Experiment set1S76 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06610 +1.4 3.9 hypothetical protein compare
MPMX19_06197 +1.2 2.7 hypothetical protein compare
MPMX19_05586 +1.2 2.7 hypothetical protein compare
MPMX19_06297 +1.2 1.4 hypothetical protein compare
MPMX19_03631 +0.9 2.3 hypothetical protein compare
MPMX19_02514 +0.9 2.2 hypothetical protein compare
MPMX19_06106 +0.9 4.4 Bacteriohemerythrin compare
MPMX19_06272 +0.8 1.6 hypothetical protein compare
MPMX19_03655 +0.8 1.9 hypothetical protein compare
MPMX19_03039 +0.8 2.0 Cyclic AMP receptor protein compare
MPMX19_04240 +0.8 2.8 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06808 +0.8 2.1 HTH-type transcriptional regulator DmlR compare
MPMX19_05470 +0.7 3.1 hypothetical protein compare
MPMX19_02532 +0.7 2.2 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_00208 +0.7 1.9 hypothetical protein compare
MPMX19_03195 +0.7 1.7 hypothetical protein compare
MPMX19_05068 +0.7 2.5 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_05762 +0.7 2.5 hypothetical protein compare
MPMX19_01875 +0.7 3.1 hypothetical protein compare
MPMX19_01050 +0.7 1.2 hypothetical protein compare
MPMX19_06923 +0.7 2.4 hypothetical protein compare
MPMX19_04727 +0.7 2.7 hypothetical protein compare
MPMX19_03552 +0.7 2.2 hypothetical protein compare
MPMX19_00206 +0.6 4.8 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_03472 +0.6 1.9 Fatty acid metabolism regulator protein compare
MPMX19_03597 +0.6 3.3 C4-dicarboxylate transport transcriptional regulatory protein DctD compare
MPMX19_01766 +0.6 3.5 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_05176 +0.6 1.6 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_00708 +0.6 4.6 hypothetical protein compare
MPMX19_04696 +0.6 2.0 Na(+)/H(+) antiporter subunit C1 compare
MPMX19_06886 +0.6 3.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05483 +0.6 2.4 hypothetical protein compare
MPMX19_02937 +0.6 1.5 hypothetical protein compare
MPMX19_04916 +0.6 2.5 DNA-binding transcriptional activator DecR compare
MPMX19_03014 +0.6 3.1 Transcriptional activatory protein AadR compare
MPMX19_03710 +0.6 2.3 Glycine cleavage system transcriptional activator compare
MPMX19_03699 +0.6 1.8 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_02815 +0.6 1.6 2-keto-4-pentenoate hydratase compare
MPMX19_04051 +0.6 2.8 Alcohol dehydrogenase compare
MPMX19_00725 +0.6 3.4 Transcriptional regulatory protein ros compare
MPMX19_05686 +0.6 1.7 Chemotaxis protein CheY compare
MPMX19_06193 +0.6 1.5 Flagellar hook-basal body complex protein FliE compare
MPMX19_01918 +0.6 1.2 tRNA-Ala compare
MPMX19_04043 +0.5 2.0 Aldehyde-alcohol dehydrogenase compare
MPMX19_04726 +0.5 1.4 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_01073 +0.5 2.1 5'-nucleotidase compare
MPMX19_05459 +0.5 1.4 hypothetical protein compare
MPMX19_04531 +0.5 2.0 hypothetical protein compare
MPMX19_04115 +0.5 1.3 Sensor histidine kinase RcsC compare
MPMX19_04682 +0.5 1.1 hypothetical protein compare
MPMX19_00344 +0.5 1.8 hypothetical protein compare
MPMX19_06042 +0.5 3.1 hypothetical protein compare
MPMX19_00209 +0.5 3.2 Cbb3-type cytochrome c oxidase subunit FixP compare
MPMX19_06635 +0.5 4.1 hypothetical protein compare
MPMX19_00334 +0.5 1.2 hypothetical protein compare
MPMX19_04990 +0.5 2.0 Hydrogen peroxide-inducible genes activator compare
MPMX19_03123 +0.5 1.2 Citrate lyase acyl carrier protein compare
MPMX19_02871 +0.5 2.1 HTH-type transcriptional activator RhaR compare
MPMX19_06567 +0.5 1.7 hypothetical protein compare
MPMX19_01811 +0.5 1.6 hypothetical protein compare
MPMX19_01653 +0.5 2.7 Serine acetyltransferase compare
MPMX19_06917 +0.5 1.7 HTH-type transcriptional regulator PgrR compare
MPMX19_06765 +0.5 1.4 Hydrogen peroxide-inducible genes activator compare
MPMX19_06498 +0.5 1.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02218 +0.5 1.3 hypothetical protein compare
MPMX19_06281 +0.5 1.8 hypothetical protein compare
MPMX19_06509 +0.5 1.5 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01618 +0.5 4.0 hypothetical protein compare
MPMX19_01426 +0.5 1.2 hypothetical protein compare
MPMX19_01128 +0.5 2.7 hypothetical protein compare
MPMX19_05553 +0.5 1.8 hypothetical protein compare
MPMX19_05850 +0.5 1.4 hypothetical protein compare
MPMX19_04110 +0.5 1.7 Bifunctional protein PaaZ compare
MPMX19_06520 +0.5 1.5 Nitrate import ATP-binding protein NrtC compare
MPMX19_01559 +0.5 2.0 hypothetical protein compare
MPMX19_05152 +0.5 1.5 Phosphonoacetaldehyde hydrolase compare
MPMX19_00544 +0.5 1.3 hypothetical protein compare
MPMX19_00577 +0.5 2.3 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_01261 +0.5 3.7 Regulator of RpoS compare
MPMX19_06134 +0.5 2.0 hypothetical protein compare
MPMX19_00414 +0.5 1.2 Pyruvate dehydrogenase complex repressor compare
MPMX19_01421 +0.5 1.4 hypothetical protein compare
MPMX19_03072 +0.5 0.7 hypothetical protein compare
MPMX19_02851 +0.5 1.8 hypothetical protein compare
MPMX19_04324 +0.5 2.2 Segregation and condensation protein A compare
MPMX19_00475 +0.5 1.3 hypothetical protein compare
MPMX19_06373 +0.5 1.2 Lipoprotein signal peptidase compare
MPMX19_06569 +0.5 1.1 hypothetical protein compare
MPMX19_02149 +0.5 1.5 hypothetical protein compare
MPMX19_01755 +0.5 1.9 hypothetical protein compare
MPMX19_06762 +0.4 1.0 Peptide deformylase compare
MPMX19_03298 +0.4 1.1 hypothetical protein compare
MPMX19_05551 +0.4 1.6 Chemotaxis protein CheY compare
MPMX19_04740 +0.4 1.7 hypothetical protein compare
MPMX19_03948 +0.4 0.7 tRNA-Ser compare
MPMX19_05038 +0.4 1.8 ATP synthase epsilon chain compare
MPMX19_06510 +0.4 1.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_04477 +0.4 1.7 hypothetical protein compare
MPMX19_02811 +0.4 1.3 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_04738 +0.4 1.2 hypothetical protein compare
MPMX19_06411 +0.4 2.7 Adaptive-response sensory-kinase SasA compare
MPMX19_00716 +0.4 2.7 Hydrogenase maturation factor HypD compare
MPMX19_03868 +0.4 1.8 Xylitol-binding protein compare
MPMX19_01629 +0.4 2.6 hypothetical protein compare
MPMX19_06866 +0.4 1.3 HTH-type transcriptional regulator NimR compare
MPMX19_06171 +0.4 2.2 hypothetical protein compare
MPMX19_03978 +0.4 1.7 hypothetical protein compare
MPMX19_05047 +0.4 2.2 Glycine cleavage system transcriptional activator compare
MPMX19_03595 +0.4 2.7 C4-dicarboxylate transport protein 2 compare
MPMX19_05826 +0.4 1.9 hypothetical protein compare
MPMX19_05342 +0.4 1.8 hypothetical protein compare
MPMX19_03924 +0.4 1.0 hypothetical protein compare
MPMX19_02279 +0.4 1.4 hypothetical protein compare
MPMX19_04443 +0.4 2.0 5-hydroxyisourate hydrolase compare
MPMX19_05896 +0.4 1.2 hypothetical protein compare
MPMX19_02875 +0.4 1.3 hypothetical protein compare
MPMX19_01244 +0.4 1.6 hypothetical protein compare
MPMX19_03900 +0.4 1.8 Hca operon transcriptional activator HcaR compare
MPMX19_01978 +0.4 1.0 hypothetical protein compare
MPMX19_01255 +0.4 1.8 Sulfur carrier protein TusA compare
MPMX19_03816 +0.4 1.1 hypothetical protein compare
MPMX19_04302 +0.4 2.6 hypothetical protein compare
MPMX19_05915 +0.4 1.4 Flagellar M-ring protein compare
MPMX19_03001 +0.4 1.4 Ribulokinase compare
MPMX19_04641 +0.4 3.2 hypothetical protein compare
MPMX19_06342 +0.4 2.9 hypothetical protein compare
MPMX19_00010 +0.4 2.0 Transcriptional regulatory protein OmpR compare
MPMX19_02827 +0.4 2.0 Dipeptide transport system permease protein DppC compare
MPMX19_06649 +0.4 3.3 hypothetical protein compare
MPMX19_06631 +0.4 3.3 Hemolysin secretion protein D, plasmid compare
MPMX19_05734 +0.4 2.1 Tol-Pal system protein TolQ compare
MPMX19_06383 +0.4 1.6 hypothetical protein compare
MPMX19_00064 +0.4 2.4 hypothetical protein compare
MPMX19_00890 +0.4 1.0 hypothetical protein compare
MPMX19_04095 +0.4 1.6 hypothetical protein compare
MPMX19_04948 +0.4 0.9 HTH-type transcriptional regulator GltR compare
MPMX19_05082 +0.4 1.4 hypothetical protein compare
MPMX19_03786 +0.4 1.5 hypothetical protein compare
MPMX19_05747 +0.4 0.8 Transcriptional regulatory protein DegU compare
MPMX19_00655 +0.4 1.7 hypothetical protein compare
MPMX19_03731 +0.4 1.5 hypothetical protein compare
MPMX19_03494 +0.4 1.4 Regulatory protein AtoC compare
MPMX19_06896 +0.4 1.6 L-aspartate oxidase compare
MPMX19_02250 +0.4 2.4 hypothetical protein compare
MPMX19_04694 +0.4 1.2 Na(+)/H(+) antiporter subunit E1 compare
MPMX19_05442 +0.4 1.2 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_04863 +0.4 0.7 Transcriptional regulatory protein LnrK compare
MPMX19_01271 +0.4 1.7 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_04758 +0.4 2.7 Glutamine-binding periplasmic protein compare
MPMX19_01067 +0.4 0.6 hypothetical protein compare
MPMX19_01832 +0.4 1.6 hypothetical protein compare
MPMX19_01749 +0.4 1.9 hypothetical protein compare
MPMX19_05879 +0.4 1.8 L-cystine transport system permease protein YecS compare
MPMX19_02958 +0.4 2.4 Ribulokinase compare
MPMX19_03933 +0.4 1.9 hypothetical protein compare
MPMX19_01615 +0.4 2.1 Inner membrane protein YccF compare
MPMX19_03213 +0.4 1.1 hypothetical protein compare
MPMX19_04635 +0.4 1.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05002 +0.4 2.4 HTH-type transcriptional regulator DmlR compare
MPMX19_03897 +0.4 1.4 hypothetical protein compare
MPMX19_04767 +0.4 2.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06165 +0.4 2.4 Amino acid--[acyl-carrier-protein] ligase compare
MPMX19_01125 +0.4 0.6 hypothetical protein compare
MPMX19_01719 +0.4 1.0 Putative fluoride ion transporter CrcB compare
MPMX19_03664 +0.4 2.3 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
MPMX19_04529 +0.4 2.4 hypothetical protein compare
MPMX19_01624 +0.4 1.8 hypothetical protein compare
MPMX19_03126 +0.4 1.3 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
MPMX19_04674 +0.4 2.4 hypothetical protein compare
MPMX19_03629 +0.4 2.0 hypothetical protein compare
MPMX19_06985 +0.4 0.9 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_01727 +0.4 1.4 hypothetical protein compare
MPMX19_05853 +0.4 1.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04192 +0.4 1.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX19_00907 +0.4 1.9 putative oxidoreductase YciK compare
MPMX19_01866 +0.3 1.5 Sulfur carrier protein CysO compare
MPMX19_05907 +0.3 2.1 Flagellar L-ring protein compare
MPMX19_02063 +0.3 1.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04986 +0.3 1.3 hypothetical protein compare
MPMX19_05771 +0.3 2.3 1,2-phenylacetyl-CoA epoxidase, subunit B compare
MPMX19_05837 +0.3 2.2 hypothetical protein compare
MPMX19_03439 +0.3 0.9 hypothetical protein compare
MPMX19_00956 +0.3 1.4 hypothetical protein compare
MPMX19_05036 +0.3 1.8 hypothetical protein compare
MPMX19_04791 +0.3 0.8 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_03561 +0.3 1.4 Propane 2-monooxygenase, effector component compare
MPMX19_01217 +0.3 1.2 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_06821 +0.3 1.3 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_06646 +0.3 1.6 hypothetical protein compare
MPMX19_02241 +0.3 1.1 hypothetical protein compare
MPMX19_02583 +0.3 3.0 Protein SphX compare
MPMX19_04719 +0.3 2.2 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
MPMX19_03596 +0.3 2.7 C4-dicarboxylate transport sensor protein DctB compare
MPMX19_06807 +0.3 1.8 Solute-binding protein compare
MPMX19_04560 +0.3 0.8 hypothetical protein compare
MPMX19_02585 +0.3 2.6 hypothetical protein compare
MPMX19_06750 +0.3 1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_02913 +0.3 2.0 hypothetical protein compare
MPMX19_06217 +0.3 1.6 Fructose import ATP-binding protein FruK compare
MPMX19_04142 +0.3 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments