Experiment set1S746 for Pantoea agglomerans CFBP13505 P0401

Compare to:

m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
PagCFBP13505_RS21750 -7.0 -9.6 phosphoserine phosphatase compare
PagCFBP13505_RS15975 -6.6 -4.6 phosphoglycerate dehydrogenase compare
PagCFBP13505_RS12995 -6.1 -10.2 3-isopropylmalate dehydrogenase compare
PagCFBP13505_RS20935 -6.1 -13.5 branched-chain amino acid transaminase compare
PagCFBP13505_RS01180 -6.0 -7.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
PagCFBP13505_RS01185 -5.9 -13.7 imidazole glycerol phosphate synthase subunit HisF compare
PagCFBP13505_RS04465 -5.9 -9.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
PagCFBP13505_RS18430 -5.9 -13.7 acetylglutamate kinase compare
PagCFBP13505_RS09390 -5.9 -20.4 sulfite reductase subunit alpha compare
PagCFBP13505_RS20915 -5.9 -19.4 ketol-acid reductoisomerase compare
PagCFBP13505_RS18420 -5.6 -15.7 argininosuccinate lyase compare
PagCFBP13505_RS01200 -5.6 -7.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
PagCFBP13505_RS09385 -5.6 -30.4 hypothetical protein compare
PagCFBP13505_RS17110 -5.6 -16.8 diaminopimelate decarboxylase compare
PagCFBP13505_RS18425 -5.5 -16.4 argininosuccinate synthase compare
PagCFBP13505_RS13005 -5.5 -2.1 leu operon leader peptide compare
PagCFBP13505_RS14820 -5.5 -15.5 phosphoribosylformylglycinamidine synthase compare
PagCFBP13505_RS21900 -5.5 -10.5 threonine synthase compare
PagCFBP13505_RS07015 -5.4 -15.9 tryptophan synthase subunit beta compare
PagCFBP13505_RS07020 -5.4 -6.4 tryptophan synthase subunit alpha compare
PagCFBP13505_RS00230 -5.4 -20.5 amidophosphoribosyltransferase compare
PagCFBP13505_RS01205 -5.4 -11.9 histidinol-phosphate transaminase compare
PagCFBP13505_RS12985 -5.3 -5.8 3-isopropylmalate dehydratase small subunit compare
PagCFBP13505_RS10205 -5.3 -3.6 pyrroline-5-carboxylate reductase compare
PagCFBP13505_RS01210 -5.2 -11.6 histidinol dehydrogenase compare
PagCFBP13505_RS17980 -5.2 -20.0 5-deoxy-glucuronate isomerase compare
PagCFBP13505_RS18005 -5.2 -18.7 myo-inosose-2 dehydratase compare
PagCFBP13505_RS18435 -5.2 -13.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
PagCFBP13505_RS01190 -5.1 -5.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PagCFBP13505_RS22330 -5.1 -16.0 homoserine O-succinyltransferase compare
PagCFBP13505_RS03535 -5.1 -5.0 citrate synthase compare
PagCFBP13505_RS01455 -5.0 -15.6 sugar ABC transporter ATP-binding protein compare
PagCFBP13505_RS15165 -5.0 -8.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
PagCFBP13505_RS21895 -4.9 -14.0 homoserine kinase compare
PagCFBP13505_RS17990 -4.9 -19.8 5-dehydro-2-deoxygluconokinase compare
PagCFBP13505_RS15070 -4.9 -15.4 phosphoribosylformylglycinamidine cyclo-ligase compare
PagCFBP13505_RS20930 -4.9 -16.0 dihydroxy-acid dehydratase compare
PagCFBP13505_RS18445 -4.9 -21.1 phosphoenolpyruvate carboxylase compare
PagCFBP13505_RS10040 -4.9 -7.4 glutamate 5-kinase compare
PagCFBP13505_RS01195 -4.8 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
PagCFBP13505_RS12990 -4.8 -14.4 3-isopropylmalate dehydratase large subunit compare
PagCFBP13505_RS16990 -4.8 -19.0 amino-acid N-acetyltransferase compare
PagCFBP13505_RS12880 -4.8 -6.6 carbamoyl-phosphate synthase large subunit compare
PagCFBP13505_RS18000 -4.8 -15.3 Gfo/Idh/MocA family oxidoreductase compare
PagCFBP13505_RS03405 -4.8 -19.1 asparagine synthase B compare
PagCFBP13505_RS07005 -4.8 -11.4 anthranilate phosphoribosyltransferase compare
PagCFBP13505_RS18460 -4.7 -19.0 cystathionine gamma-synthase compare
PagCFBP13505_RS11345 -4.7 -10.8 class 1 fructose-bisphosphatase compare
PagCFBP13505_RS20925 -4.7 -15.4 threonine ammonia-lyase, biosynthetic compare
PagCFBP13505_RS07010 -4.6 -7.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
PagCFBP13505_RS11290 -4.6 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PagCFBP13505_RS22575 -4.6 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
PagCFBP13505_RS04625 -4.5 -5.3 quinone-dependent dihydroorotate dehydrogenase compare
PagCFBP13505_RS17995 -4.5 -14.2 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) compare
PagCFBP13505_RS08965 -4.4 -8.2 2-iminobutanoate/2-iminopropanoate deaminase compare
PagCFBP13505_RS01460 -4.4 -16.8 ABC transporter permease compare
PagCFBP13505_RS13000 -4.4 -17.9 2-isopropylmalate synthase compare
PagCFBP13505_RS00345 -4.4 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PagCFBP13505_RS08955 -4.3 -6.6 aspartate carbamoyltransferase compare
PagCFBP13505_RS03620 -4.3 -6.5 Tol-Pal system protein TolB compare
PagCFBP13505_RS06995 -4.3 -13.8 anthranilate synthase component 1 compare
PagCFBP13505_RS16805 -4.3 -12.0 phosphoadenylyl-sulfate reductase compare
PagCFBP13505_RS03555 -4.3 -3.0 succinate dehydrogenase iron-sulfur subunit compare
PagCFBP13505_RS05115 -4.3 -7.1 dihydroorotase compare
PagCFBP13505_RS21890 -4.3 -17.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
PagCFBP13505_RS00335 -4.2 -2.9 NADH-quinone oxidoreductase subunit A compare
PagCFBP13505_RS11210 -4.2 -4.0 adenylosuccinate synthase compare
PagCFBP13505_RS06900 -4.1 -4.0 orotidine-5'-phosphate decarboxylase compare
PagCFBP13505_RS22580 -4.1 -8.5 phosphoribosylamine--glycine ligase compare
PagCFBP13505_RS08950 -4.1 -8.6 ornithine carbamoyltransferase compare
PagCFBP13505_RS09350 -4.1 -3.9 RNA polymerase factor sigma-54 compare
PagCFBP13505_RS04685 -4.1 -7.6 porin OmpA compare
PagCFBP13505_RS03540 -4.0 -4.0 succinate dehydrogenase cytochrome b556 subunit compare
PagCFBP13505_RS00395 -3.9 -3.8 NADH-quinone oxidoreductase subunit NuoN compare
PagCFBP13505_RS12875 -3.9 -5.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
PagCFBP13505_RS16775 -3.9 -8.5 adenylyl-sulfate kinase compare
PagCFBP13505_RS00385 -3.8 -5.8 NADH-quinone oxidoreductase subunit L compare
PagCFBP13505_RS00360 -3.8 -3.7 NADH-quinone oxidoreductase subunit NuoG compare
PagCFBP13505_RS03560 -3.8 -4.5 2-oxoglutarate dehydrogenase E1 component compare
PagCFBP13505_RS00340 -3.8 -2.6 NADH-quinone oxidoreductase subunit B compare
PagCFBP13505_RS17975 -3.8 -13.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
PagCFBP13505_RS01450 -3.7 -9.7 sugar ABC transporter substrate-binding protein compare
PagCFBP13505_RS01215 -3.7 -6.8 ATP phosphoribosyltransferase compare
PagCFBP13505_RS02060 -3.7 -7.5 flagella biosynthesis regulatory protein FliZ compare
PagCFBP13505_RS16815 -3.7 -18.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
PagCFBP13505_RS16810 -3.7 -15.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
PagCFBP13505_RS15970 -3.7 -6.6 5-formyltetrahydrofolate cyclo-ligase compare
PagCFBP13505_RS00370 -3.7 -5.0 NADH-quinone oxidoreductase subunit NuoI compare
PagCFBP13505_RS00390 -3.7 -3.5 NADH-quinone oxidoreductase subunit M compare
PagCFBP13505_RS13365 -3.6 -4.8 RNA polymerase-binding protein DksA compare
PagCFBP13505_RS12265 -3.6 -5.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
PagCFBP13505_RS19970 -3.6 -11.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
PagCFBP13505_RS02880 -3.6 -4.7 NAD-dependent epimerase compare
PagCFBP13505_RS04415 -3.5 -10.7 leucine-responsive transcriptional regulator Lrp compare
PagCFBP13505_RS19035 -3.4 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
PagCFBP13505_RS18440 -3.4 -16.3 acetylornithine deacetylase compare
PagCFBP13505_RS03550 -3.3 -8.2 succinate dehydrogenase flavoprotein subunit compare
PagCFBP13505_RS07000 -3.2 -6.0 glutamine amidotransferase compare
PagCFBP13505_RS12270 -3.2 -8.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
PagCFBP13505_RS18745 -3.1 -6.3 orotate phosphoribosyltransferase compare
PagCFBP13505_RS17665 -3.0 -4.3 EAL domain-containing protein compare
PagCFBP13505_RS00355 -3.0 -6.4 NADH-quinone oxidoreductase subunit NuoF compare
PagCFBP13505_RS03625 -2.9 -4.6 peptidoglycan-associated lipoprotein Pal compare
PagCFBP13505_RS22280 -2.8 -14.2 glucose-6-phosphate isomerase compare
PagCFBP13505_RS17870 -2.7 -4.4 inorganic phosphate transporter PitA compare
PagCFBP13505_RS03545 -2.7 -5.2 succinate dehydrogenase membrane anchor subunit compare
PagCFBP13505_RS15295 -2.6 -11.9 HTH-type transcriptional regulator MetR compare
PagCFBP13505_RS15525 -2.6 -5.0 thioredoxin TrxA compare
PagCFBP13505_RS12805 -2.5 -5.1 DUF1493 family protein compare
PagCFBP13505_RS00090 -2.4 -3.4 phosphohistidine phosphatase SixA compare
PagCFBP13505_RS02535 -2.3 -8.1 carboxy terminal-processing peptidase compare
PagCFBP13505_RS20835 -2.3 -7.3 manganese efflux pump MntP compare
PagCFBP13505_RS02850 -2.3 -5.7 formyltetrahydrofolate deformylase compare
PagCFBP13505_RS18890 -2.3 -11.9 nitrogen regulation protein NR(II) compare
PagCFBP13505_RS09130 -2.3 -6.8 ribosome maturation factor RimP compare
PagCFBP13505_RS15880 -2.3 -2.5 site-specific tyrosine recombinase XerD compare
PagCFBP13505_RS12585 -2.2 -2.3 type II toxin-antitoxin system HicB family antitoxin compare
PagCFBP13505_RS13020 -2.1 -11.5 catabolite repressor/activator compare
PagCFBP13505_RS12900 -2.1 -4.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
PagCFBP13505_RS06580 -2.1 -4.9 universal stress protein UspE compare
PagCFBP13505_RS22185 -2.1 -2.8 hypothetical protein compare
PagCFBP13505_RS16735 -2.0 -8.7 murein hydrolase activator NlpD compare
PagCFBP13505_RS08330 -1.9 -2.5 helix-turn-helix domain-containing protein compare
PagCFBP13505_RS14600 -1.9 -11.0 magnesium-translocating P-type ATPase compare
PagCFBP13505_RS16555 -1.8 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
PagCFBP13505_RS05225 -1.8 -3.5 ribonuclease E compare
PagCFBP13505_RS15400 -1.8 -4.6 class I adenylate cyclase compare
PagCFBP13505_RS04125 -1.8 -5.5 DNA starvation/stationary phase protection protein Dps compare
PagCFBP13505_RS12905 -1.8 -5.7 Co2+/Mg2+ efflux protein ApaG compare
PagCFBP13505_RS15895 -1.7 -4.5 FAD assembly factor SdhE compare
PagCFBP13505_RS15495 -1.7 -6.5 dTDP-glucose 4,6-dehydratase compare
PagCFBP13505_RS19985 -1.7 -7.9 cysteine synthase A compare
PagCFBP13505_RS15215 -1.6 -2.8 NAD(P)H-flavin reductase compare
PagCFBP13505_RS17350 -1.6 -2.1 tetratricopeptide repeat-containing protein compare
PagCFBP13505_RS16780 -1.6 -10.3 sulfate adenylyltransferase subunit CysN compare
PagCFBP13505_RS05610 -1.6 -4.0 pyridoxamine 5'-phosphate oxidase compare
PagCFBP13505_RS00295 -1.5 -6.9 phosphate acetyltransferase compare
PagCFBP13505_RS20215 -1.5 -2.2 hypothetical protein compare
PagCFBP13505_RS19450 -1.5 -6.8 two-component system sensor histidine kinase PhoQ compare
PagCFBP13505_RS18565 -1.5 -10.4 CDF family cation-efflux transporter FieF compare
PagCFBP13505_RS04385 -1.4 -9.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PagCFBP13505_RS13185 -1.4 -5.1 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
PagCFBP13505_RS00200 -1.4 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
PagCFBP13505_RS04170 -1.4 -3.9 DNA-binding protein compare
PagCFBP13505_RS14785 -1.4 -1.6 pyridoxine 5'-phosphate synthase compare
PagCFBP13505_RS05660 -1.4 -3.6 electron transport complex subunit E compare
PagCFBP13505_RS08655 -1.3 -3.9 PTS sugar transporter subunit IIA compare
PagCFBP13505_RS09740 -1.3 -3.0 helix-turn-helix domain-containing protein compare
PagCFBP13505_RS11180 -1.3 -5.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PagCFBP13505_RS14345 -1.3 -4.6 methionine synthase compare
PagCFBP13505_RS00190 -1.3 -5.0 4-phosphoerythronate dehydrogenase PdxB compare
PagCFBP13505_RS15385 -1.3 -3.4 DUF484 domain-containing protein compare
PagCFBP13505_RS16785 -1.3 -7.4 sulfate adenylyltransferase subunit CysD compare
PagCFBP13505_RS18690 -1.3 -2.6 glycosyltransferase family 4 protein compare
PagCFBP13505_RS15475 -1.3 -6.4 lipid III flippase WzxE compare
PagCFBP13505_RS00300 -1.2 -8.5 acetate kinase compare
PagCFBP13505_RS21885 -1.2 -1.9 thr operon leader peptide compare
PagCFBP13505_RS16740 -1.2 -5.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PagCFBP13505_RS14725 -1.2 -6.5 ATP-dependent RNA helicase SrmB compare
PagCFBP13505_RS10510 -1.2 -7.5 cytochrome o ubiquinol oxidase subunit I compare
PagCFBP13505_RS18895 -1.2 -7.3 nitrogen regulation protein NR(I) compare
PagCFBP13505_RS05595 -1.2 -1.5 YgdI/YgdR family lipoprotein compare
PagCFBP13505_RS09095 -1.2 -7.7 lipoprotein NlpI compare
PagCFBP13505_RS16790 -1.2 -4.4 uroporphyrinogen-III C-methyltransferase compare
PagCFBP13505_RS06300 -1.2 -1.9 DUF2384 domain-containing protein compare
PagCFBP13505_RS14350 -1.1 -5.6 DUF1852 domain-containing protein compare
PagCFBP13505_RS20960 -1.1 -7.3 DUF413 domain-containing protein compare
PagCFBP13505_RS00460 -1.1 -5.1 transcriptional regulator RcsB compare
PagCFBP13505_RS19455 -1.1 -1.5 two-component system response regulator PhoP compare
PagCFBP13505_RS04410 -1.1 -3.5 thioredoxin-disulfide reductase compare
PagCFBP13505_RS21875 -1.1 -4.0 two-component system response regulator ArcA compare
PagCFBP13505_RS09365 -1.1 -7.8 RNase adapter RapZ compare
PagCFBP13505_RS00750 -1.1 -4.6 1-phosphofructokinase compare
PagCFBP13505_RS18880 -1.1 -4.0 ribosome-dependent GTPase TypA compare
PagCFBP13505_RS08910 -1.1 -5.3 leucyl aminopeptidase compare
PagCFBP13505_RS20945 -1.1 -7.4 acetolactate synthase 2 catalytic subunit compare
PagCFBP13505_RS21980 -1.1 -2.3 single-stranded DNA-binding protein compare
PagCFBP13505_RS16670 -1.1 -4.0 recombinase RecA compare
PagCFBP13505_RS17750 -1.1 -1.5 pyruvate kinase PykF compare
PagCFBP13505_RS15145 -1.1 -2.0 thioredoxin-dependent thiol peroxidase compare
PagCFBP13505_RS01350 -1.0 -3.4 helix-turn-helix transcriptional regulator compare
PagCFBP13505_RS20965 -1.0 -7.2 HTH-type transcriptional regulator HdfR compare
PagCFBP13505_RS15930 -1.0 -3.2 glycine cleavage system protein GcvH compare
PagCFBP13505_RS02690 -1.0 -4.2 septum site-determining protein MinC compare
PagCFBP13505_RS13015 -1.0 -1.9 acetolactate synthase small subunit compare
PagCFBP13505_RS06350 -1.0 -5.9 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
PagCFBP13505_RS19560 -1.0 -2.1 muramoyltetrapeptide carboxypeptidase compare
PagCFBP13505_RS15045 -1.0 -6.0 polyphosphate kinase 1 compare
PagCFBP13505_RS01345 -1.0 -2.3 type II toxin-antitoxin system HipA family toxin compare
PagCFBP13505_RS10500 -1.0 -4.7 cytochrome o ubiquinol oxidase subunit IV compare
PagCFBP13505_RS18830 -0.9 -1.9 DNA-directed RNA polymerase subunit omega compare
PagCFBP13505_RS13010 -0.9 -7.2 acetolactate synthase 3 large subunit compare
PagCFBP13505_RS03255 -0.9 -2.3 lipoyl(octanoyl) transferase LipB compare
PagCFBP13505_RS15470 -0.9 -6.9 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
PagCFBP13505_RS10495 -0.9 -3.8 protoheme IX farnesyltransferase compare
PagCFBP13505_RS08605 -0.9 -1.6 DUF1640 domain-containing protein compare
PagCFBP13505_RS10390 -0.9 -5.1 tRNA guanosine(34) transglycosylase Tgt compare
PagCFBP13505_RS09100 -0.9 -6.0 polyribonucleotide nucleotidyltransferase compare
PagCFBP13505_RS22310 -0.9 -6.3 glyoxylate bypass operon transcriptional repressor IclR compare
PagCFBP13505_RS20010 -0.9 -1.6 bile acid:sodium symporter compare


Specific Phenotypes

None in this experiment

For Pantoea agglomerans CFBP13505 P0401 in carbon source experiments

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