Experiment set1S75 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; low oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06272 +1.3 2.7 hypothetical protein compare
MPMX19_04863 +1.2 3.9 Transcriptional regulatory protein LnrK compare
MPMX19_03450 +1.1 2.2 hypothetical protein compare
MPMX19_00208 +0.9 2.9 hypothetical protein compare
MPMX19_01766 +0.9 5.4 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_05068 +0.9 3.2 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_06610 +0.8 1.8 hypothetical protein compare
MPMX19_04913 +0.8 1.9 hypothetical protein compare
MPMX19_06989 +0.8 2.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06967 +0.8 1.6 hypothetical protein compare
MPMX19_05254 +0.8 1.9 Carbon monoxide dehydrogenase small chain compare
MPMX19_03549 +0.8 2.0 HTH-type transcriptional regulator PgrR compare
MPMX19_00414 +0.7 1.7 Pyruvate dehydrogenase complex repressor compare
MPMX19_05850 +0.7 2.2 hypothetical protein compare
MPMX19_04551 +0.7 1.8 HTH-type transcriptional repressor RspR compare
MPMX19_06315 +0.7 1.2 ISL3 family transposase ISAli18 compare
MPMX19_03072 +0.7 0.9 hypothetical protein compare
MPMX19_03694 +0.7 1.8 hypothetical protein compare
MPMX19_06917 +0.7 2.7 HTH-type transcriptional regulator PgrR compare
MPMX19_00649 +0.7 3.6 Phosphoadenosine phosphosulfate reductase compare
MPMX19_01217 +0.7 2.6 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_06456 +0.7 1.4 hypothetical protein compare
MPMX19_03262 +0.7 2.3 putative HTH-type transcriptional repressor ExuR compare
MPMX19_01076 +0.7 1.3 Molybdopterin synthase catalytic subunit compare
MPMX19_04449 +0.7 1.3 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_06979 +0.7 1.7 hypothetical protein compare
MPMX19_00725 +0.7 4.0 Transcriptional regulatory protein ros compare
MPMX19_05656 +0.6 1.8 HTH-type transcriptional activator RhaR compare
MPMX19_01864 +0.6 1.6 Regulatory protein AtoC compare
MPMX19_03756 +0.6 1.9 hypothetical protein compare
MPMX19_01073 +0.6 2.5 5'-nucleotidase compare
MPMX19_04154 +0.6 2.9 hypothetical protein compare
MPMX19_02772 +0.6 2.2 N-acetylcysteine deacetylase compare
MPMX19_05586 +0.6 1.3 hypothetical protein compare
MPMX19_06635 +0.6 4.8 hypothetical protein compare
MPMX19_00129 +0.6 0.7 hypothetical protein compare
MPMX19_04633 +0.6 2.5 hypothetical protein compare
MPMX19_00064 +0.6 3.9 hypothetical protein compare
MPMX19_05798 +0.6 1.2 HTH-type transcriptional repressor NanR compare
MPMX19_00206 +0.6 4.4 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_03157 +0.6 1.5 hypothetical protein compare
MPMX19_00207 +0.6 3.1 hypothetical protein compare
MPMX19_01875 +0.6 2.6 hypothetical protein compare
MPMX19_05181 +0.6 1.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01421 +0.6 2.0 hypothetical protein compare
MPMX19_06770 +0.6 2.7 NAD-dependent glycerol dehydrogenase compare
MPMX19_06381 +0.6 1.4 putative manganese efflux pump MntP compare
MPMX19_03308 +0.6 2.2 hypothetical protein compare
MPMX19_04990 +0.6 1.9 Hydrogen peroxide-inducible genes activator compare
MPMX19_01609 +0.6 1.9 hypothetical protein compare
MPMX19_05989 +0.6 1.7 HTH-type transcriptional regulator HdfR compare
MPMX19_02149 +0.6 1.7 hypothetical protein compare
MPMX19_04680 +0.6 1.7 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_00475 +0.6 1.5 hypothetical protein compare
MPMX19_00166 +0.5 1.5 hypothetical protein compare
MPMX19_03637 +0.5 2.9 Nopaline-binding periplasmic protein compare
MPMX19_02974 +0.5 2.8 3-oxo-isoapionate kinase compare
MPMX19_05551 +0.5 2.0 Chemotaxis protein CheY compare
MPMX19_03710 +0.5 2.4 Glycine cleavage system transcriptional activator compare
MPMX19_01261 +0.5 4.2 Regulator of RpoS compare
MPMX19_01811 +0.5 1.3 hypothetical protein compare
MPMX19_05043 +0.5 2.4 hypothetical protein compare
MPMX19_05936 +0.5 2.4 Alpha-galactosidase compare
MPMX19_05082 +0.5 2.0 hypothetical protein compare
MPMX19_03900 +0.5 2.4 Hca operon transcriptional activator HcaR compare
MPMX19_01423 +0.5 1.7 hypothetical protein compare
MPMX19_06924 +0.5 2.1 hypothetical protein compare
MPMX19_05896 +0.5 1.6 hypothetical protein compare
MPMX19_04332 +0.5 2.6 hypothetical protein compare
MPMX19_02057 +0.5 1.4 hypothetical protein compare
MPMX19_06519 +0.5 1.2 HTH-type transcriptional repressor NagR compare
MPMX19_04095 +0.5 2.0 hypothetical protein compare
MPMX19_05599 +0.5 1.2 hypothetical protein compare
MPMX19_02398 +0.5 3.8 hypothetical protein compare
MPMX19_06759 +0.5 1.2 Taurine import ATP-binding protein TauB compare
MPMX19_06765 +0.5 1.1 Hydrogen peroxide-inducible genes activator compare
MPMX19_02747 +0.5 3.3 hypothetical protein compare
MPMX19_04549 +0.5 2.4 L-cystine-binding protein FliY compare
MPMX19_04494 +0.5 2.4 p-hydroxybenzoic acid efflux pump subunit AaeA compare
MPMX19_04700 +0.5 1.7 Adaptive-response sensory-kinase SasA compare
MPMX19_03667 +0.5 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06649 +0.5 4.1 hypothetical protein compare
MPMX19_02851 +0.5 1.4 hypothetical protein compare
MPMX19_03631 +0.5 0.9 hypothetical protein compare
MPMX19_03287 +0.5 2.8 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_03575 +0.5 1.7 HTH-type transcriptional regulator NimR compare
MPMX19_00209 +0.5 2.8 Cbb3-type cytochrome c oxidase subunit FixP compare
MPMX19_06569 +0.5 1.4 hypothetical protein compare
MPMX19_04458 +0.5 1.5 2-hydroxy-3-oxopropionate reductase compare
MPMX19_03527 +0.5 2.0 hypothetical protein compare
MPMX19_06460 +0.5 1.6 DNA-invertase hin compare
MPMX19_04682 +0.5 0.8 hypothetical protein compare
MPMX19_05470 +0.5 1.7 hypothetical protein compare
MPMX19_00664 +0.5 1.7 hypothetical protein compare
MPMX19_06513 +0.5 2.8 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_01523 +0.5 2.1 Polar-differentiation response regulator DivK compare
MPMX19_06520 +0.5 1.2 Nitrate import ATP-binding protein NrtC compare
MPMX19_06774 +0.5 2.5 hypothetical protein compare
MPMX19_05458 +0.4 1.8 hypothetical protein compare
MPMX19_02444 +0.4 2.1 hypothetical protein compare
MPMX19_06464 +0.4 1.7 Tryptophan synthase beta chain compare
MPMX19_02608 +0.4 2.1 hypothetical protein compare
MPMX19_05229 +0.4 1.9 ECF RNA polymerase sigma factor RpoE compare
MPMX19_05779 +0.4 1.2 Beta-ketoadipyl-CoA thiolase compare
MPMX19_06560 +0.4 1.8 hypothetical protein compare
MPMX19_03081 +0.4 1.2 Protein FecR compare
MPMX19_00694 +0.4 1.2 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_01618 +0.4 3.5 hypothetical protein compare
MPMX19_06482 +0.4 2.0 3-mercaptopropionate dioxygenase compare
MPMX19_06062 +0.4 2.7 hypothetical protein compare
MPMX19_03306 +0.4 1.6 hypothetical protein compare
MPMX19_00294 +0.4 1.8 Adaptive-response sensory-kinase SasA compare
MPMX19_06885 +0.4 1.4 Nitrate import ATP-binding protein NrtD compare
MPMX19_00611 +0.4 1.9 (3S)-malyl-CoA thioesterase compare
MPMX19_05459 +0.4 1.2 hypothetical protein compare
MPMX19_00134 +0.4 1.5 hypothetical protein compare
MPMX19_00716 +0.4 2.7 Hydrogenase maturation factor HypD compare
MPMX19_04995 +0.4 2.0 D-alanine aminotransferase compare
MPMX19_06897 +0.4 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02366 +0.4 2.5 hypothetical protein compare
MPMX19_03014 +0.4 2.0 Transcriptional activatory protein AadR compare
MPMX19_03350 +0.4 2.7 GTP 3',8-cyclase compare
MPMX19_04669 +0.4 1.2 Glucose 1-dehydrogenase compare
MPMX19_04743 +0.4 1.5 Formyltransferase/hydrolase complex subunit D compare
MPMX19_02611 +0.4 2.0 hypothetical protein compare
MPMX19_01832 +0.4 1.8 hypothetical protein compare
MPMX19_03472 +0.4 1.2 Fatty acid metabolism regulator protein compare
MPMX19_00613 +0.4 3.0 Sensor histidine kinase RcsC compare
MPMX19_04363 +0.4 3.0 Purine nucleoside phosphorylase 2 compare
MPMX19_06027 +0.4 1.5 hypothetical protein compare
MPMX19_04759 +0.4 1.5 HTH-type transcriptional regulator LutR compare
MPMX19_03655 +0.4 0.7 hypothetical protein compare
MPMX19_06106 +0.4 2.1 Bacteriohemerythrin compare
MPMX19_00708 +0.4 3.2 hypothetical protein compare
MPMX19_04739 +0.4 1.7 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
MPMX19_04844 +0.4 2.6 HTH-type transcriptional regulator HexR compare
MPMX19_03731 +0.4 1.4 hypothetical protein compare
MPMX19_03595 +0.4 2.5 C4-dicarboxylate transport protein 2 compare
MPMX19_04726 +0.4 1.2 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_00049 +0.4 1.8 hypothetical protein compare
MPMX19_05492 +0.4 2.5 hypothetical protein compare
MPMX19_05178 +0.4 1.8 Alkanesulfonate monooxygenase compare
MPMX19_01062 +0.4 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00186 +0.4 1.0 hypothetical protein compare
MPMX19_01755 +0.4 1.3 hypothetical protein compare
MPMX19_02585 +0.4 3.1 hypothetical protein compare
MPMX19_02679 +0.4 1.4 hypothetical protein compare
MPMX19_05185 +0.4 2.5 hypothetical protein compare
MPMX19_05096 +0.4 1.6 L-cystine import ATP-binding protein TcyC compare
MPMX19_04101 +0.4 2.5 hypothetical protein compare
MPMX19_04064 +0.4 2.4 hypothetical protein compare
MPMX19_02116 +0.4 1.0 Cold shock protein CspA compare
MPMX19_00956 +0.4 1.5 hypothetical protein compare
MPMX19_00651 +0.4 2.3 hypothetical protein compare
MPMX19_03462 +0.4 1.4 Acetate CoA-transferase subunit alpha compare
MPMX19_06723 +0.4 1.6 hypothetical protein compare
MPMX19_00719 +0.4 1.9 Protein ElaA compare
MPMX19_06500 +0.4 2.7 hypothetical protein compare
MPMX19_02801 +0.4 0.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06690 +0.4 1.9 hypothetical protein compare
MPMX19_02757 +0.4 1.6 Glutathione transport system permease protein GsiD compare
MPMX19_01935 +0.4 1.8 hypothetical protein compare
MPMX19_01653 +0.4 2.0 Serine acetyltransferase compare
MPMX19_04648 +0.4 1.6 hypothetical protein compare
MPMX19_03939 +0.4 1.3 Enoyl-CoA-hydratase compare
MPMX19_04786 +0.4 2.4 Thymidylate kinase compare
MPMX19_06773 +0.4 1.2 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_00577 +0.4 1.8 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_00852 +0.4 0.9 hypothetical protein compare
MPMX19_04271 +0.4 1.2 Response regulator rcp1 compare
MPMX19_06661 +0.4 1.7 hypothetical protein compare
MPMX19_05853 +0.4 1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06807 +0.4 2.0 Solute-binding protein compare
MPMX19_00210 +0.4 1.9 hypothetical protein compare
MPMX19_06848 +0.4 2.2 hypothetical protein compare
MPMX19_05762 +0.4 1.2 hypothetical protein compare
MPMX19_04733 +0.4 2.1 hypothetical protein compare
MPMX19_00957 +0.4 1.8 Phosphoribosyl-ATP pyrophosphatase compare
MPMX19_02937 +0.4 0.7 hypothetical protein compare
MPMX19_03206 +0.4 2.2 HTH-type transcriptional activator RhaS compare
MPMX19_02251 +0.4 1.0 hypothetical protein compare
MPMX19_05261 +0.4 1.6 Multidrug resistance protein MdtE compare
MPMX19_06241 +0.4 1.7 hypothetical protein compare
MPMX19_00966 +0.4 1.9 ATP-dependent zinc metalloprotease FtsH compare
MPMX19_01978 +0.4 0.9 hypothetical protein compare
MPMX19_01617 +0.4 0.7 hypothetical protein compare
MPMX19_04531 +0.4 1.0 hypothetical protein compare
MPMX19_03063 +0.4 1.1 hypothetical protein compare
MPMX19_06255 +0.4 1.7 hypothetical protein compare
MPMX19_01243 +0.4 0.8 hypothetical protein compare
MPMX19_06486 +0.4 1.7 Phenylacetate-coenzyme A ligase compare
MPMX19_00785 +0.3 3.0 hypothetical protein compare
MPMX19_02874 +0.3 1.4 HTH-type transcriptional regulator SutR compare
MPMX19_00244 +0.3 1.6 hypothetical protein compare
MPMX19_03699 +0.3 1.2 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_05813 +0.3 1.3 2-hydroxy-3-oxopropionate reductase compare
MPMX19_04120 +0.3 1.1 hypothetical protein compare
MPMX19_01955 +0.3 0.8 Putative anti-sigma factor antagonist compare
MPMX19_05627 +0.3 1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MPMX19_02583 +0.3 3.1 Protein SphX compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; low oxygen experiments