPMX19_00543 +0.5 1.6 Molybdenum cofactor guanylyltransferase compare
MPMX19_06917 +0.5 1.9 HTH-type transcriptional regulator PgrR compare
MPMX19_05205 +0.5 2.3 hypothetical protein compare
MPMX19_00208 +0.5 1.6 hypothetical protein compare
MPMX19_05896 +0.5 1.7 hypothetical protein compare
MPMX19_03631 +0.5 1.3 hypothetical protein compare
MPMX19_02531 +0.5 1.0 hypothetical protein compare
MPMX19_03862 +0.5 2.5 hypothetical protein compare
MPMX19_01261 +0.5 4.1 Regulator of RpoS compare
MPMX19_03786 +0.5 2.6 hypothetical protein compare
MPMX19_04051 +0.5 2.3 Alcohol dehydrogenase compare
MPMX19_00619 +0.5 2.0 Diacetyl reductase [(S)-acetoin forming] compare
MPMX19_05442 +0.5 1.7 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_03123 +0.5 1.3 Citrate lyase acyl carrier protein compare
MPMX19_02804 +0.5 2.0 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_03716 +0.5 2.4 hypothetical protein compare
MPMX19_01565 +0.5 1.7 hypothetical protein compare
MPMX19_05333 +0.5 1.0 Thymidine phosphorylase compare
MPMX19_04408 +0.5 1.5 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
MPMX19_03667 +0.5 2.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00708 +0.5 3.8 hypothetical protein compare
MPMX19_03257 +0.5 1.4 Glycine betaine/proline betaine transport system ATP-binding protein ProV compare
MPMX19_06776 +0.5 2.0 hypothetical protein compare
MPMX19_03800 +0.5 1.2 hypothetical protein compare
MPMX19_04043 +0.5 1.7 Aldehyde-alcohol dehydrogenase compare
MPMX19_03549 +0.5 1.8 HTH-type transcriptional regulator PgrR compare
MPMX19_00256 +0.5 2.1 hypothetical protein compare
MPMX19_05921 +0.5 1.3 hypothetical protein compare
MPMX19_04518 +0.5 2.4 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_03287 +0.5 2.7 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_06691 +0.5 1.9 hypothetical protein compare
MPMX19_02608 +0.5 2.1 hypothetical protein compare
MPMX19_06510 +0.5 1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05352 +0.5 1.4 putative cysteine-rich protein YhjQ compare
MPMX19_03493 +0.4 2.7 hypothetical protein compare
MPMX19_01351 +0.4 2.1 hypothetical protein compare
MPMX19_02279 +0.4 1.7 hypothetical protein compare
MPMX19_00370 +0.4 1.7 hypothetical protein compare
MPMX19_05005 +0.4 1.9 hypothetical protein compare
MPMX19_05231 +0.4 2.3 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_00694 +0.4 1.3 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_04633 +0.4 1.7 hypothetical protein compare
MPMX19_06456 +0.4 1.1 hypothetical protein compare
MPMX19_01394 +0.4 0.7 hypothetical protein compare
MPMX19_01395 +0.4 1.3 hypothetical protein compare
MPMX19_03916 +0.4 1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_04641 +0.4 3.4 hypothetical protein compare
MPMX19_00247 +0.4 2.5 Ferric uptake regulation protein compare
MPMX19_03724 +0.4 1.0 hypothetical protein compare
MPMX19_01945 +0.4 1.9 RNA pyrophosphohydrolase compare
MPMX19_03816 +0.4 1.0 hypothetical protein compare
MPMX19_05448 +0.4 1.6 DNA-invertase hin compare
MPMX19_06537 +0.4 2.5 NADH-dependent FMN reductase SfnF compare
MPMX19_01957 +0.4 3.3 Sensor histidine kinase RcsC compare
MPMX19_05581 +0.4 0.9 hypothetical protein compare
MPMX19_02850 +0.4 0.9 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_01958 +0.4 3.2 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
MPMX19_02703 +0.4 1.0 hypothetical protein compare
MPMX19_04648 +0.4 1.4 hypothetical protein compare
MPMX19_05358 +0.4 1.1 hypothetical protein compare
MPMX19_03353 +0.4 1.6 hypothetical protein compare
MPMX19_06460 +0.4 1.3 DNA-invertase hin compare
MPMX19_00764 +0.4 1.3 ECF RNA polymerase sigma factor EcfG compare
MPMX19_05152 +0.4 1.3 Phosphonoacetaldehyde hydrolase compare
MPMX19_05551 +0.4 1.5 Chemotaxis protein CheY compare
MPMX19_01703 +0.4 1.0 hypothetical protein compare
MPMX19_06763 +0.4 1.2 hypothetical protein compare
MPMX19_02585 +0.4 3.3 hypothetical protein compare
MPMX19_06632 +0.4 3.5 Toxin RTX-I translocation ATP-binding protein compare
MPMX19_00923 +0.4 1.2 hypothetical protein compare
MPMX19_02042 +0.4 2.2 3'-5' exonuclease DinG compare
MPMX19_05034 +0.4 1.4 ATP synthase subunit c compare
MPMX19_03114 +0.4 1.6 hypothetical protein compare
MPMX19_04323 +0.4 1.4 Segregation and condensation protein B compare
MPMX19_01421 +0.4 1.2 hypothetical protein compare
MPMX19_06759 +0.4 0.9 Taurine import ATP-binding protein TauB compare
MPMX19_03846 +0.4 1.2 hypothetical protein compare
MPMX19_00636 +0.4 2.1 hypothetical protein compare
MPMX19_06959 +0.4 2.5 hypothetical protein compare
MPMX19_06042 +0.4 2.2 hypothetical protein compare
MPMX19_05850 +0.4 1.1 hypothetical protein compare
MPMX19_00112 +0.4 1.8 Multidrug transporter EmrE compare
MPMX19_03306 +0.4 1.5 hypothetical protein compare
MPMX19_06518 +0.4 1.9 Methionine import system permease protein MetP compare
MPMX19_03462 +0.4 1.6 Acetate CoA-transferase subunit alpha compare
MPMX19_00675 +0.4 1.2 Peptidoglycan-associated lipoprotein compare
MPMX19_06635 +0.4 2.8 hypothetical protein compare
MPMX19_01373 +0.4 2.1 hypothetical protein compare
MPMX19_03823 +0.4 1.4 hypothetical protein compare
MPMX19_04677 +0.4 1.8 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_03520 +0.4 1.7 Hydrogen peroxide-inducible genes activator compare
MPMX19_06646 +0.4 1.7 hypothetical protein compare
MPMX19_06649 +0.4 3.2 hypothetical protein compare
MPMX19_05823 +0.4 1.9 hypothetical protein compare
MPMX19_05734 +0.4 1.8 Tol-Pal system protein TolQ compare
MPMX19_00064 +0.4 2.3 hypothetical protein compare
MPMX19_04620 +0.4 1.4 HTH-type transcriptional regulator CynR compare
MPMX19_03642 +0.4 1.0 hypothetical protein compare
MPMX19_06661 +0.4 1.7 hypothetical protein compare
MPMX19_03595 +0.4 2.3 C4-dicarboxylate transport protein 2 compare
MPMX19_06864 +0.4 1.5 hypothetical protein compare
MPMX19_04262 +0.4 2.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01618 +0.4 2.9 hypothetical protein compare
MPMX19_06279 +0.3 1.9 L-threonine kinase compare
MPMX19_06983 +0.3 1.7 putative FAD-linked oxidoreductase compare
MPMX19_00024 +0.3 1.8 3-dehydro-bile acid delta(4,6)-reductase compare
MPMX19_05342 +0.3 1.6 hypothetical protein compare
MPMX19_04099 +0.3 1.0 Chemotaxis protein CheY compare
MPMX19_05862 +0.3 1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_05043 +0.3 1.7 hypothetical protein compare
MPMX19_02937 +0.3 0.9 hypothetical protein compare
MPMX19_06033 +0.3 1.8 Phosphate transport system permease protein PstC compare
MPMX19_00956 +0.3 1.4 hypothetical protein compare
MPMX19_01249 +0.3 0.8 Periplasmic serine endoprotease DegP compare
MPMX19_03075 +0.3 2.0 hypothetical protein compare
MPMX19_03575 +0.3 1.3 HTH-type transcriptional regulator NimR compare
MPMX19_02801 +0.3 0.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00653 +0.3 2.0 hypothetical protein compare
MPMX19_05492 +0.3 2.3 hypothetical protein compare
MPMX19_03157 +0.3 0.6 hypothetical protein compare
MPMX19_05193 +0.3 0.8 Taurine-binding periplasmic protein compare
MPMX19_06901 +0.3 2.0 Alpha-ketoglutaric semialdehyde dehydrogenase compare
MPMX19_00790 +0.3 1.0 hypothetical protein compare
MPMX19_06223 +0.3 1.3 HTH-type transcriptional regulator GbpR compare
MPMX19_02063 +0.3 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05254 +0.3 0.8 Carbon monoxide dehydrogenase small chain compare
MPMX19_05452 +0.3 1.5 hypothetical protein compare
MPMX19_06281 +0.3 1.4 hypothetical protein compare
MPMX19_06497 +0.3 1.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_03571 +0.3 1.3 hypothetical protein compare
MPMX19_03450 +0.3 0.5 hypothetical protein compare
MPMX19_03579 +0.3 1.9 Sensor histidine kinase RcsC compare
MPMX19_03900 +0.3 1.4 Hca operon transcriptional activator HcaR compare
MPMX19_05199 +0.3 1.4 Zinc transport protein ZntB compare
MPMX19_03578 +0.3 1.5 HTH-type transcriptional regulator PgrR compare
MPMX19_00244 +0.3 1.4 hypothetical protein compare
MPMX19_04278 +0.3 2.2 Threonine efflux protein compare
MPMX19_05911 +0.3 1.5 hypothetical protein compare
MPMX19_06509 +0.3 1.2 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_00290 +0.3 1.7 hypothetical protein compare
MPMX19_04738 +0.3 1.0 hypothetical protein compare
MPMX19_03500 +0.3 1.1 Sulfur carrier protein FdhD compare
MPMX19_01083 +0.3 1.4 hypothetical protein compare
MPMX19_05483 +0.3 1.5 hypothetical protein compare
MPMX19_06061 +0.3 2.1 Solute-binding protein compare
MPMX19_03883 +0.3 1.6 hypothetical protein compare
MPMX19_06810 +0.3 1.9 hypothetical protein compare
MPMX19_06815 +0.3 0.9 hypothetical protein compare
MPMX19_03715 +0.3 1.2 Response regulator ArlR compare
MPMX19_03731 +0.3 1.4 hypothetical protein compare
MPMX19_06843 +0.3 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments