Experiment set1S76 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most important genes:

  gene name fitness t score description  
MPMX19_02267 -2.3 -1.6 hypothetical protein compare
MPMX19_01718 -2.2 -3.0 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_01597 -1.9 -3.1 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_03752 -1.8 -2.7 hypothetical protein compare
MPMX19_04171 -1.7 -1.9 16S ribosomal RNA compare
MPMX19_00260 -1.7 -2.7 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_04205 -1.6 -3.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00794 -1.5 -3.7 Transcriptional activator protein CopR compare
MPMX19_05680 -1.5 -3.9 Cell cycle response regulator CtrA compare
MPMX19_05825 -1.5 -3.0 hypothetical protein compare
MPMX19_03859 -1.4 -2.9 hypothetical protein compare
MPMX19_05044 -1.4 -2.1 hypothetical protein compare
MPMX19_00020 -1.4 -1.8 hypothetical protein compare
MPMX19_00530 -1.4 -3.3 Orotate phosphoribosyltransferase compare
MPMX19_02543 -1.4 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_01113 -1.3 -2.5 Adaptive-response sensory-kinase SasA compare
MPMX19_00128 -1.3 -8.9 hypothetical protein compare
MPMX19_01243 -1.3 -2.0 hypothetical protein compare
MPMX19_00680 -1.3 -2.3 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_00304 -1.3 -2.6 Phosphatidylcholine synthase compare
MPMX19_00862 -1.3 -7.3 hypothetical protein compare
MPMX19_00863 -1.3 -6.4 Flagellar basal-body rod protein FlgC compare
MPMX19_01834 -1.3 -2.1 hypothetical protein compare
MPMX19_04000 -1.3 -3.8 Flagellar motor switch protein FliG compare
MPMX19_01703 -1.3 -2.0 hypothetical protein compare
MPMX19_01053 -1.2 -3.0 Dihydroorotase compare
MPMX19_05220 -1.2 -2.7 hypothetical protein compare
MPMX19_03635 -1.2 -1.5 DNA-binding transcriptional activator DecR compare
MPMX19_01884 -1.2 -2.8 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_04092 -1.2 -4.9 Flagellar motor switch protein FliN compare
MPMX19_05217 -1.2 -1.9 Flagellin compare
MPMX19_04206 -1.2 -4.5 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_00061 -1.2 -2.9 L-lysine 2,3-aminomutase compare
MPMX19_04958 -1.2 -2.7 Methyl-accepting chemotaxis protein compare
MPMX19_04954 -1.1 -2.8 Putative hydro-lyase compare
MPMX19_06580 -1.1 -5.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04271 -1.1 -2.4 Response regulator rcp1 compare
MPMX19_01014 -1.1 -4.2 Indole-3-glycerol phosphate synthase compare
MPMX19_00838 -1.1 -2.3 GTP pyrophosphokinase rsh compare
MPMX19_03871 -1.1 -2.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00268 -1.1 -2.0 Transcriptional regulatory protein OmpR compare
MPMX19_02551 -1.1 -2.7 hypothetical protein compare
MPMX19_04362 -1.1 -1.6 Cytidine deaminase compare
MPMX19_03096 -1.1 -2.0 hypothetical protein compare
MPMX19_01304 -1.1 -6.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_04835 -1.1 -1.4 hypothetical protein compare
MPMX19_01883 -1.1 -5.0 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_05189 -1.1 -2.6 hypothetical protein compare
MPMX19_03165 -1.0 -1.7 hypothetical protein compare
MPMX19_04949 -1.0 -3.1 Leu/Ile/Val-binding protein compare
MPMX19_03504 -1.0 -1.9 Sulfur carrier protein FdhD compare
MPMX19_02674 -1.0 -1.9 NADH:quinone reductase compare
MPMX19_05818 -1.0 -1.9 hypothetical protein compare
MPMX19_02579 -1.0 -2.3 hypothetical protein compare
MPMX19_00182 -1.0 -2.1 hypothetical protein compare
MPMX19_03586 -1.0 -2.4 HTH-type transcriptional repressor ComR compare
MPMX19_02207 -1.0 -2.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_01630 -1.0 -3.0 Phosphoribosylamine--glycine ligase compare
MPMX19_05714 -1.0 -5.3 hypothetical protein compare
MPMX19_00858 -1.0 -3.6 Flagellar biosynthetic protein FliP compare
MPMX19_04204 -1.0 -5.2 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_04208 -1.0 -2.8 flagellum biosynthesis repressor protein FlbT compare
MPMX19_06490 -1.0 -1.7 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03976 -0.9 -3.6 hypothetical protein compare
MPMX19_04207 -0.9 -2.7 hypothetical protein compare
MPMX19_03722 -0.9 -1.8 hypothetical protein compare
MPMX19_01483 -0.9 -6.3 Flagellar basal-body rod protein FlgG compare
MPMX19_04323 -0.9 -2.2 Segregation and condensation protein B compare
MPMX19_00167 -0.9 -1.1 hypothetical protein compare
MPMX19_04200 -0.9 -4.8 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_02580 -0.9 -2.2 Acetyltransferase compare
MPMX19_02300 -0.9 -2.2 Transcription elongation factor GreA compare
MPMX19_00695 -0.9 -2.2 putative transcriptional regulatory protein compare
MPMX19_05678 -0.9 -4.7 hypothetical protein compare
MPMX19_05203 -0.9 -2.2 hypothetical protein compare
MPMX19_03768 -0.9 -1.8 hypothetical protein compare
MPMX19_05065 -0.9 -1.7 Farnesyl diphosphate synthase compare
MPMX19_01796 -0.9 -1.7 hypothetical protein compare
MPMX19_06969 -0.9 -1.9 hypothetical protein compare
MPMX19_00234 -0.9 -2.4 hypothetical protein compare
MPMX19_00675 -0.9 -2.1 Peptidoglycan-associated lipoprotein compare
MPMX19_00320 -0.9 -2.6 hypothetical protein compare
MPMX19_05511 -0.9 -2.7 hypothetical protein compare
MPMX19_00866 -0.9 -4.5 Flagellar biosynthetic protein FliR compare
MPMX19_05727 -0.9 -4.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_04893 -0.9 -2.0 hypothetical protein compare
MPMX19_03303 -0.9 -3.4 sn-glycerol-3-phosphate import ATP-binding protein UgpC compare
MPMX19_04391 -0.8 -4.6 Homoserine O-acetyltransferase compare
MPMX19_03435 -0.8 -2.4 hypothetical protein compare
MPMX19_00132 -0.8 -2.8 hypothetical protein compare
MPMX19_02303 -0.8 -1.8 hypothetical protein compare
MPMX19_01494 -0.8 -4.6 Flagellar P-ring protein compare
MPMX19_02737 -0.8 -3.9 Tryptophan synthase alpha chain compare
MPMX19_05684 -0.8 -4.6 Chemotaxis protein methyltransferase 1 compare
MPMX19_04094 -0.8 -5.0 Flagellar M-ring protein compare
MPMX19_05872 -0.8 -1.4 Redox-sensitive transcriptional activator SoxR compare
MPMX19_02973 -0.8 -2.2 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase compare
MPMX19_01714 -0.8 -1.2 tRNA-modifying protein YgfZ compare
MPMX19_01270 -0.8 -2.6 L-threonine ammonia-lyase compare
MPMX19_03425 -0.8 -1.4 hypothetical protein compare
MPMX19_04223 -0.8 -6.6 hypothetical protein compare
MPMX19_01485 -0.8 -5.6 hypothetical protein compare
MPMX19_03297 -0.8 -2.1 hypothetical protein compare
MPMX19_04551 -0.8 -1.3 HTH-type transcriptional repressor RspR compare
MPMX19_01054 -0.8 -3.2 Aspartate carbamoyltransferase compare
MPMX19_03276 -0.8 -2.1 hypothetical protein compare
MPMX19_01480 -0.8 -3.1 hypothetical protein compare
MPMX19_01484 -0.8 -3.5 Flagellar basal-body rod protein FlgG compare
MPMX19_01939 -0.8 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_04258 -0.8 -2.7 hypothetical protein compare
MPMX19_01486 -0.8 -4.4 Flagellar L-ring protein compare
MPMX19_00813 -0.8 -1.2 HTH-type transcriptional regulator CysL compare
MPMX19_01605 -0.8 -4.6 Chemotaxis protein CheY compare
MPMX19_04903 -0.8 -2.7 hypothetical protein compare
MPMX19_06235 -0.8 -2.1 Glycine cleavage system transcriptional activator compare
MPMX19_04199 -0.8 -4.5 Pseudaminic acid synthase compare
MPMX19_00854 -0.8 -6.5 hypothetical protein compare
MPMX19_03292 -0.8 -1.8 hypothetical protein compare
MPMX19_00748 -0.8 -2.1 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_05034 -0.8 -1.8 ATP synthase subunit c compare
MPMX19_02460 -0.7 -6.6 Motility protein A compare
MPMX19_00329 -0.7 -2.6 Putative membrane protein insertion efficiency factor compare
MPMX19_02235 -0.7 -2.0 tRNA-Ala compare
MPMX19_04325 -0.7 -3.2 hypothetical protein compare
MPMX19_00263 -0.7 -1.5 hypothetical protein compare
MPMX19_02657 -0.7 -6.5 Glutamate synthase [NADPH] large chain compare
MPMX19_06546 -0.7 -1.7 hypothetical protein compare
MPMX19_00311 -0.7 -6.4 hypothetical protein compare
MPMX19_03640 -0.7 -2.9 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
MPMX19_00906 -0.7 -5.4 Amidophosphoribosyltransferase compare
MPMX19_00867 -0.7 -5.9 Flagellar biosynthetic protein FlhB compare
MPMX19_00126 -0.7 -1.7 hypothetical protein compare
MPMX19_00572 -0.7 -2.3 Type-4 uracil-DNA glycosylase compare
MPMX19_01481 -0.7 -5.5 Flagellar motor switch protein FliM compare
MPMX19_01936 -0.7 -5.4 hypothetical protein compare
MPMX19_04010 -0.7 -1.7 Isoaspartyl peptidase compare
MPMX19_04089 -0.7 -5.7 Flagellar biosynthesis protein FlhA compare
MPMX19_04535 -0.7 -1.6 Maleate isomerase compare
MPMX19_04222 -0.7 -5.8 hypothetical protein compare
MPMX19_01047 -0.7 -2.1 Transcriptional regulatory protein ros compare
MPMX19_02484 -0.7 -1.9 Heat-inducible transcription repressor HrcA compare
MPMX19_03609 -0.7 -1.7 HTH-type transcriptional repressor NagR compare
MPMX19_03226 -0.7 -1.9 hypothetical protein compare
MPMX19_04615 -0.7 -1.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04921 -0.7 -1.9 HTH-type transcriptional regulator PuuR compare
MPMX19_04218 -0.7 -2.9 Protein phosphatase PrpC compare
MPMX19_01499 -0.7 -2.4 hypothetical protein compare
MPMX19_05095 -0.7 -1.9 Toxin YoeB compare
MPMX19_03396 -0.7 -1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02980 -0.7 -1.0 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_06090 -0.7 -1.4 Pyruvate dehydrogenase complex repressor compare
MPMX19_04198 -0.7 -5.1 hypothetical protein compare
MPMX19_04996 -0.7 -1.3 hypothetical protein compare
MPMX19_03822 -0.7 -1.1 Sulfur carrier protein FdhD compare
MPMX19_06545 -0.7 -5.7 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_00689 -0.7 -1.5 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_06179 -0.7 -0.9 putative SURF1-like protein compare
MPMX19_00152 -0.7 -1.3 hypothetical protein compare
MPMX19_04522 -0.7 -2.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06266 -0.7 -1.0 hypothetical protein compare
MPMX19_00841 -0.7 -1.2 Holo-[acyl-carrier-protein] synthase compare
MPMX19_05901 -0.7 -1.7 Motility protein B compare
MPMX19_04212 -0.7 -5.1 Photosystem I assembly protein Ycf3 compare
MPMX19_06327 -0.7 -0.8 hypothetical protein compare
MPMX19_02268 -0.6 -2.1 hypothetical protein compare
MPMX19_05930 -0.6 -1.7 Dipeptidyl-peptidase 6 compare
MPMX19_04276 -0.6 -1.2 hypothetical protein compare
MPMX19_02668 -0.6 -4.1 RNA polymerase sigma-54 factor 2 compare
MPMX19_05144 -0.6 -0.8 hypothetical protein compare
MPMX19_02495 -0.6 -3.4 Ribokinase compare
MPMX19_01702 -0.6 -1.5 Inorganic triphosphatase compare
MPMX19_00044 -0.6 -1.9 hypothetical protein compare
MPMX19_05438 -0.6 -1.7 hypothetical protein compare
MPMX19_04058 -0.6 -1.7 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_01645 -0.6 -1.2 HTH-type transcriptional regulator GltC compare
MPMX19_00868 -0.6 -5.7 Sensor kinase CckA compare
MPMX19_06123 -0.6 -1.1 hypothetical protein compare
MPMX19_06264 -0.6 -2.2 hypothetical protein compare
MPMX19_04090 -0.6 -4.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_04864 -0.6 -1.2 hypothetical protein compare
MPMX19_00864 -0.6 -2.2 Flagellar hook-basal body complex protein FliE compare
MPMX19_02084 -0.6 -0.9 hypothetical protein compare
MPMX19_01777 -0.6 -1.8 2-aminoadipate transaminase compare
MPMX19_04683 -0.6 -1.7 Acylamidase compare
MPMX19_02392 -0.6 -5.2 Aspartate/prephenate aminotransferase compare
MPMX19_06258 -0.6 -2.3 hypothetical protein compare
MPMX19_01392 -0.6 -4.7 hypothetical protein compare
MPMX19_05656 -0.6 -1.4 HTH-type transcriptional activator RhaR compare
MPMX19_02658 -0.6 -4.6 Glutamate synthase [NADPH] small chain compare
MPMX19_04968 -0.6 -1.0 hypothetical protein compare
MPMX19_01085 -0.6 -2.6 hypothetical protein compare
MPMX19_00976 -0.6 -1.3 ATP-dependent RNA helicase RhlE compare
MPMX19_02234 -0.6 -2.6 hypothetical protein compare
MPMX19_06102 -0.6 -1.7 Membrane-bound lytic murein transglycosylase C compare
MPMX19_03694 -0.6 -1.1 hypothetical protein compare
MPMX19_01149 -0.6 -2.9 Polyphosphate kinase compare
MPMX19_01101 -0.6 -1.5 hypothetical protein compare
MPMX19_01015 -0.6 -2.4 Anthranilate phosphoribosyltransferase compare
MPMX19_02742 -0.6 -1.5 hypothetical protein compare
MPMX19_00996 -0.6 -1.8 Metalloprotease MmpA compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments